Wall clock time and date at job start Sat Apr 11 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47017 * 2 1 4 4 C 1.53001 * 109.47291 * 240.00232 * 2 1 3 5 5 N 1.46499 * 109.47409 * 120.00086 * 2 1 3 6 6 C 1.35308 * 125.86944 * 74.99592 * 5 2 1 7 7 C 1.35347 * 106.17713 * 180.02562 * 6 5 2 8 8 C 1.50700 * 126.75515 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.46939 * 94.99857 * 8 7 6 10 10 C 1.46900 * 110.99798 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47113 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.47198 * 180.02562 * 11 10 9 13 13 C 1.34783 * 120.00017 * 180.02562 * 12 11 10 14 14 O 1.21276 * 119.99899 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99977 * 180.02562 * 13 12 11 16 16 S 1.80996 * 109.47318 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00310 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99697 * 359.97438 * 17 16 15 19 19 C 1.38791 * 119.99946 * 179.97438 * 17 16 15 20 20 N 1.31637 * 120.00345 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99997 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47111 * 59.99781 * 21 19 17 23 23 H 1.48498 * 109.47292 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47268 * 300.00088 * 21 19 17 25 25 N 1.33774 * 106.49812 * 0.02562 * 7 6 5 26 26 N 1.28637 * 108.88333 * 0.02562 * 25 7 6 27 27 H 1.09007 * 109.47087 * 299.99880 * 1 2 3 28 28 H 1.08997 * 109.47186 * 59.99928 * 1 2 3 29 29 H 1.08995 * 109.46937 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47007 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47201 * 300.00062 * 3 2 1 32 32 H 1.09004 * 109.47317 * 59.99668 * 3 2 1 33 33 H 1.09004 * 109.47015 * 299.99746 * 4 2 1 34 34 H 1.08997 * 109.47137 * 59.99809 * 4 2 1 35 35 H 1.08994 * 109.47145 * 180.02562 * 4 2 1 36 36 H 1.07997 * 126.91159 * 0.02959 * 6 5 2 37 37 H 1.09000 * 109.47363 * 214.99779 * 8 7 6 38 38 H 1.09004 * 109.47108 * 335.00124 * 8 7 6 39 39 H 1.00896 * 111.00288 * 56.05107 * 9 8 7 40 40 H 1.08998 * 109.47303 * 299.99909 * 10 9 8 41 41 H 1.09001 * 109.47373 * 59.99946 * 10 9 8 42 42 H 1.09002 * 109.46808 * 299.99517 * 11 10 9 43 43 H 1.09001 * 109.47194 * 59.99653 * 11 10 9 44 44 H 0.97000 * 119.99938 * 359.97438 * 12 11 10 45 45 H 1.09007 * 109.46553 * 299.99462 * 15 13 12 46 46 H 1.09001 * 109.47550 * 59.99271 * 15 13 12 47 47 H 0.96998 * 120.00251 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0151 -2.0289 1.3958 7 6 2.5507 -2.2284 2.6227 8 6 2.7664 -3.5531 3.3080 9 7 4.1400 -4.0130 3.0634 10 6 4.3868 -5.3050 3.7175 11 6 5.8244 -5.7500 3.4413 12 7 6.0704 -7.0387 4.0930 13 6 7.2777 -7.6284 3.9862 14 8 8.1602 -7.0922 3.3502 15 6 7.5306 -8.9543 4.6562 16 16 9.2313 -9.4807 4.3296 17 6 9.2514 -11.0104 5.2040 18 1 8.3672 -11.3459 5.7254 19 6 10.4036 -11.7840 5.2225 20 7 11.4815 -11.3747 4.5873 21 14 10.4247 -13.4060 6.1488 22 1 9.3931 -14.3123 5.5835 23 1 11.7634 -14.0347 6.0155 24 1 10.1346 -13.1601 7.5843 25 7 2.8510 -1.0183 3.1075 26 7 2.5226 -0.1284 2.2385 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 1.6571 -2.7856 0.7135 37 1 2.6073 -3.4378 4.3801 38 1 2.0623 -4.2854 2.9129 39 1 4.8114 -3.3218 3.3626 40 1 4.2389 -5.2022 4.7924 41 1 3.6939 -6.0493 3.3249 42 1 5.9728 -5.8527 2.3663 43 1 6.5170 -5.0056 3.8342 44 1 5.3647 -7.4674 4.6021 45 1 7.3815 -8.8525 5.7312 46 1 6.8383 -9.6984 4.2622 47 1 12.2866 -11.9156 4.5999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:13 Heat of formation + Delta-G solvation = 54.255866 kcal Electronic energy + Delta-G solvation = -25539.618450 eV Core-core repulsion = 21692.795519 eV Total energy + Delta-G solvation = -3846.822931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.66704 -39.16295 -38.07798 -36.91420 -34.42404 -32.41021 -32.36007 -31.87800 -30.00317 -28.45550 -28.23337 -27.62796 -25.50766 -24.98149 -24.09497 -22.30781 -21.66721 -20.34397 -20.11482 -17.85466 -17.54163 -16.83085 -16.53976 -16.18511 -15.95894 -15.27828 -15.25974 -14.91909 -14.81433 -14.78069 -14.46910 -14.30073 -13.77119 -13.68441 -13.18973 -13.17514 -13.08691 -13.01038 -12.84497 -12.53581 -12.52222 -12.14759 -12.06308 -12.01017 -11.74588 -11.60890 -11.44456 -11.10423 -11.02513 -11.02054 -10.75253 -10.41761 -9.80602 -9.60495 -9.37734 -9.04320 -8.85669 -8.80801 -8.21369 -6.47633 -6.19339 -3.89990 1.26568 1.85592 2.14813 3.02670 3.13862 3.25080 3.28640 3.31651 3.61763 3.67917 3.91962 3.97937 4.03787 4.22607 4.24980 4.43444 4.58838 4.70809 4.72509 4.78460 4.88268 4.90033 4.92629 4.96695 5.04698 5.08473 5.15604 5.18807 5.21078 5.24698 5.27773 5.38246 5.44913 5.62446 5.64943 5.78656 5.80911 5.92749 5.95052 6.16297 6.26614 6.52611 6.66329 6.97501 7.61185 7.73235 8.20941 8.37058 8.64933 9.25691 10.88028 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036350 B = 0.001323 C = 0.001308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.104690 B =21158.066996 C =21393.590934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.163 3.837 3 C -0.150 4.150 4 C -0.161 4.161 5 N -0.283 5.283 6 C -0.028 4.028 7 C -0.022 4.022 8 C 0.149 3.851 9 N -0.683 5.683 10 C 0.050 3.950 11 C 0.123 3.877 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 N -0.267 5.267 26 N -0.083 5.083 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.187 0.813 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.350 0.650 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.397 0.603 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.897 22.682 -9.984 37.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.081 3.919 3 C -0.208 4.208 4 C -0.219 4.219 5 N -0.077 5.077 6 C -0.180 4.180 7 C -0.160 4.160 8 C 0.018 3.982 9 N -0.315 5.315 10 C -0.079 4.079 11 C -0.002 4.002 12 N -0.394 5.394 13 C 0.318 3.682 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 N -0.134 5.134 26 N -0.062 5.062 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.204 0.796 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.169 0.831 40 H 0.058 0.942 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.231 0.769 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.987 24.641 -11.070 37.484 hybrid contribution -1.660 -2.575 1.843 3.575 sum -27.647 22.066 -9.227 36.557 Atomic orbital electron populations 1.22256 0.91754 1.03672 1.04078 1.21187 0.95391 0.94170 0.81194 1.22012 1.02730 0.92170 1.03866 1.22263 1.02872 1.01219 0.95546 1.47670 1.39935 1.05645 1.14496 1.23248 1.08084 0.86546 1.00086 1.21776 1.04736 0.95202 0.94274 1.20035 0.91187 0.89293 0.97690 1.60348 1.03699 1.05126 1.62341 1.22097 0.96984 0.91905 0.96952 1.21127 0.94785 0.85403 0.98872 1.45892 1.14691 1.22687 1.56136 1.20292 0.81359 0.86352 0.80210 1.90708 1.43422 1.64706 1.40190 1.23528 1.07754 0.96039 1.03052 1.85411 1.03501 1.24961 1.69477 1.22833 1.01325 1.06470 1.37847 0.90976 1.24985 0.94591 0.98453 0.95501 1.70011 1.02091 1.38016 1.40182 0.86227 0.77465 0.81924 0.79893 1.19949 1.20814 1.19953 1.75079 1.18030 0.98118 1.22148 1.78267 1.13871 1.22040 0.91984 0.91294 0.89555 0.91337 0.91103 0.90083 0.90585 0.91074 0.89418 0.90999 0.79581 0.93086 0.89164 0.83146 0.94244 0.90099 0.90701 0.91758 0.76896 0.89221 0.89189 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.44 8.73 37.16 0.32 -0.12 16 2 C 0.16 0.71 1.23 -131.82 -0.16 0.54 16 3 C -0.15 -0.63 8.05 37.16 0.30 -0.33 16 4 C -0.16 -0.46 8.29 37.16 0.31 -0.15 16 5 N -0.28 -2.18 3.18 -48.55 -0.15 -2.33 16 6 C -0.03 -0.20 10.63 -17.05 -0.18 -0.38 16 7 C -0.02 -0.20 6.76 -82.78 -0.56 -0.76 16 8 C 0.15 1.12 6.25 -4.98 -0.03 1.09 16 9 N -0.68 -5.94 6.49 -115.05 -0.75 -6.68 16 10 C 0.05 0.42 5.80 -3.82 -0.02 0.40 16 11 C 0.12 1.46 5.93 -4.04 -0.02 1.43 16 12 N -0.74 -9.84 5.56 -60.29 -0.33 -10.17 16 13 C 0.53 10.07 7.85 -10.98 -0.09 9.99 16 14 O -0.52 -12.02 15.86 5.56 0.09 -11.94 16 15 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 21 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 N -0.27 -3.17 12.41 33.29 0.41 -2.76 16 26 N -0.08 -0.91 12.18 60.35 0.74 -0.17 16 27 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 28 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 0.40 8.03 -51.93 -0.42 -0.02 16 33 H 0.07 0.16 7.39 -51.93 -0.38 -0.22 16 34 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.19 0.77 7.59 -52.49 -0.40 0.37 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.35 3.35 8.72 -39.29 -0.34 3.00 16 40 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 45 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 46 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 47 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 409.45 15.07 6.17 6.17 Total: -1.00 -37.44 409.45 -7.82 -45.26 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.77 Total: -0.15 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 0.28 Total: -4.22 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.65 Total: -47.71 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.44 -7.82 -45.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.519 kcal (2) G-P(sol) polarization free energy of solvation -37.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds