Wall clock time and date at job start Sat Apr 11 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99816 * 2 1 4 4 C 1.53003 * 109.47147 * 76.73812 * 3 2 1 5 5 H 1.08996 * 109.99839 * 296.09976 * 4 3 2 6 6 C 1.54322 * 109.88457 * 175.00110 * 4 3 2 7 7 C 1.55152 * 102.94401 * 218.39332 * 6 4 3 8 8 C 1.54916 * 101.58391 * 35.50206 * 7 6 4 9 9 N 1.47020 * 109.88046 * 57.19347 * 4 3 2 10 10 C 1.34778 * 125.65079 * 298.39481 * 9 4 3 11 11 O 1.21284 * 120.00167 * 359.97438 * 10 9 4 12 12 C 1.50707 * 120.00125 * 179.97438 * 10 9 4 13 13 S 1.80999 * 109.46896 * 179.97438 * 12 10 9 14 14 C 1.76197 * 99.99925 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00163 * 0.02562 * 14 13 12 16 16 C 1.38795 * 120.00295 * 180.02562 * 14 13 12 17 17 N 1.31637 * 119.99945 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00242 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47286 * 60.00012 * 18 16 14 20 20 H 1.48506 * 109.47263 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46877 * 299.99646 * 18 16 14 22 22 C 1.46898 * 111.00376 * 236.04703 * 2 1 3 23 23 H 1.09002 * 110.43404 * 309.27518 * 22 2 1 24 24 C 1.54625 * 110.48725 * 71.96279 * 22 2 1 25 25 C 1.54487 * 101.76508 * 143.47459 * 24 22 2 26 26 N 1.46761 * 105.47284 * 334.58587 * 25 24 22 27 27 C 1.34423 * 111.30375 * 17.01708 * 26 25 24 28 28 O 1.21281 * 124.94757 * 179.55990 * 27 26 25 29 29 H 1.08998 * 109.47071 * 57.50800 * 1 2 3 30 30 H 1.09001 * 109.46463 * 177.49992 * 1 2 3 31 31 H 1.08994 * 109.47477 * 297.49685 * 1 2 3 32 32 H 1.08996 * 109.47192 * 316.74260 * 3 2 1 33 33 H 1.08994 * 109.47500 * 196.73987 * 3 2 1 34 34 H 1.09011 * 110.71779 * 336.75526 * 6 4 3 35 35 H 1.08993 * 110.71912 * 100.02579 * 6 4 3 36 36 H 1.08998 * 111.00495 * 153.57123 * 7 6 4 37 37 H 1.08997 * 111.00320 * 277.42668 * 7 6 4 38 38 H 1.08999 * 110.36592 * 204.15133 * 8 7 6 39 39 H 1.08999 * 110.45817 * 81.87502 * 8 7 6 40 40 H 1.08997 * 109.47176 * 299.99588 * 12 10 9 41 41 H 1.08994 * 109.46867 * 60.00046 * 12 10 9 42 42 H 0.96997 * 119.99759 * 179.97438 * 17 16 14 43 43 H 1.08996 * 110.97251 * 261.59400 * 24 22 2 44 44 H 1.09003 * 110.96767 * 25.36263 * 24 22 2 45 45 H 1.08991 * 110.24976 * 215.58358 * 25 24 22 46 46 H 1.09003 * 110.31358 * 93.62359 * 25 24 22 47 47 H 0.97002 * 124.35418 * 197.03022 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.8692 1.9662 1.4041 5 1 0.8183 2.0477 1.6813 6 6 2.5325 3.3590 1.4457 7 6 3.2103 3.3796 2.8412 8 6 3.6592 1.9045 2.9907 9 7 2.5774 1.1164 2.3725 10 6 2.2865 -0.1702 2.6487 11 8 1.3700 -0.7212 2.0764 12 6 3.0999 -0.9245 3.6688 13 16 2.4679 -2.6143 3.8147 14 6 3.5691 -3.2486 5.0351 15 1 4.3411 -2.6155 5.4472 16 6 3.4446 -4.5617 5.4670 17 7 2.5034 -5.3332 4.9652 18 14 4.6117 -5.2339 6.7615 19 1 4.4849 -4.4335 8.0058 20 1 4.2704 -6.6506 7.0478 21 1 6.0071 -5.1520 6.2601 22 6 1.9955 -0.7659 -1.1376 23 1 1.5283 -1.7497 -1.1829 24 6 1.7708 0.0045 -2.4592 25 6 3.0551 -0.3387 -3.2462 26 7 4.0666 -0.6486 -2.2290 27 6 3.4992 -0.8983 -1.0362 28 8 4.1045 -1.1880 -0.0260 29 1 -0.3633 0.5520 -0.8668 30 1 -0.3632 -1.0267 -0.0448 31 1 -0.3634 0.4744 0.9115 32 1 1.4269 1.9789 -0.7042 33 1 3.0443 1.3581 -0.2960 34 1 3.2759 3.4559 0.6543 35 1 1.7821 4.1459 1.3697 36 1 4.0684 4.0517 2.8488 37 1 2.4961 3.6514 3.6184 38 1 3.7635 1.6447 4.0442 39 1 4.5990 1.7370 2.4646 40 1 4.1429 -0.9523 3.3534 41 1 3.0255 -0.4245 4.6345 42 1 2.4166 -6.2510 5.2668 43 1 0.8854 -0.3618 -2.9786 44 1 1.6993 1.0771 -2.2781 45 1 3.3710 0.5161 -3.8441 46 1 2.8865 -1.2045 -3.8866 47 1 5.0219 -0.6703 -2.3958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755190834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:41 Heat of formation + Delta-G solvation = -24.739140 kcal Electronic energy + Delta-G solvation = -29581.436866 eV Core-core repulsion = 25698.895703 eV Total energy + Delta-G solvation = -3882.541163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.69104 -39.46865 -36.86446 -36.54498 -35.63123 -32.25181 -31.51986 -30.82745 -29.62676 -28.30770 -27.46288 -26.02581 -25.29940 -23.66168 -22.49182 -21.52139 -20.97013 -19.61852 -18.53358 -17.46373 -17.27080 -16.65640 -16.50053 -16.04348 -15.46120 -14.72424 -14.64814 -14.51332 -14.16166 -14.01207 -13.96803 -13.66296 -13.44284 -13.29123 -12.92408 -12.86448 -12.68360 -12.55628 -12.27922 -12.14788 -12.02449 -11.61236 -11.46359 -11.28059 -11.19862 -11.06332 -10.91227 -10.84508 -10.83111 -10.71662 -10.61289 -9.61791 -9.57323 -9.10326 -8.88675 -8.74219 -8.26924 -7.96698 -7.48371 -6.22886 -6.04252 -3.69551 2.79390 3.24434 3.31456 3.34296 3.37363 3.42967 3.72679 3.88535 4.00892 4.36782 4.39392 4.44129 4.53054 4.62873 4.78965 4.81261 4.89590 5.10517 5.22844 5.29403 5.30252 5.34188 5.38120 5.42636 5.50325 5.55055 5.57387 5.62518 5.69247 5.74441 5.78861 5.82240 5.90072 5.95014 6.07225 6.19499 6.30428 6.33422 6.51401 6.77756 6.87303 7.03958 7.24386 7.32026 7.76287 8.22830 8.46603 8.52719 9.23145 9.41057 11.03190 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.003928 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.125494 B = 7126.261621 C = 8263.006460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.474 5.474 3 C 0.044 3.956 4 C 0.148 3.852 5 H 0.069 0.931 6 C -0.127 4.127 7 C -0.131 4.131 8 C 0.102 3.898 9 N -0.617 5.617 10 C 0.553 3.447 11 O -0.468 6.468 12 C -0.139 4.139 13 S -0.056 6.056 14 C -0.530 4.530 15 H 0.068 0.932 16 C 0.073 3.927 17 N -0.870 5.870 18 Si 0.914 3.086 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.275 1.275 22 C 0.055 3.945 23 H 0.117 0.883 24 C -0.174 4.174 25 C 0.109 3.891 26 N -0.745 5.745 27 C 0.519 3.481 28 O -0.487 6.487 29 H 0.009 0.991 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.266 0.734 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 19.694 -16.663 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.196 5.196 3 C -0.085 4.085 4 C 0.043 3.957 5 H 0.087 0.913 6 C -0.165 4.165 7 C -0.169 4.169 8 C -0.022 4.022 9 N -0.356 5.356 10 C 0.340 3.660 11 O -0.337 6.337 12 C -0.290 4.290 13 S 0.171 5.829 14 C -0.679 4.679 15 H 0.086 0.914 16 C -0.136 4.136 17 N -0.506 5.506 18 Si 0.741 3.259 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.201 1.201 22 C -0.058 4.058 23 H 0.135 0.865 24 C -0.214 4.214 25 C -0.017 4.017 26 N -0.404 5.404 27 C 0.303 3.697 28 O -0.358 6.358 29 H 0.027 0.973 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.986 18.148 -16.431 24.562 hybrid contribution 2.174 0.593 0.456 2.299 sum 0.188 18.742 -15.975 24.627 Atomic orbital electron populations 1.22182 0.86028 1.02096 0.99268 1.62234 1.08384 1.11366 1.37595 1.22687 0.99752 0.89718 0.96340 1.21403 0.96718 0.88911 0.88675 0.91268 1.22645 1.00127 0.95799 0.97948 1.22750 1.00770 0.96371 0.97030 1.22176 0.91140 0.90116 0.98719 1.48362 1.33849 1.11351 1.42042 1.19539 0.84782 0.79084 0.82557 1.90671 1.29545 1.65593 1.47878 1.23439 1.02796 1.03655 0.99134 1.85178 1.43822 1.00199 1.53680 1.22874 1.19177 0.99936 1.25874 0.91360 1.24939 0.95930 0.95803 0.96884 1.70023 1.31419 1.07435 1.41770 0.86297 0.80711 0.77805 0.81105 1.20062 1.20930 1.20060 1.22526 0.94141 1.00256 0.88846 0.86529 1.23390 0.98043 1.02127 0.97859 1.21887 0.88254 1.00607 0.90913 1.46232 1.09401 1.73698 1.11110 1.20694 0.90215 0.76131 0.82693 1.90850 1.68859 1.44519 1.31541 0.97295 0.91258 0.91036 0.94385 0.91453 0.90919 0.90420 0.90303 0.90660 0.90827 0.92180 0.90071 0.90654 0.92429 0.89397 0.89928 0.90901 0.91316 0.75481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.69 7.75 60.06 0.47 1.16 16 2 N -0.47 -6.98 1.52 -234.90 -0.36 -7.34 16 3 C 0.04 0.54 3.32 -3.82 -0.01 0.53 16 4 C 0.15 1.86 3.07 -66.95 -0.21 1.65 16 5 H 0.07 0.91 7.21 -51.93 -0.37 0.53 16 6 C -0.13 -1.13 6.48 -24.90 -0.16 -1.29 16 7 C -0.13 -1.20 7.08 -24.58 -0.17 -1.37 16 8 C 0.10 1.32 6.69 -2.52 -0.02 1.30 16 9 N -0.62 -9.85 3.06 -163.01 -0.50 -10.35 16 10 C 0.55 11.49 7.45 -10.98 -0.08 11.41 16 11 O -0.47 -10.53 11.13 5.55 0.06 -10.46 16 12 C -0.14 -3.25 5.16 36.01 0.19 -3.06 16 13 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 14 C -0.53 -16.18 9.50 30.94 0.29 -15.88 16 15 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 16 C 0.07 2.20 5.49 -17.43 -0.10 2.10 16 17 N -0.87 -27.47 13.22 55.49 0.73 -26.74 16 18 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.06 0.74 3.00 -67.72 -0.20 0.54 16 23 H 0.12 1.68 8.03 -51.93 -0.42 1.26 16 24 C -0.17 -1.47 5.91 -25.10 -0.15 -1.61 16 25 C 0.11 0.80 7.78 -3.12 -0.02 0.78 16 26 N -0.75 -8.03 6.24 -59.20 -0.37 -8.40 16 27 C 0.52 8.10 6.53 -10.86 -0.07 8.02 16 28 O -0.49 -10.37 18.02 5.56 0.10 -10.27 16 29 H 0.01 0.09 7.63 -51.93 -0.40 -0.30 16 30 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 31 H 0.07 1.04 6.68 -51.93 -0.35 0.69 16 32 H 0.04 0.38 6.66 -51.93 -0.35 0.03 16 33 H 0.07 0.91 6.66 -51.93 -0.35 0.56 16 34 H 0.07 0.60 7.80 -51.92 -0.41 0.20 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.96 7.48 -51.93 -0.39 0.57 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.92 8.14 -51.92 -0.42 1.50 16 41 H 0.08 1.65 7.85 -51.92 -0.41 1.24 16 42 H 0.27 7.81 8.31 -40.82 -0.34 7.47 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.66 5.78 -51.93 -0.30 0.36 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.41 3.83 8.96 -40.82 -0.37 3.46 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -38.41 379.89 -9.53 -47.94 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.44 Total: 1.86 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.25 Total: 4.28 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.49 Total: -52.83 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.16 Total: -20.74 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.41 -9.53 -47.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755190834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.200 kcal (2) G-P(sol) polarization free energy of solvation -38.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds