Wall clock time and date at job start Sat Apr 11 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 111.00181 * 2 1 4 4 C 1.52999 * 109.47088 * 286.41265 * 3 2 1 5 5 H 1.08994 * 109.87357 * 63.97624 * 4 3 2 6 6 C 1.54327 * 109.88122 * 184.99822 * 4 3 2 7 7 C 1.55158 * 102.94133 * 141.60411 * 6 4 3 8 8 C 1.54909 * 101.58037 * 324.49946 * 7 6 4 9 9 N 1.47020 * 109.87883 * 302.80220 * 4 3 2 10 10 C 1.34784 * 125.64761 * 61.62376 * 9 4 3 11 11 O 1.21279 * 119.99673 * 359.97438 * 10 9 4 12 12 C 1.50696 * 119.99764 * 179.97438 * 10 9 4 13 13 S 1.81003 * 109.46808 * 180.02562 * 12 10 9 14 14 C 1.76202 * 99.99876 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00263 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31638 * 119.99613 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00326 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47086 * 90.00027 * 18 16 14 20 20 H 1.48503 * 109.47249 * 209.99857 * 18 16 14 21 21 H 1.48493 * 109.47092 * 329.99713 * 18 16 14 22 22 C 1.46907 * 110.99950 * 123.95128 * 2 1 3 23 23 H 1.08998 * 110.43084 * 47.11608 * 22 2 1 24 24 C 1.54625 * 110.48421 * 169.79633 * 22 2 1 25 25 C 1.54478 * 101.76484 * 143.48148 * 24 22 2 26 26 N 1.46765 * 105.47207 * 334.58233 * 25 24 22 27 27 C 1.34423 * 111.30162 * 17.01793 * 26 25 24 28 28 O 1.21276 * 124.94483 * 179.56039 * 27 26 25 29 29 H 1.08995 * 109.46722 * 59.99864 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46901 * 300.00054 * 1 2 3 32 32 H 1.08998 * 109.47324 * 166.40650 * 3 2 1 33 33 H 1.09009 * 109.46688 * 46.40865 * 3 2 1 34 34 H 1.08995 * 110.71572 * 259.97250 * 6 4 3 35 35 H 1.08999 * 110.71800 * 23.06584 * 6 4 3 36 36 H 1.09001 * 110.99902 * 82.57374 * 7 6 4 37 37 H 1.08997 * 111.00123 * 206.38583 * 7 6 4 38 38 H 1.09004 * 110.36552 * 155.84748 * 8 7 6 39 39 H 1.09001 * 110.36557 * 278.05306 * 8 7 6 40 40 H 1.08999 * 109.47223 * 299.99954 * 12 10 9 41 41 H 1.09002 * 109.47642 * 60.00406 * 12 10 9 42 42 H 0.97002 * 119.99823 * 180.02562 * 17 16 14 43 43 H 1.09005 * 110.97087 * 261.59723 * 24 22 2 44 44 H 1.09002 * 110.97163 * 25.35875 * 24 22 2 45 45 H 1.08998 * 110.24820 * 215.58392 * 25 24 22 46 46 H 1.08999 * 110.25191 * 93.58063 * 25 24 22 47 47 H 0.97002 * 124.34992 * 197.03992 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7978 1.9936 -1.3837 5 1 0.7335 2.0803 -1.6023 6 6 2.4589 3.3873 -1.4318 7 6 3.0643 3.4357 -2.8596 8 6 3.5040 1.9640 -3.0609 9 7 2.4550 1.1634 -2.4037 10 6 2.1493 -0.1177 -2.6901 11 8 1.2635 -0.6802 -2.0820 12 6 2.9082 -0.8509 -3.7659 13 16 2.2685 -2.5378 -3.9126 14 6 3.3035 -3.1465 -5.2021 15 1 4.0536 -2.5050 -5.6408 16 6 3.1556 -4.4507 -5.6534 17 7 3.9292 -4.9056 -6.6164 18 14 1.8589 -5.5604 -4.8941 19 1 0.5856 -5.4195 -5.6452 20 1 2.3169 -6.9716 -4.9566 21 1 1.6434 -5.1722 -3.4771 22 6 1.9955 -0.7660 1.1377 23 1 1.4829 -1.7243 1.2210 24 6 3.5203 -0.9756 0.9896 25 6 3.9969 -0.8666 2.4550 26 7 2.9886 -0.0449 3.1346 27 6 1.8523 0.0243 2.4197 28 8 0.8571 0.6313 2.7541 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.0582 1.3527 0.2415 33 1 1.4641 1.9646 0.7444 34 1 1.7138 4.1722 -1.3020 35 1 3.2398 3.4700 -0.6759 36 1 2.3113 3.7224 -3.5937 37 1 3.9208 4.1087 -2.8981 38 1 3.5539 1.7249 -4.1232 39 1 4.4700 1.7886 -2.5875 40 1 2.7841 -0.3318 -4.7163 41 1 3.9662 -0.8845 -3.5058 42 1 3.8256 -5.8170 -6.9320 43 1 3.7406 -1.9615 0.5801 44 1 3.9641 -0.1919 0.3757 45 1 4.9717 -0.3809 2.4995 46 1 4.0465 -1.8558 2.9102 47 1 3.1247 0.3925 3.9897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755190832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:35 Heat of formation + Delta-G solvation = -30.775805 kcal Electronic energy + Delta-G solvation = -29398.737108 eV Core-core repulsion = 25515.934176 eV Total energy + Delta-G solvation = -3882.802932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93103 -39.71102 -36.99767 -36.55492 -36.00150 -32.39317 -31.74438 -30.95377 -29.93062 -28.62133 -27.31345 -26.12035 -25.55861 -23.63622 -22.33729 -21.83265 -21.16647 -19.80409 -18.71879 -17.62059 -17.52760 -16.85821 -16.72412 -16.08076 -15.69296 -14.99112 -14.84579 -14.64861 -14.46534 -14.08371 -13.95308 -13.92050 -13.71545 -13.35748 -13.23475 -12.86766 -12.77541 -12.50358 -12.46202 -12.28577 -11.92541 -11.67257 -11.46618 -11.42058 -11.29547 -11.19205 -11.16246 -10.97617 -10.84876 -10.71269 -10.49757 -10.28632 -9.81190 -9.33386 -8.97370 -8.95789 -8.44156 -8.39982 -7.63835 -6.82646 -6.24757 -3.94210 2.43363 2.85331 3.15988 3.30700 3.36418 3.39353 3.53016 3.70890 3.87467 4.31348 4.36607 4.42052 4.44988 4.54827 4.71399 4.81888 4.87603 4.90155 5.01116 5.14656 5.21593 5.25596 5.29281 5.36483 5.40273 5.49762 5.52086 5.58331 5.68137 5.72151 5.82481 5.86917 5.90911 5.91986 6.00151 6.03143 6.11075 6.16595 6.39433 6.55432 6.64094 6.79549 7.13638 7.25554 7.95262 7.98850 8.08165 8.46378 8.90158 9.22121 10.84749 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011487 B = 0.004004 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.884752 B = 6990.815576 C = 8353.841033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.469 5.469 3 C 0.034 3.966 4 C 0.148 3.852 5 H 0.071 0.929 6 C -0.127 4.127 7 C -0.131 4.131 8 C 0.100 3.900 9 N -0.617 5.617 10 C 0.541 3.459 11 O -0.466 6.466 12 C -0.114 4.114 13 S -0.139 6.139 14 C -0.520 4.520 15 H 0.086 0.914 16 C 0.095 3.905 17 N -0.883 5.883 18 Si 0.857 3.143 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.235 1.235 22 C 0.052 3.948 23 H 0.117 0.883 24 C -0.124 4.124 25 C 0.100 3.900 26 N -0.735 5.735 27 C 0.489 3.511 28 O -0.535 6.535 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.269 0.731 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 15.947 15.921 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.191 5.191 3 C -0.095 4.095 4 C 0.044 3.956 5 H 0.089 0.911 6 C -0.166 4.166 7 C -0.169 4.169 8 C -0.023 4.023 9 N -0.356 5.356 10 C 0.327 3.673 11 O -0.335 6.335 12 C -0.265 4.265 13 S 0.087 5.913 14 C -0.667 4.667 15 H 0.104 0.896 16 C -0.113 4.113 17 N -0.520 5.520 18 Si 0.682 3.318 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.159 1.159 22 C -0.060 4.060 23 H 0.135 0.865 24 C -0.162 4.162 25 C -0.025 4.025 26 N -0.391 5.391 27 C 0.273 3.727 28 O -0.411 6.411 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.083 14.846 16.289 22.039 hybrid contribution 0.697 0.584 0.477 1.027 sum 0.779 15.431 16.765 22.799 Atomic orbital electron populations 1.22261 0.86000 1.02292 0.99929 1.62751 1.09368 1.11681 1.35298 1.22759 1.00206 0.90029 0.96491 1.21434 0.97373 0.89121 0.87693 0.91095 1.22648 1.00512 0.95744 0.97647 1.22755 1.01223 0.96243 0.96722 1.22229 0.91464 0.90204 0.98427 1.48397 1.37210 1.11799 1.38175 1.19657 0.84486 0.79523 0.83602 1.90735 1.29893 1.64891 1.48019 1.23245 1.02780 1.00833 0.99633 1.84685 1.50819 1.05658 1.50131 1.22363 1.21930 1.01527 1.20907 0.89638 1.24708 0.95600 0.97001 0.93996 1.69950 1.38178 1.17189 1.26718 0.86730 0.82056 0.80385 0.82627 1.19350 1.20163 1.15868 1.22661 0.97508 0.98897 0.86977 0.86510 1.22708 0.93635 1.05148 0.94723 1.22142 0.91798 0.95419 0.93149 1.46364 1.16044 1.52791 1.23944 1.22391 0.82281 0.80881 0.87120 1.90708 1.31588 1.44832 1.73963 0.91454 0.91682 0.95131 0.91027 0.93829 0.90333 0.90758 0.90602 0.90104 0.90580 0.91876 0.89511 0.89390 0.92064 0.88213 0.89536 0.90370 0.90857 0.75847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 7.54 60.07 0.45 1.09 16 2 N -0.47 -6.60 1.67 -234.89 -0.39 -7.00 16 3 C 0.03 0.42 3.44 -3.82 -0.01 0.40 16 4 C 0.15 1.72 3.01 -66.95 -0.20 1.52 16 5 H 0.07 0.92 7.02 -51.93 -0.36 0.55 16 6 C -0.13 -1.04 6.48 -24.89 -0.16 -1.20 16 7 C -0.13 -1.02 7.09 -24.58 -0.17 -1.19 16 8 C 0.10 1.02 6.69 -2.53 -0.02 1.01 16 9 N -0.62 -8.16 3.06 -163.02 -0.50 -8.66 16 10 C 0.54 9.32 7.45 -10.98 -0.08 9.24 16 11 O -0.47 -9.05 10.85 5.56 0.06 -8.99 16 12 C -0.11 -2.20 5.16 36.00 0.19 -2.01 16 13 S -0.14 -3.44 18.55 -107.50 -1.99 -5.43 16 14 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 15 H 0.09 2.57 8.03 -52.49 -0.42 2.14 16 16 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 17 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 18 Si 0.86 21.65 27.74 -169.99 -4.72 16.93 16 19 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.23 -5.87 6.74 56.52 0.38 -5.49 16 22 C 0.05 0.66 3.00 -67.72 -0.20 0.46 16 23 H 0.12 1.55 8.00 -51.93 -0.42 1.13 16 24 C -0.12 -1.26 6.56 -25.10 -0.16 -1.42 16 25 C 0.10 0.74 7.78 -3.12 -0.02 0.71 16 26 N -0.74 -6.74 6.24 -59.20 -0.37 -7.11 16 27 C 0.49 6.21 6.66 -10.86 -0.07 6.14 16 28 O -0.53 -8.66 15.43 5.56 0.09 -8.57 16 29 H 0.07 1.04 6.33 -51.93 -0.33 0.72 16 30 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 31 H 0.03 0.47 6.27 -51.93 -0.33 0.14 16 32 H 0.07 0.82 5.98 -51.93 -0.31 0.51 16 33 H 0.04 0.57 7.05 -51.92 -0.37 0.21 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.55 7.80 -51.93 -0.41 0.15 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.80 7.48 -51.93 -0.39 0.41 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.62 7.85 -51.92 -0.41 1.22 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 0.92 6.25 -51.93 -0.32 0.60 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.40 3.04 8.96 -40.82 -0.37 2.67 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -34.52 373.39 -9.06 -43.58 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.38 Total: 2.53 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -0.26 Total: 2.90 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.49 Total: -48.58 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.15 Total: -17.56 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.72 Total: 16.93 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.52 -9.06 -43.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755190832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.809 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds