Wall clock time and date at job start Sat Apr 11 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99744 * 2 1 4 4 H 1.48504 * 109.47053 * 270.00126 * 3 2 1 5 5 H 1.48497 * 109.47515 * 30.00140 * 3 2 1 6 6 H 1.48499 * 109.47260 * 150.00180 * 3 2 1 7 7 C 1.38798 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99938 * 359.97438 * 7 2 1 9 9 S 1.76205 * 119.99866 * 179.97438 * 7 2 1 10 10 C 1.81001 * 100.00052 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47300 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00007 * 0.02562 * 11 10 9 13 13 N 1.34768 * 119.99893 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99928 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47318 * 180.02562 * 14 13 11 16 16 N 1.46897 * 109.47108 * 180.02562 * 15 14 13 17 17 C 1.46905 * 110.99989 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47357 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47243 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.46942 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.46942 * 180.02562 * 20 19 18 22 22 N 1.46500 * 109.47084 * 179.97438 * 21 20 19 23 23 C 1.34429 * 126.81895 * 124.99739 * 22 21 20 24 24 N 1.30837 * 108.07952 * 180.02562 * 23 22 21 25 25 C 1.33246 * 109.82318 * 359.97438 * 24 23 22 26 26 N 1.30712 * 108.94935 * 0.27015 * 25 24 23 27 27 H 0.97003 * 120.00553 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46777 * 59.99786 * 10 9 7 29 29 H 1.09003 * 109.46687 * 300.00653 * 10 9 7 30 30 H 0.97003 * 120.00550 * 0.02562 * 13 11 10 31 31 H 1.08994 * 109.47170 * 60.00005 * 14 13 11 32 32 H 1.09000 * 109.46995 * 300.00263 * 14 13 11 33 33 H 1.08994 * 109.47426 * 59.99635 * 15 14 13 34 34 H 1.09000 * 109.46872 * 299.99812 * 15 14 13 35 35 H 1.00893 * 111.00381 * 303.95219 * 16 15 14 36 36 H 1.08993 * 109.47063 * 59.99846 * 17 16 15 37 37 H 1.09004 * 109.46684 * 300.00114 * 17 16 15 38 38 H 1.09002 * 109.47262 * 59.99515 * 18 17 16 39 39 H 1.09009 * 109.46653 * 300.00170 * 18 17 16 40 40 H 1.09007 * 109.46814 * 60.00214 * 19 18 17 41 41 H 1.08996 * 109.46981 * 299.99540 * 19 18 17 42 42 H 1.09002 * 109.47043 * 59.99966 * 20 19 18 43 43 H 1.08996 * 109.47276 * 299.99812 * 20 19 18 44 44 H 1.09002 * 109.47279 * 60.00111 * 21 20 19 45 45 H 1.08995 * 109.47424 * 300.00289 * 21 20 19 46 46 H 1.08000 * 125.96340 * 359.97438 * 23 22 21 47 47 H 1.08002 * 125.52127 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7724 -1.2019 -0.0012 10 6 4.0868 -2.9844 -0.0009 11 6 5.5732 -3.2324 -0.0021 12 8 6.3442 -2.2961 -0.0025 13 7 6.0458 -4.4945 -0.0016 14 6 7.4909 -4.7355 -0.0021 15 6 7.7566 -6.2422 -0.0020 16 7 9.2056 -6.4839 -0.0020 17 6 9.4993 -7.9233 -0.0013 18 6 11.0146 -8.1346 -0.0006 19 6 11.3204 -9.6338 0.0008 20 6 12.8358 -9.8451 0.0009 21 6 13.1416 -11.3442 0.0016 22 7 14.5926 -11.5466 0.0010 23 6 15.3056 -12.2686 0.8827 24 7 16.5660 -12.2008 0.5380 25 6 16.6959 -11.4483 -0.5539 26 7 15.5156 -11.0203 -0.9175 27 1 -0.4851 0.8400 0.0004 28 1 3.6435 -3.4316 -0.8906 29 1 3.6441 -3.4312 0.8893 30 1 5.4293 -5.2433 -0.0009 31 1 7.9342 -4.2880 0.8873 32 1 7.9334 -4.2889 -0.8926 33 1 7.3134 -6.6895 -0.8917 34 1 7.3141 -6.6891 0.8882 35 1 9.6489 -6.0245 -0.7833 36 1 9.0684 -8.3824 -0.8909 37 1 9.0684 -8.3815 0.8890 38 1 11.4451 -7.6755 0.8894 39 1 11.4458 -7.6762 -0.8907 40 1 10.8899 -10.0932 -0.8890 41 1 10.8894 -10.0916 0.8911 42 1 13.2667 -9.3855 0.8904 43 1 13.2665 -9.3872 -0.8896 44 1 12.7108 -11.8034 -0.8881 45 1 12.7108 -11.8025 0.8918 46 1 14.9077 -12.8096 1.7285 47 1 17.6264 -11.2241 -1.0544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:17 Heat of formation + Delta-G solvation = 35.395172 kcal Electronic energy + Delta-G solvation = -24386.337516 eV Core-core repulsion = 20538.696724 eV Total energy + Delta-G solvation = -3847.640792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.56213 -39.34201 -37.83926 -36.51416 -34.79153 -33.49583 -32.44985 -31.73292 -30.97003 -29.65331 -27.67990 -25.69587 -25.46598 -23.08383 -22.56248 -22.48451 -21.64367 -21.51122 -20.48434 -17.91298 -17.83330 -16.93473 -16.61266 -16.42011 -16.10303 -15.86174 -15.54164 -15.25079 -14.99658 -14.84008 -14.66388 -14.46672 -14.29652 -13.80227 -13.63623 -13.33281 -13.20999 -12.80546 -12.79078 -12.51672 -12.40559 -12.10838 -11.78701 -11.70188 -11.55293 -11.45238 -11.27074 -11.14366 -11.01438 -10.61866 -10.53203 -10.33332 -10.21410 -9.86766 -9.56560 -9.04184 -8.98622 -8.92829 -8.51211 -6.93001 -6.30026 -4.01891 1.09123 1.73940 2.45195 2.71414 2.95823 3.19054 3.32630 3.50120 3.54253 3.71613 3.78989 3.92572 4.16153 4.26119 4.32163 4.32573 4.41640 4.56175 4.57674 4.65669 4.73103 4.78761 4.82604 4.92379 4.98542 5.09212 5.14358 5.17930 5.19607 5.28457 5.31596 5.47240 5.66143 5.66902 5.70462 5.72098 5.76555 5.83004 5.89391 5.99362 6.23200 6.42592 6.54642 6.88264 7.54348 7.56885 7.93033 8.40352 8.46696 9.16273 10.79249 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.055341 B = 0.001034 C = 0.001021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.831531 B =27075.596987 C =27424.764435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.123 3.877 15 C 0.050 3.950 16 N -0.688 5.688 17 C 0.060 3.940 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.130 4.130 21 C 0.128 3.872 22 N -0.379 5.379 23 C 0.252 3.748 24 N -0.549 5.549 25 C 0.197 3.803 26 N -0.318 5.318 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.399 0.601 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.344 0.656 36 H 0.031 0.969 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.219 0.781 47 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.847 -28.557 0.500 39.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.392 5.392 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.320 5.320 17 C -0.069 4.069 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.168 4.168 21 C 0.006 3.994 22 N -0.170 5.170 23 C -0.045 4.045 24 N -0.277 5.277 25 C -0.106 4.106 26 N -0.145 5.145 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.233 0.767 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.162 0.838 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.121 0.879 46 H 0.235 0.765 47 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 28.080 -26.510 0.732 38.624 hybrid contribution -1.551 -1.077 -0.798 2.050 sum 26.529 -27.587 -0.066 38.273 Atomic orbital electron populations 1.69936 1.05936 1.27793 1.48084 1.24705 0.94433 0.98960 0.93134 0.86740 0.81928 0.83275 0.79956 1.19198 1.19907 1.15890 1.22321 0.88276 0.97548 1.58816 0.89385 1.84806 1.09266 1.00037 1.97428 1.23275 0.93928 1.04424 1.05821 1.20271 0.90612 0.82189 0.75263 1.90708 1.58785 1.42161 1.47564 1.45857 1.07317 1.08151 1.77899 1.21153 0.81461 0.94581 1.03013 1.22090 0.88797 0.95805 1.01318 1.60304 1.09845 1.11300 1.50520 1.21967 0.96026 0.88164 1.00764 1.21542 0.95395 0.95462 1.03182 1.21474 0.94354 0.96937 1.02616 1.21860 0.97058 0.93815 1.04115 1.21942 0.74017 0.99002 1.04455 1.50638 1.08527 1.37032 1.20790 1.26117 0.87575 0.94878 0.95885 1.70559 1.17662 1.23532 1.15903 1.26054 0.97069 0.94392 0.93080 1.78052 0.99548 1.22426 1.14515 0.91923 0.88510 0.88405 0.76745 0.90619 0.91776 0.94502 0.90251 0.83753 0.95106 0.90819 0.90762 0.91773 0.91493 0.91338 0.91117 0.90242 0.89199 0.87927 0.76513 0.76675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.97 55.49 0.78 -25.76 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.76 27.74 -169.99 -4.71 17.04 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.23 -5.97 6.74 56.52 0.38 -5.58 16 7 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 10 C -0.12 -2.36 6.16 36.00 0.22 -2.14 16 11 C 0.53 9.33 7.85 -10.99 -0.09 9.24 16 12 O -0.52 -11.21 15.86 5.56 0.09 -11.12 16 13 N -0.74 -9.03 5.56 -60.30 -0.33 -9.36 16 14 C 0.12 1.32 5.93 -4.04 -0.02 1.29 16 15 C 0.05 0.37 5.80 -3.83 -0.02 0.35 16 16 N -0.69 -4.84 6.50 -113.78 -0.74 -5.58 16 17 C 0.06 0.31 5.69 -3.82 -0.02 0.29 16 18 C -0.12 -0.51 5.47 -26.73 -0.15 -0.65 16 19 C -0.12 -0.30 5.21 -26.73 -0.14 -0.44 16 20 C -0.13 -0.43 5.42 -26.73 -0.14 -0.58 16 21 C 0.13 0.31 6.55 -4.04 -0.03 0.28 16 22 N -0.38 -2.10 3.69 -62.63 -0.23 -2.33 16 23 C 0.25 1.25 12.63 -90.65 -1.14 0.11 16 24 N -0.55 -4.24 11.19 -15.83 -0.18 -4.41 16 25 C 0.20 1.41 13.03 -91.81 -1.20 0.21 16 26 N -0.32 -2.55 12.56 29.29 0.37 -2.18 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 30 H 0.40 3.65 8.47 -40.82 -0.35 3.30 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.34 2.25 8.73 -39.30 -0.34 1.91 16 36 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 40 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 45 H 0.10 -0.04 8.09 -51.93 -0.42 -0.46 16 46 H 0.22 0.09 8.06 -52.49 -0.42 -0.33 16 47 H 0.22 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 411.73 15.07 6.20 6.20 Total: -1.00 -37.84 411.73 -11.14 -48.99 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.87 Total: -1.91 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.52 Total: -4.00 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.34 Total: -49.63 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.84 -11.14 -48.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.385 kcal (2) G-P(sol) polarization free energy of solvation -37.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds