Wall clock time and date at job start Sat Apr 11 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00104 * 2 1 4 4 C 1.52995 * 109.47285 * 71.10203 * 3 2 1 5 5 H 1.09003 * 109.99980 * 305.30956 * 4 3 2 6 6 C 1.54317 * 109.77555 * 66.46632 * 4 3 2 7 7 C 1.55160 * 102.86081 * 141.88622 * 6 4 3 8 8 C 1.54905 * 101.58589 * 324.30322 * 7 6 4 9 9 N 1.47025 * 109.88246 * 184.21921 * 4 3 2 10 10 C 1.34776 * 125.65264 * 61.68074 * 9 4 3 11 11 O 1.21283 * 119.99303 * 354.78297 * 10 9 4 12 12 C 1.50696 * 120.00113 * 174.78764 * 10 9 4 13 13 S 1.81004 * 109.46801 * 179.97438 * 12 10 9 14 14 C 1.76204 * 99.99679 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00156 * 0.02562 * 14 13 12 16 16 C 1.38801 * 119.99687 * 180.02562 * 14 13 12 17 17 N 1.31631 * 120.00298 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99872 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47163 * 89.99804 * 18 16 14 20 20 H 1.48501 * 109.47126 * 210.00089 * 18 16 14 21 21 H 1.48506 * 109.47192 * 330.00162 * 18 16 14 22 22 C 1.46896 * 111.00272 * 236.04565 * 2 1 3 23 23 H 1.08999 * 110.43896 * 64.65596 * 22 2 1 24 24 C 1.54637 * 110.48585 * 302.11473 * 22 2 1 25 25 C 1.54476 * 101.76183 * 216.52360 * 24 22 2 26 26 N 1.46756 * 105.47827 * 25.41517 * 25 24 22 27 27 C 1.34652 * 111.33823 * 342.87019 * 26 25 24 28 28 O 1.21287 * 125.07874 * 180.51245 * 27 26 25 29 29 H 1.09006 * 109.46734 * 55.06229 * 1 2 3 30 30 H 1.09000 * 109.46831 * 175.05726 * 1 2 3 31 31 H 1.08996 * 109.47198 * 295.06486 * 1 2 3 32 32 H 1.09000 * 109.47213 * 311.10052 * 3 2 1 33 33 H 1.09001 * 109.47434 * 191.10658 * 3 2 1 34 34 H 1.09000 * 110.91880 * 23.47242 * 6 4 3 35 35 H 1.09000 * 110.74503 * 260.21972 * 6 4 3 36 36 H 1.09007 * 111.00119 * 206.23172 * 7 6 4 37 37 H 1.09001 * 111.00547 * 82.38026 * 7 6 4 38 38 H 1.09000 * 110.36970 * 278.17792 * 8 7 6 39 39 H 1.08992 * 110.36729 * 155.84666 * 8 7 6 40 40 H 1.09003 * 109.47142 * 60.00314 * 12 10 9 41 41 H 1.08992 * 109.47206 * 299.99862 * 12 10 9 42 42 H 0.97001 * 120.00031 * 180.02562 * 17 16 14 43 43 H 1.08998 * 110.96328 * 334.63790 * 24 22 2 44 44 H 1.08995 * 110.96450 * 98.40435 * 24 22 2 45 45 H 1.09007 * 110.24391 * 144.41844 * 25 24 22 46 46 H 1.08997 * 110.24892 * 266.41399 * 25 24 22 47 47 H 0.97007 * 124.35182 * 162.98137 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7421 2.0150 1.3647 5 1 0.6823 1.9570 1.6132 6 6 2.5772 1.2953 2.4445 7 6 3.0279 2.4597 3.3656 8 6 3.2443 3.6011 2.3409 9 7 2.1743 3.4201 1.3429 10 6 1.6716 4.3843 0.5466 11 8 0.8523 4.1036 -0.3024 12 6 2.1277 5.8112 0.7112 13 16 1.2777 6.8591 -0.4953 14 6 1.9785 8.4239 -0.0888 15 1 2.7052 8.4999 0.7066 16 6 1.5966 9.5587 -0.7908 17 7 0.7114 9.4660 -1.7605 18 14 2.3401 11.2175 -0.3604 19 1 3.5678 11.4341 -1.1673 20 1 1.3580 12.2917 -0.6552 21 1 2.6857 11.2454 1.0836 22 6 1.9955 -0.7660 -1.1375 23 1 1.7237 -0.2863 -2.0778 24 6 1.4705 -2.2200 -1.1003 25 6 2.6944 -3.0099 -1.6144 26 7 3.8601 -2.1775 -1.2951 27 6 3.4978 -0.9079 -1.0304 28 8 4.2619 -0.0098 -0.7464 29 1 -0.3633 0.5886 -0.8425 30 1 -0.3633 -1.0239 -0.0885 31 1 -0.3633 0.4353 0.9308 32 1 1.4950 1.9527 -0.7744 33 1 3.0671 1.3493 -0.1980 34 1 3.4400 0.7977 2.0017 35 1 1.9637 0.5827 2.9958 36 1 3.9575 2.2142 3.8791 37 1 2.2457 2.7185 4.0793 38 1 4.2225 3.5072 1.8694 39 1 3.1484 4.5714 2.8280 40 1 3.2039 5.8697 0.5483 41 1 1.8936 6.1535 1.7191 42 1 0.4448 10.2591 -2.2513 43 1 1.2143 -2.5162 -0.0831 44 1 0.6178 -2.3440 -1.7677 45 1 2.7653 -3.9702 -1.1034 46 1 2.6215 -3.1596 -2.6916 47 1 4.7749 -2.4998 -1.2785 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755190835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:43 Heat of formation + Delta-G solvation = -51.226198 kcal Electronic energy + Delta-G solvation = -28180.883928 eV Core-core repulsion = 24297.194200 eV Total energy + Delta-G solvation = -3883.689728 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.88136 -39.78032 -37.34629 -36.82493 -36.16449 -32.39025 -31.76833 -31.14276 -29.76016 -28.43357 -27.95280 -26.22447 -25.44976 -23.77584 -22.22035 -21.97216 -20.90214 -20.14780 -18.78808 -17.69603 -17.56057 -17.24847 -16.68758 -16.17807 -15.50478 -14.90857 -14.86965 -14.76593 -14.59672 -14.32817 -14.13387 -13.98919 -13.72588 -13.58857 -13.14689 -13.06555 -12.95581 -12.70285 -12.49293 -12.45751 -12.02887 -11.84399 -11.72726 -11.65191 -11.36546 -11.17274 -11.03022 -10.97747 -10.73560 -10.71056 -10.67424 -9.77648 -9.76017 -9.45150 -9.28997 -9.02746 -8.55018 -8.29257 -8.17776 -6.45095 -6.17792 -3.87653 2.28344 2.93180 3.01069 3.16138 3.25251 3.29090 3.33270 3.62219 3.90049 3.97567 4.11872 4.24388 4.58269 4.60554 4.62579 4.67549 4.89961 4.99036 5.06575 5.13583 5.17283 5.21905 5.29343 5.34788 5.35525 5.41773 5.52375 5.59009 5.66868 5.74224 5.80317 5.80828 5.84854 5.95483 5.97624 6.04609 6.15973 6.22302 6.33667 6.42344 6.56085 6.67801 6.87924 6.93407 7.63590 7.83312 7.97550 8.39403 8.67499 9.27497 10.89693 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.002503 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.635049 B =11183.586585 C =11666.908523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.519 5.519 3 C 0.016 3.984 4 C 0.151 3.849 5 H 0.069 0.931 6 C -0.112 4.112 7 C -0.136 4.136 8 C 0.101 3.899 9 N -0.621 5.621 10 C 0.549 3.451 11 O -0.517 6.517 12 C -0.146 4.146 13 S -0.062 6.062 14 C -0.533 4.533 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.047 3.953 23 H 0.080 0.920 24 C -0.127 4.127 25 C 0.104 3.896 26 N -0.734 5.734 27 C 0.531 3.469 28 O -0.515 6.515 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.268 0.732 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 -28.347 6.266 29.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.244 5.244 3 C -0.112 4.112 4 C 0.047 3.953 5 H 0.087 0.913 6 C -0.150 4.150 7 C -0.174 4.174 8 C -0.022 4.022 9 N -0.358 5.358 10 C 0.338 3.662 11 O -0.392 6.392 12 C -0.297 4.297 13 S 0.165 5.835 14 C -0.681 4.681 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.504 5.504 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.065 4.065 23 H 0.098 0.902 24 C -0.165 4.165 25 C -0.021 4.021 26 N -0.390 5.390 27 C 0.316 3.684 28 O -0.389 6.389 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.843 -28.283 5.384 28.931 hybrid contribution 1.496 1.609 0.443 2.241 sum 4.339 -26.674 5.826 27.646 Atomic orbital electron populations 1.22513 0.86709 1.01577 1.02081 1.61958 1.08115 1.14804 1.39520 1.23046 1.03975 0.86519 0.97671 1.21335 0.98530 0.80563 0.94917 0.91308 1.22541 1.00149 0.96747 0.95516 1.22812 1.02031 0.95283 0.97282 1.22291 0.91033 0.99541 0.89366 1.48546 1.39062 1.08505 1.39667 1.19995 0.80602 0.85958 0.79669 1.90667 1.33073 1.82490 1.32962 1.23510 1.05020 0.94734 1.06434 1.85350 1.55651 1.00291 1.42213 1.22867 1.29361 0.93134 1.22770 0.90959 1.24991 0.94956 0.99101 0.94573 1.70023 1.29863 1.30014 1.20486 0.86170 0.78801 0.81725 0.78818 1.20281 1.20773 1.19692 1.22282 0.93088 0.95763 0.95399 0.90195 1.22754 0.97453 0.92507 1.03771 1.22051 0.84818 0.94651 1.00625 1.46162 1.10185 1.10779 1.71920 1.20668 0.90689 0.82133 0.74865 1.90681 1.58570 1.42330 1.47346 0.94760 0.91315 0.90799 0.92584 0.87020 0.90243 0.90483 0.90125 0.90797 0.91391 0.90438 0.89382 0.89344 0.92243 0.88631 0.89155 0.90026 0.91006 0.75083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.18 60.06 0.55 0.74 16 2 N -0.52 -5.78 4.35 -234.90 -1.02 -6.81 16 3 C 0.02 0.23 4.22 -3.83 -0.02 0.22 16 4 C 0.15 2.12 2.93 -66.96 -0.20 1.93 16 5 H 0.07 1.00 6.67 -51.93 -0.35 0.66 16 6 C -0.11 -1.23 6.26 -24.90 -0.16 -1.39 16 7 C -0.14 -1.36 7.08 -24.58 -0.17 -1.53 16 8 C 0.10 1.28 6.74 -2.53 -0.02 1.27 16 9 N -0.62 -10.08 3.07 -163.02 -0.50 -10.58 16 10 C 0.55 11.33 7.69 -10.99 -0.08 11.25 16 11 O -0.52 -12.36 14.66 5.55 0.08 -12.28 16 12 C -0.15 -3.19 5.09 36.00 0.18 -3.01 16 13 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 14 C -0.53 -15.59 9.50 30.94 0.29 -15.30 16 15 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 16 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 17 N -0.87 -26.69 13.22 55.49 0.73 -25.96 16 18 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.05 0.45 2.65 -67.72 -0.18 0.27 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 24 C -0.13 -0.67 5.37 -25.10 -0.13 -0.81 16 25 C 0.10 0.43 7.78 -3.13 -0.02 0.41 16 26 N -0.73 -5.24 6.25 -59.15 -0.37 -5.61 16 27 C 0.53 5.96 8.02 -10.75 -0.09 5.87 16 28 O -0.51 -7.92 15.10 5.55 0.08 -7.84 16 29 H 0.03 0.39 8.02 -51.93 -0.42 -0.03 16 30 H 0.07 0.48 6.59 -51.93 -0.34 0.14 16 31 H 0.07 0.75 6.78 -51.93 -0.35 0.39 16 32 H 0.06 1.02 6.41 -51.93 -0.33 0.68 16 33 H 0.11 1.86 4.78 -51.93 -0.25 1.61 16 34 H 0.08 0.96 7.79 -51.93 -0.40 0.56 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.94 7.47 -51.93 -0.39 0.55 16 40 H 0.09 1.81 8.14 -51.91 -0.42 1.39 16 41 H 0.09 1.79 7.95 -51.92 -0.41 1.38 16 42 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 43 H 0.10 0.50 7.79 -51.93 -0.40 0.10 16 44 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 46 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.41 2.34 8.96 -40.82 -0.37 1.98 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -37.19 384.71 -9.93 -47.12 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.36 Total: 1.30 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.14 Total: 1.94 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -1.16 Total: -48.95 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.17 Total: -20.12 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.19 -9.93 -47.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755190835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.103 kcal (2) G-P(sol) polarization free energy of solvation -37.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds