Wall clock time and date at job start Sat Apr 11 2020 06:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00003 * 2 1 4 4 N 1.46502 * 109.47307 * 124.99811 * 3 2 1 5 5 C 1.34771 * 120.00056 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00124 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00033 * 179.97438 * 5 4 3 8 8 N 1.46900 * 109.47578 * 180.02562 * 7 5 4 9 9 C 1.48538 * 110.99488 * 307.39860 * 8 7 5 10 10 C 1.54933 * 103.22298 * 200.27653 * 9 8 7 11 11 C 1.54601 * 102.92524 * 37.41727 * 10 9 8 12 12 H 1.08996 * 110.39384 * 219.08378 * 11 10 9 13 13 N 1.46497 * 110.30926 * 96.95384 * 11 10 9 14 14 C 1.46496 * 120.00129 * 304.28932 * 13 11 10 15 15 C 1.34777 * 119.99525 * 124.28439 * 13 11 10 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 13 11 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 13 11 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 13 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00584 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47157 * 59.99781 * 23 21 19 25 25 H 1.48496 * 109.47271 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46802 * 300.00045 * 23 21 19 27 27 C 1.47896 * 111.00280 * 190.00517 * 8 7 5 28 28 H 1.08001 * 119.99744 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.00186 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99788 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.46924 * 5.00328 * 3 2 1 32 32 H 1.08997 * 109.47264 * 245.00224 * 3 2 1 33 33 H 0.97001 * 119.99427 * 359.97438 * 4 3 2 34 34 H 1.09004 * 109.47244 * 60.00192 * 7 5 4 35 35 H 1.09006 * 109.47444 * 300.00863 * 7 5 4 36 36 H 1.08995 * 110.66891 * 318.70837 * 9 8 7 37 37 H 1.09001 * 110.66409 * 81.68041 * 9 8 7 38 38 H 1.09005 * 110.72620 * 279.05333 * 10 9 8 39 39 H 1.09010 * 110.72546 * 155.77499 * 10 9 8 40 40 H 1.08997 * 109.47115 * 269.99822 * 14 13 11 41 41 H 1.08995 * 109.47364 * 30.00213 * 14 13 11 42 42 H 1.09002 * 109.47090 * 149.99764 * 14 13 11 43 43 H 1.09009 * 109.47352 * 300.27556 * 17 15 13 44 44 H 1.08998 * 109.47585 * 60.27844 * 17 15 13 45 45 H 0.97003 * 120.00297 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.91940 * 26.48273 * 27 8 7 47 47 H 1.09009 * 110.08214 * 265.28754 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 3.7790 2.4086 1.3329 6 8 3.7151 3.3555 0.5778 7 6 4.7354 2.4365 2.4970 8 7 5.4700 3.7086 2.4970 9 6 6.0999 3.9594 1.1754 10 6 7.2091 4.9908 1.5014 11 6 7.7273 4.5175 2.8790 12 1 7.9415 5.3735 3.5188 13 7 8.9272 3.6932 2.7151 14 6 8.8897 2.5078 1.8550 15 6 10.0655 4.0254 3.3556 16 8 10.0964 5.0065 4.0680 17 6 11.2981 3.1740 3.1919 18 16 12.6478 3.8708 4.1762 19 6 13.9237 2.7122 3.8098 20 1 13.7260 1.8832 3.1463 21 6 15.1830 2.8653 4.3728 22 7 15.4244 3.8765 5.1803 23 14 16.5359 1.6374 3.9838 24 1 16.7948 1.6330 2.5215 25 1 17.7759 2.0222 4.7044 26 1 16.1124 0.2812 4.4156 27 6 6.5803 3.6796 3.4737 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 3.0445 0.5747 1.7356 34 1 5.4401 1.6096 2.4082 35 1 4.1773 2.3396 3.4283 36 1 6.5326 3.0426 0.7752 37 1 5.3751 4.3780 0.4771 38 1 6.7931 5.9960 1.5703 39 1 8.0037 4.9513 0.7562 40 1 8.5958 1.6399 2.4452 41 1 8.1679 2.6633 1.0533 42 1 9.8776 2.3384 1.4267 43 1 11.0870 2.1598 3.5314 44 1 11.5881 3.1525 2.1415 45 1 16.3044 3.9834 5.5741 46 1 6.9120 2.6529 3.6285 47 1 6.2570 4.1119 4.4208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753429469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:27 Heat of formation + Delta-G solvation = -51.830232 kcal Electronic energy + Delta-G solvation = -26934.577487 eV Core-core repulsion = 23050.861566 eV Total energy + Delta-G solvation = -3883.715921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.60570 -40.74188 -39.16858 -36.82141 -36.02810 -34.58042 -33.85800 -32.87937 -30.81827 -29.68462 -28.56175 -27.69800 -27.34185 -25.87511 -22.58443 -22.33740 -21.68769 -20.77689 -20.31048 -19.59191 -18.51244 -17.94590 -17.57277 -17.08016 -16.88517 -16.87393 -16.64032 -16.41149 -16.12410 -15.72075 -15.34570 -15.03374 -14.67345 -14.55286 -14.28299 -14.11097 -13.97021 -13.72866 -13.61420 -13.39044 -13.22729 -13.16392 -13.10884 -12.87298 -12.73127 -12.62950 -12.47161 -12.24554 -12.04846 -11.89855 -11.71716 -11.12471 -10.91016 -10.82813 -10.47765 -10.26868 -10.03042 -9.79733 -9.36196 -8.67217 -8.33949 -6.12629 1.16780 1.24851 1.44134 1.45451 1.54271 1.55296 1.61932 2.02971 2.26944 2.28537 3.00078 3.04990 3.25768 3.51154 3.63546 3.76967 3.84526 3.92845 4.05717 4.08354 4.16357 4.21120 4.29500 4.33765 4.35749 4.45810 4.46285 4.57524 4.57871 4.64544 4.76202 4.80349 4.87771 5.00198 5.02758 5.10498 5.12248 5.41609 5.43091 5.46374 5.65165 5.78055 5.82876 5.87946 6.19547 6.23572 6.56591 7.06975 7.11781 7.26948 8.74984 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022672 B = 0.001847 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.720173 B =15158.599764 C =15966.301602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.181 4.181 3 C 0.147 3.853 4 N -0.716 5.716 5 C 0.511 3.489 6 O -0.565 6.565 7 C 0.027 3.973 8 N -0.511 5.511 9 C 0.041 3.959 10 C -0.129 4.129 11 C 0.126 3.874 12 H 0.085 0.915 13 N -0.601 5.601 14 C 0.065 3.935 15 C 0.533 3.467 16 O -0.564 6.564 17 C -0.122 4.122 18 S -0.152 6.152 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.261 1.261 27 C 0.038 3.962 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.417 0.583 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.067 0.933 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.683 -12.680 -11.301 34.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.199 4.199 3 C 0.024 3.976 4 N -0.370 5.370 5 C 0.298 3.702 6 O -0.443 6.443 7 C -0.104 4.104 8 N -0.236 5.236 9 C -0.086 4.086 10 C -0.168 4.168 11 C 0.022 3.978 12 H 0.103 0.897 13 N -0.335 5.335 14 C -0.077 4.077 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.273 4.273 18 S 0.075 5.925 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.091 4.091 28 H 0.136 0.864 29 H 0.116 0.884 30 H 0.148 0.852 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.253 0.747 34 H 0.107 0.893 35 H 0.144 0.856 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -29.976 -10.086 -10.570 33.347 hybrid contribution 1.474 -2.259 -0.703 2.787 sum -28.502 -12.345 -11.273 33.043 Atomic orbital electron populations 1.24173 0.95812 1.03143 0.96910 1.22959 0.96304 0.97524 1.03105 1.20369 0.91536 0.96380 0.89302 1.45882 1.40253 1.19860 1.30989 1.20832 0.81300 0.82006 0.86082 1.90662 1.68649 1.36397 1.48615 1.22343 0.97112 0.92556 0.98398 1.64700 1.22570 1.30851 1.05463 1.23481 0.95415 0.97820 0.91894 1.22864 0.98117 1.00318 0.95462 1.21899 0.83762 0.93963 0.98149 0.89706 1.47884 1.09485 1.28726 1.47447 1.22162 1.04491 0.86436 0.94619 1.20176 0.84424 0.84506 0.78813 1.90680 1.84407 1.29253 1.39887 1.23370 0.95944 1.02817 1.05200 1.85608 1.04967 1.39821 1.62132 1.23166 0.98041 1.13869 1.34420 0.89859 1.26125 1.00758 0.98116 0.94060 1.70182 1.23564 1.30764 1.30223 0.85008 0.76220 0.77946 0.78851 1.18694 1.20445 1.18551 1.23176 0.89253 1.00115 0.96548 0.86384 0.88385 0.85217 0.92287 0.91664 0.74653 0.89267 0.85582 0.92980 0.88602 0.89932 0.90309 0.90793 0.89111 0.90214 0.87310 0.87475 0.92003 0.91505 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 14.32 67.78 0.97 0.15 16 2 C -0.18 -1.03 9.63 25.64 0.25 -0.78 16 3 C 0.15 1.51 6.11 85.63 0.52 2.03 16 4 N -0.72 -6.64 5.55 -466.80 -2.59 -9.23 16 5 C 0.51 7.83 7.54 87.66 0.66 8.49 16 6 O -0.56 -13.54 13.52 -3.02 -0.04 -13.58 16 7 C 0.03 0.32 5.52 85.56 0.47 0.79 16 8 N -0.51 -9.34 5.26 -887.57 -4.67 -14.01 16 9 C 0.04 0.79 4.93 86.65 0.43 1.22 16 10 C -0.13 -2.78 6.14 31.80 0.20 -2.58 16 11 C 0.13 3.14 3.44 45.87 0.16 3.29 16 12 H 0.08 2.63 6.96 -2.39 -0.02 2.61 16 13 N -0.60 -16.08 2.72 -817.70 -2.23 -18.31 16 14 C 0.06 1.17 9.21 127.77 1.18 2.34 16 15 C 0.53 20.15 7.69 87.66 0.67 20.82 16 16 O -0.56 -26.65 15.22 -3.04 -0.05 -26.70 16 17 C -0.12 -4.86 4.71 71.24 0.34 -4.53 16 18 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 19 C -0.55 -31.12 9.50 67.95 0.65 -30.47 16 20 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 21 C 0.01 0.81 5.49 84.86 0.47 1.27 16 22 N -0.91 -55.97 13.22 21.65 0.29 -55.69 16 23 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 27 C 0.04 0.73 6.21 86.45 0.54 1.26 16 28 H 0.12 0.28 8.06 -2.91 -0.02 0.25 16 29 H 0.10 0.54 7.84 -2.91 -0.02 0.52 16 30 H 0.13 0.39 8.06 -2.91 -0.02 0.36 16 31 H 0.06 0.76 7.79 -2.38 -0.02 0.75 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.42 1.32 8.46 -92.71 -0.78 0.54 16 34 H 0.09 0.68 7.81 -2.39 -0.02 0.66 16 35 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.05 0.87 5.87 -2.39 -0.01 0.86 16 37 H 0.10 2.27 5.96 -2.39 -0.01 2.25 16 38 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.08 1.69 7.89 -2.38 -0.02 1.67 16 40 H 0.07 1.07 7.92 -2.39 -0.02 1.05 16 41 H 0.09 1.32 4.76 -2.39 -0.01 1.31 16 42 H 0.08 1.45 6.45 -2.39 -0.02 1.44 16 43 H 0.11 3.87 8.11 -2.39 -0.02 3.85 16 44 H 0.11 3.86 7.41 -2.40 -0.02 3.85 16 45 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 46 H 0.07 1.12 6.67 -2.39 -0.02 1.11 16 47 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -81.50 392.09 -0.74 -82.24 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.20 Total: 16.36 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 7.49 Total: 3.30 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -9.20 Total: -97.23 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.09 Total: -40.28 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -81.50 -0.74 -82.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753429469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.411 kcal (2) G-P(sol) polarization free energy of solvation -81.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds