Wall clock time and date at job start Sat Apr 11 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.53004 * 109.46619 * 66.04574 * 3 2 1 5 5 H 1.09000 * 109.87546 * 296.01581 * 4 3 2 6 6 C 1.54326 * 109.87962 * 174.99987 * 4 3 2 7 7 C 1.55154 * 102.94243 * 218.38929 * 6 4 3 8 8 C 1.54907 * 101.58037 * 35.50561 * 7 6 4 9 9 N 1.47019 * 109.88200 * 57.19750 * 4 3 2 10 10 C 1.34774 * 125.64618 * 298.32753 * 9 4 3 11 11 O 1.21287 * 120.00120 * 0.02562 * 10 9 4 12 12 C 1.50704 * 119.99937 * 180.02562 * 10 9 4 13 13 S 1.81010 * 109.47103 * 180.02562 * 12 10 9 14 14 C 1.76193 * 99.99852 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00180 * 359.97438 * 14 13 12 16 16 C 1.38803 * 120.00000 * 180.02562 * 14 13 12 17 17 N 1.31630 * 120.00197 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99627 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47246 * 90.00723 * 18 16 14 20 20 H 1.48504 * 109.46893 * 210.00236 * 18 16 14 21 21 H 1.48505 * 109.47346 * 330.00102 * 18 16 14 22 22 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 23 23 H 1.08998 * 110.43374 * 64.66060 * 22 2 1 24 24 C 1.54629 * 110.48643 * 302.11740 * 22 2 1 25 25 C 1.54487 * 101.76380 * 216.52498 * 24 22 2 26 26 N 1.46769 * 105.46954 * 25.41397 * 25 24 22 27 27 C 1.34643 * 111.33982 * 342.86916 * 26 25 24 28 28 O 1.21284 * 125.07462 * 180.52160 * 27 26 25 29 29 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 30 30 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 31 31 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 32 32 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 33 33 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 34 34 H 1.08997 * 110.72434 * 336.75701 * 6 4 3 35 35 H 1.09002 * 110.71703 * 99.85053 * 6 4 3 36 36 H 1.09003 * 111.00370 * 153.57813 * 7 6 4 37 37 H 1.08993 * 111.00553 * 277.39064 * 7 6 4 38 38 H 1.09001 * 110.36950 * 81.82994 * 8 7 6 39 39 H 1.09006 * 110.36559 * 204.03946 * 8 7 6 40 40 H 1.08999 * 109.47194 * 300.00461 * 12 10 9 41 41 H 1.08997 * 109.46916 * 60.00634 * 12 10 9 42 42 H 0.96999 * 119.99607 * 179.97438 * 17 16 14 43 43 H 1.08998 * 110.96791 * 334.63599 * 24 22 2 44 44 H 1.08993 * 110.97316 * 98.37113 * 24 22 2 45 45 H 1.08997 * 110.24444 * 144.41577 * 25 24 22 46 46 H 1.08995 * 110.24338 * 266.32983 * 25 24 22 47 47 H 0.96999 * 124.33997 * 162.98625 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 1 0.5487 2.1513 1.4005 6 6 2.2858 3.4536 1.3815 7 6 2.7117 3.5708 2.8689 8 6 3.1191 2.1115 3.1916 9 7 2.1563 1.2779 2.4491 10 6 1.8134 0.0112 2.7563 11 8 1.0065 -0.5816 2.0718 12 6 2.4327 -0.6686 3.9502 13 16 1.7750 -2.3486 4.0964 14 6 2.6424 -2.8931 5.5301 15 1 3.3348 -2.2296 6.0268 16 6 2.4366 -4.1751 6.0207 17 7 3.0850 -4.5821 7.0915 18 14 1.2395 -5.3230 5.1611 19 1 1.9604 -6.1037 4.1238 20 1 0.6442 -6.2519 6.1551 21 1 0.1621 -4.5259 4.5213 22 6 1.9954 -0.7660 -1.1377 23 1 1.7237 -0.2862 -2.0779 24 6 1.4704 -2.2200 -1.1004 25 6 2.6943 -3.0100 -1.6146 26 7 3.8601 -2.1775 -1.2953 27 6 3.4978 -0.9080 -1.0306 28 8 4.2619 -0.0099 -0.7467 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.4513 -0.9233 31 1 -0.3633 0.5740 0.8525 32 1 3.0798 1.3443 -0.1082 33 1 1.5612 1.9273 -0.8309 34 1 3.1556 3.5020 0.7264 35 1 1.5653 4.2292 1.1216 36 1 3.5594 4.2469 2.9805 37 1 1.8755 3.8902 3.4907 38 1 4.1347 1.9161 2.8472 39 1 3.0396 1.9234 4.2624 40 1 3.5143 -0.7120 3.8231 41 1 2.1951 -0.1053 4.8527 42 1 2.9408 -5.4779 7.4344 43 1 1.2142 -2.5162 -0.0833 44 1 0.6172 -2.3438 -1.7673 45 1 2.7652 -3.9702 -1.1037 46 1 2.6205 -3.1609 -2.6916 47 1 4.7747 -2.4999 -1.2788 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755190833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:38 Heat of formation + Delta-G solvation = -27.294142 kcal Electronic energy + Delta-G solvation = -29640.404790 eV Core-core repulsion = 25757.752834 eV Total energy + Delta-G solvation = -3882.651956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60398 -39.64163 -36.92622 -36.57360 -35.94107 -32.38144 -31.67468 -30.98488 -29.41315 -28.57515 -27.54524 -26.05562 -25.54514 -23.67375 -21.96320 -21.57672 -21.02775 -19.85804 -18.64859 -17.54405 -17.36030 -16.88962 -16.61612 -16.23637 -15.40523 -14.98863 -14.79413 -14.52271 -14.33844 -14.06651 -13.82994 -13.68959 -13.65608 -13.31444 -12.98149 -12.81459 -12.74771 -12.68428 -12.48650 -12.20424 -11.91320 -11.58068 -11.46505 -11.31847 -11.23666 -11.19004 -11.13550 -10.97936 -10.87595 -10.62880 -10.45997 -9.80915 -9.54590 -9.10563 -8.95224 -8.87316 -8.39525 -8.36399 -7.68494 -6.80586 -6.23362 -3.92307 2.59022 2.88896 3.32339 3.33774 3.36304 3.44732 3.51707 3.76241 4.05409 4.32530 4.36870 4.50778 4.54263 4.66568 4.83332 4.89626 4.97303 5.05209 5.14382 5.15729 5.25241 5.34643 5.41609 5.42036 5.47663 5.59686 5.65646 5.68304 5.72428 5.76966 5.79361 5.81563 5.88997 6.01520 6.12672 6.16876 6.22388 6.30329 6.38804 6.71096 6.76103 7.01754 7.23382 7.36037 7.99732 8.03479 8.28520 8.48704 8.94868 9.23220 10.86328 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010065 B = 0.004777 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.269437 B = 5859.914162 C = 7520.341784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.483 5.483 3 C 0.021 3.979 4 C 0.148 3.852 5 H 0.067 0.933 6 C -0.127 4.127 7 C -0.131 4.131 8 C 0.100 3.900 9 N -0.613 5.613 10 C 0.545 3.455 11 O -0.476 6.476 12 C -0.114 4.114 13 S -0.140 6.140 14 C -0.518 4.518 15 H 0.085 0.915 16 C 0.094 3.906 17 N -0.883 5.883 18 Si 0.858 3.142 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.235 1.235 22 C 0.048 3.952 23 H 0.066 0.934 24 C -0.127 4.127 25 C 0.103 3.897 26 N -0.729 5.729 27 C 0.535 3.465 28 O -0.528 6.528 29 H 0.070 0.930 30 H -0.001 1.001 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.269 0.731 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 12.511 -18.159 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.208 5.208 3 C -0.108 4.108 4 C 0.044 3.956 5 H 0.085 0.915 6 C -0.165 4.165 7 C -0.169 4.169 8 C -0.023 4.023 9 N -0.351 5.351 10 C 0.333 3.667 11 O -0.347 6.347 12 C -0.265 4.265 13 S 0.086 5.914 14 C -0.666 4.666 15 H 0.103 0.897 16 C -0.114 4.114 17 N -0.520 5.520 18 Si 0.683 3.317 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.159 1.159 22 C -0.064 4.064 23 H 0.083 0.917 24 C -0.165 4.165 25 C -0.022 4.022 26 N -0.385 5.385 27 C 0.321 3.679 28 O -0.404 6.404 29 H 0.089 0.911 30 H 0.017 0.983 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.611 11.645 -18.443 22.109 hybrid contribution 0.824 0.199 -0.029 0.849 sum -2.787 11.844 -18.472 22.119 Atomic orbital electron populations 1.22183 0.86171 1.02639 0.98038 1.62331 1.08523 1.12365 1.37592 1.23086 1.03897 0.88385 0.95415 1.21469 0.97802 0.89821 0.86546 0.91473 1.22649 1.01122 0.95484 0.97284 1.22738 1.01764 0.96293 0.96068 1.22240 0.93286 0.89710 0.97109 1.48303 1.44635 1.13186 1.28942 1.19601 0.82503 0.79446 0.85200 1.90679 1.32548 1.62567 1.48903 1.23246 1.03581 1.01122 0.98539 1.84529 1.59100 1.08665 1.39091 1.22370 1.29135 1.02951 1.12148 0.89653 1.24718 0.95377 0.97072 0.94239 1.69949 1.41078 1.19050 1.21971 0.86712 0.82960 0.81880 0.80103 1.19428 1.20170 1.15908 1.22279 0.92991 0.96551 0.94575 0.91681 1.22756 0.96741 0.92279 1.04717 1.22061 0.84991 0.95186 0.99915 1.46126 1.10203 1.10775 1.71398 1.20693 0.90717 0.82156 0.74355 1.90601 1.58840 1.42837 1.48154 0.91129 0.98255 0.90898 0.87097 0.95339 0.90436 0.90458 0.90115 0.90725 0.91717 0.90690 0.89509 0.89450 0.92089 0.87403 0.89808 0.89864 0.91469 0.75230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 7.09 60.07 0.43 1.19 16 2 N -0.48 -6.97 1.93 -234.89 -0.45 -7.43 16 3 C 0.02 0.28 4.39 -3.82 -0.02 0.26 16 4 C 0.15 1.87 2.90 -66.95 -0.19 1.68 16 5 H 0.07 0.87 6.69 -51.93 -0.35 0.52 16 6 C -0.13 -1.20 6.48 -24.90 -0.16 -1.36 16 7 C -0.13 -1.19 7.08 -24.59 -0.17 -1.37 16 8 C 0.10 1.23 6.69 -2.53 -0.02 1.21 16 9 N -0.61 -9.18 3.06 -163.01 -0.50 -9.68 16 10 C 0.55 10.15 7.45 -10.98 -0.08 10.07 16 11 O -0.48 -9.38 10.13 5.55 0.06 -9.32 16 12 C -0.11 -2.37 5.16 36.01 0.19 -2.18 16 13 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 14 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 15 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 16 C 0.09 2.77 5.50 -17.43 -0.10 2.68 16 17 N -0.88 -26.99 13.97 55.49 0.78 -26.22 16 18 Si 0.86 21.78 27.74 -169.99 -4.71 17.06 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 22 C 0.05 0.62 2.65 -67.72 -0.18 0.44 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 C -0.13 -1.41 5.53 -25.09 -0.14 -1.54 16 25 C 0.10 0.98 7.78 -3.12 -0.02 0.96 16 26 N -0.73 -8.71 6.25 -59.14 -0.37 -9.08 16 27 C 0.54 7.91 8.02 -10.76 -0.09 7.82 16 28 O -0.53 -9.36 15.12 5.55 0.08 -9.28 16 29 H 0.07 0.98 6.80 -51.93 -0.35 0.63 16 30 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.07 1.06 5.53 -51.93 -0.29 0.77 16 32 H 0.11 1.75 4.93 -51.93 -0.26 1.49 16 33 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.08 0.74 7.80 -51.93 -0.41 0.33 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.91 7.48 -51.93 -0.39 0.52 16 40 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 41 H 0.09 1.74 7.85 -51.92 -0.41 1.33 16 42 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.11 1.55 7.72 -51.93 -0.40 1.14 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.41 4.33 8.96 -40.82 -0.37 3.97 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -34.82 374.10 -9.16 -43.98 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.44 Total: 4.88 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.25 Total: 4.99 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.55 Total: -52.41 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.14 Total: -18.60 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.82 -9.16 -43.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755190833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.688 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds