Wall clock time and date at job start Sat Apr 11 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46765 * 124.34406 * 2 1 4 4 C 1.54481 * 105.47148 * 162.98461 * 3 2 1 5 5 C 1.54627 * 101.76449 * 25.41076 * 4 3 2 6 6 H 1.09003 * 110.48853 * 216.39107 * 5 4 3 7 7 N 1.46900 * 110.48696 * 93.88498 * 5 4 3 8 8 C 1.48566 * 110.99679 * 289.28655 * 7 5 4 9 9 C 1.54390 * 104.59328 * 200.95971 * 8 7 5 10 10 C 1.54257 * 105.06073 * 23.85144 * 9 8 7 11 11 C 1.48564 * 111.00295 * 173.86880 * 7 5 4 12 12 H 1.08997 * 110.40873 * 40.25669 * 11 7 5 13 13 C 1.53001 * 110.40916 * 277.81695 * 11 7 5 14 14 N 1.46495 * 109.47027 * 174.86507 * 13 11 7 15 15 C 1.34773 * 120.00412 * 184.77151 * 14 13 11 16 16 O 1.21290 * 119.99748 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00486 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47070 * 179.97438 * 17 15 14 19 19 C 1.76206 * 99.99893 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99804 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99939 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99961 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47355 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47204 * 120.00284 * 23 21 19 26 26 H 1.48505 * 109.46903 * 239.99956 * 23 21 19 27 27 C 1.34413 * 124.35309 * 179.97438 * 2 1 3 28 28 O 1.21289 * 124.94121 * 0.44153 * 27 2 1 29 29 H 1.09005 * 109.46746 * 90.00611 * 1 2 3 30 30 H 1.09000 * 109.46714 * 209.99777 * 1 2 3 31 31 H 1.08997 * 109.46960 * 330.00394 * 1 2 3 32 32 H 1.08994 * 110.24872 * 43.97859 * 3 2 1 33 33 H 1.09006 * 110.24267 * 281.97690 * 3 2 1 34 34 H 1.08994 * 110.96783 * 267.29381 * 4 3 2 35 35 H 1.08998 * 110.96981 * 143.53265 * 4 3 2 36 36 H 1.09001 * 110.41080 * 319.73651 * 8 7 5 37 37 H 1.08995 * 110.41057 * 82.18098 * 8 7 5 38 38 H 1.09004 * 110.31837 * 264.95829 * 9 8 7 39 39 H 1.08992 * 110.40870 * 142.79447 * 9 8 7 40 40 H 1.08998 * 110.32404 * 241.10472 * 10 9 8 41 41 H 1.09001 * 110.41128 * 118.93766 * 10 9 8 42 42 H 1.09004 * 109.47207 * 294.86368 * 13 11 7 43 43 H 1.09003 * 109.47055 * 54.86321 * 13 11 7 44 44 H 0.96999 * 120.00246 * 4.77330 * 14 13 11 45 45 H 1.08995 * 109.47139 * 300.00100 * 17 15 14 46 46 H 1.08996 * 109.46904 * 60.00081 * 17 15 14 47 47 H 0.96998 * 119.99995 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7489 0.4357 5 6 3.6898 -0.7377 0.0102 6 1 4.2347 -1.3454 0.7326 7 7 4.2689 -0.8930 -1.3309 8 6 3.3639 -0.3364 -2.3693 9 6 3.8041 -1.0253 -3.6789 10 6 4.4853 -2.3356 -3.2331 11 6 4.3993 -2.3282 -1.6917 12 1 3.5242 -2.8853 -1.3570 13 6 5.6733 -2.9177 -1.0833 14 7 5.7195 -4.3579 -1.3474 15 6 6.7076 -5.1083 -0.8212 16 8 7.5590 -4.5911 -0.1293 17 6 6.7554 -6.5897 -1.0934 18 16 8.1885 -7.3111 -0.2557 19 6 8.0030 -8.9980 -0.7298 20 1 7.1770 -9.2942 -1.3594 21 6 8.9184 -9.9461 -0.2941 22 7 9.9247 -9.5852 0.4736 23 14 8.7220 -11.7342 -0.7974 24 1 7.5192 -11.8776 -1.6565 25 1 9.9239 -12.1708 -1.5525 26 1 8.5672 -12.5759 0.4163 27 6 2.2236 -1.1097 0.0005 28 8 1.7947 -2.2442 -0.0067 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.8983 1.9384 0.7101 33 1 2.3306 1.6429 -1.0005 34 1 3.8269 0.8450 1.5141 35 1 4.4753 1.3012 -0.0967 36 1 2.3267 -0.5817 -2.1407 37 1 3.4920 0.7433 -2.4461 38 1 4.5114 -0.3956 -4.2186 39 1 2.9380 -1.2425 -4.3039 40 1 5.5268 -2.3491 -3.5541 41 1 3.9539 -3.1971 -3.6377 42 1 6.5446 -2.4384 -1.5297 43 1 5.6754 -2.7455 -0.0070 44 1 5.0389 -4.7716 -1.9011 45 1 5.8436 -7.0571 -0.7218 46 1 6.8392 -6.7594 -2.1669 47 1 10.5646 -10.2476 0.7778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753097770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:19 Heat of formation + Delta-G solvation = -82.618809 kcal Electronic energy + Delta-G solvation = -27719.231532 eV Core-core repulsion = 23834.180519 eV Total energy + Delta-G solvation = -3885.051014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.31472 -40.67152 -39.24729 -37.60993 -35.77281 -34.59032 -34.21659 -32.02526 -31.14873 -29.88946 -28.05583 -27.69420 -27.27344 -25.76169 -22.99118 -22.28664 -21.79608 -21.41340 -20.26726 -19.80501 -18.29594 -17.84279 -17.73907 -17.51970 -16.88851 -16.69736 -16.56092 -16.21538 -15.96375 -15.66219 -15.11250 -14.95595 -14.90075 -14.66385 -14.55933 -14.26378 -14.09088 -13.72379 -13.51931 -13.42394 -13.17291 -13.16321 -13.13838 -12.95158 -12.90495 -12.60349 -12.27455 -12.09642 -11.98052 -11.88938 -11.71554 -11.54319 -11.34488 -11.16238 -11.00736 -10.28631 -10.16444 -9.77548 -9.59133 -8.67337 -8.35225 -6.13292 1.24495 1.31752 1.41060 1.45795 1.57536 1.58785 1.98715 2.15027 2.26777 2.86722 2.98769 3.26660 3.31536 3.38325 3.49373 3.67156 3.93666 3.95411 4.01743 4.09575 4.15005 4.23202 4.27665 4.32543 4.38605 4.45323 4.49129 4.58373 4.60521 4.64997 4.73060 4.80247 4.82827 4.89906 4.98649 5.04499 5.09325 5.16499 5.19775 5.34511 5.41780 5.47224 5.67572 5.76357 5.97714 6.19802 6.44374 6.99307 7.05982 7.19739 8.74384 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.002065 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.363676 B =13557.769417 C =13702.327086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.618 5.618 3 C 0.096 3.904 4 C -0.116 4.116 5 C 0.032 3.968 6 H 0.098 0.902 7 N -0.470 5.470 8 C 0.027 3.973 9 C -0.119 4.119 10 C -0.122 4.122 11 C 0.048 3.952 12 H 0.059 0.941 13 C 0.145 3.855 14 N -0.712 5.712 15 C 0.535 3.465 16 O -0.563 6.563 17 C -0.129 4.129 18 S -0.149 6.149 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.274 1.274 27 C 0.482 3.518 28 O -0.577 6.577 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.037 0.963 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.413 0.587 45 H 0.106 0.894 46 H 0.112 0.888 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.444 28.061 -7.692 36.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.351 5.351 3 C -0.025 4.025 4 C -0.153 4.153 5 C -0.080 4.080 6 H 0.116 0.884 7 N -0.195 5.195 8 C -0.100 4.100 9 C -0.157 4.157 10 C -0.160 4.160 11 C -0.061 4.061 12 H 0.077 0.923 13 C 0.020 3.980 14 N -0.366 5.366 15 C 0.321 3.679 16 O -0.441 6.441 17 C -0.281 4.281 18 S 0.078 5.922 19 C -0.693 4.693 20 H 0.100 0.900 21 C -0.193 4.193 22 N -0.547 5.547 23 Si 0.822 3.178 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.199 1.199 27 C 0.268 3.732 28 O -0.457 6.457 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.137 0.863 36 H 0.055 0.945 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.249 0.751 45 H 0.124 0.876 46 H 0.130 0.870 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.718 28.629 -6.440 35.354 hybrid contribution -1.955 -2.561 -0.732 3.304 sum -21.673 26.069 -7.172 34.652 Atomic orbital electron populations 1.21701 0.77203 1.03711 1.02549 1.48478 1.07345 1.07723 1.71583 1.22509 0.89688 0.86310 1.04004 1.22717 0.97704 0.91335 1.03586 1.22885 0.89754 1.01363 0.94041 0.88360 1.65590 1.42144 1.11512 1.00239 1.23400 0.93787 1.01737 0.91070 1.22299 1.01055 0.95761 0.96570 1.22413 1.02470 0.99178 0.91941 1.22857 0.96186 0.90033 0.96998 0.92307 1.21073 0.97876 0.79232 0.99789 1.45652 1.28998 1.08709 1.53252 1.20045 0.80933 0.88191 0.78717 1.90689 1.39913 1.74261 1.39273 1.23363 1.04256 0.94537 1.05895 1.85554 1.32635 1.06494 1.67476 1.23233 1.15752 0.93132 1.37229 0.89989 1.26148 0.93885 1.04842 0.94388 1.70188 1.14213 1.36470 1.33868 0.84885 0.78775 0.75856 0.78287 1.18135 1.19757 1.19917 1.22120 0.91414 0.84521 0.75126 1.90708 1.79699 1.23232 1.52027 0.91877 0.92840 0.87764 0.87413 0.88991 0.88258 0.86309 0.94492 0.86918 0.89320 0.90373 0.90375 0.90419 0.91125 0.93249 0.75083 0.87557 0.86974 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 10.96 127.77 1.40 2.29 16 2 N -0.62 -8.03 2.79 -842.88 -2.36 -10.38 16 3 C 0.10 0.51 6.52 86.83 0.57 1.08 16 4 C -0.12 -0.92 6.64 31.65 0.21 -0.71 16 5 C 0.03 0.55 3.09 44.91 0.14 0.69 16 6 H 0.10 2.08 7.19 -2.39 -0.02 2.06 16 7 N -0.47 -7.88 5.04 -831.73 -4.19 -12.07 16 8 C 0.03 0.34 4.82 86.45 0.42 0.75 16 9 C -0.12 -1.41 7.00 31.49 0.22 -1.19 16 10 C -0.12 -1.96 6.33 31.49 0.20 -1.76 16 11 C 0.05 1.00 2.21 45.06 0.10 1.10 16 12 H 0.06 1.51 6.23 -2.39 -0.01 1.49 16 13 C 0.14 3.82 5.27 86.38 0.45 4.28 16 14 N -0.71 -20.59 5.45 -463.06 -2.52 -23.12 16 15 C 0.54 21.22 7.85 87.66 0.69 21.91 16 16 O -0.56 -27.46 15.86 -3.06 -0.05 -27.51 16 17 C -0.13 -5.41 6.16 71.24 0.44 -4.98 16 18 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 19 C -0.55 -31.94 9.50 67.96 0.65 -31.30 16 20 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 21 C 0.01 0.70 5.49 84.86 0.47 1.17 16 22 N -0.91 -56.91 13.22 21.65 0.29 -56.63 16 23 Si 1.00 44.56 29.55 68.60 2.03 46.59 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 C 0.48 10.17 5.23 87.90 0.46 10.63 16 28 O -0.58 -17.93 16.17 -3.06 -0.05 -17.98 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.53 16 30 H 0.05 0.78 7.93 -2.39 -0.02 0.76 16 31 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.09 0.22 6.79 -2.38 -0.02 0.20 16 34 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.12 0.67 8.08 -2.39 -0.02 0.65 16 36 H 0.04 0.57 5.71 -2.39 -0.01 0.55 16 37 H 0.11 0.84 7.18 -2.39 -0.02 0.82 16 38 H 0.09 0.86 8.14 -2.38 -0.02 0.85 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 1.32 7.74 -2.39 -0.02 1.30 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.94 7.97 -2.39 -0.02 1.92 16 43 H 0.05 1.49 7.23 -2.39 -0.02 1.48 16 44 H 0.41 9.47 8.37 -92.71 -0.78 8.70 16 45 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 46 H 0.11 4.19 8.14 -2.40 -0.02 4.17 16 47 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -85.74 386.85 -1.41 -87.15 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.20 Total: 19.69 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 6.40 Total: 3.94 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -8.78 Total: -102.19 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -0.10 Total: -45.49 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -85.74 -1.41 -87.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753097770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.528 kcal (2) G-P(sol) polarization free energy of solvation -85.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds