Wall clock time and date at job start Sat Apr 11 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46885 * 2 1 4 4 C 1.53000 * 109.46996 * 240.00293 * 2 1 3 5 5 O 1.45198 * 109.47311 * 119.99852 * 2 1 3 6 6 C 1.34633 * 116.99945 * 60.00126 * 5 2 1 7 7 O 1.21513 * 120.00145 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00024 * 179.97438 * 6 5 2 9 9 C 1.46501 * 119.99984 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.47400 * 324.99940 * 9 8 6 11 11 C 1.50700 * 109.47239 * 85.00012 * 9 8 6 12 12 H 1.08002 * 119.99770 * 240.00298 * 11 9 8 13 13 C 1.37871 * 120.00083 * 59.99978 * 11 9 8 14 14 N 1.31514 * 120.00147 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00278 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47228 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46793 * 300.00001 * 15 13 11 18 18 H 1.48500 * 109.47000 * 60.00094 * 15 13 11 19 19 C 1.50702 * 109.47165 * 204.99943 * 9 8 6 20 20 O 1.21273 * 120.00075 * 0.02562 * 19 9 8 21 21 N 1.34776 * 119.99765 * 179.97438 * 19 9 8 22 22 C 1.46068 * 119.80993 * 179.97438 * 21 19 9 23 23 C 1.52447 * 111.51636 * 242.91757 * 22 21 19 24 24 C 1.53027 * 110.17478 * 297.33029 * 23 22 21 25 25 N 1.46701 * 109.07040 * 88.67778 * 24 23 22 26 26 C 1.34250 * 120.37124 * 288.70753 * 25 24 23 27 27 O 1.21283 * 120.34698 * 177.13234 * 26 25 24 28 28 C 1.46668 * 119.81613 * 359.72451 * 21 19 9 29 29 H 1.09004 * 109.46663 * 299.99587 * 1 2 3 30 30 H 1.08998 * 109.47313 * 59.99800 * 1 2 3 31 31 H 1.09000 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46930 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46856 * 300.00050 * 3 2 1 34 34 H 1.08999 * 109.47259 * 59.99776 * 3 2 1 35 35 H 1.09000 * 109.46899 * 299.99677 * 4 2 1 36 36 H 1.08998 * 109.47166 * 59.99816 * 4 2 1 37 37 H 1.08996 * 109.47045 * 179.97438 * 4 2 1 38 38 H 0.96994 * 120.00226 * 359.97438 * 8 6 5 39 39 H 0.97005 * 119.99661 * 359.97438 * 14 13 11 40 40 H 1.09005 * 109.07161 * 3.44421 * 22 21 19 41 41 H 1.09003 * 109.07027 * 122.45490 * 22 21 19 42 42 H 1.09005 * 109.35336 * 57.54742 * 23 22 21 43 43 H 1.09001 * 109.35439 * 177.25802 * 23 22 21 44 44 H 1.09000 * 109.54267 * 208.55747 * 24 23 22 45 45 H 1.09004 * 109.53873 * 328.80890 * 24 23 22 46 46 H 0.97000 * 119.81278 * 108.72619 * 25 24 23 47 47 H 1.08992 * 109.60183 * 217.79749 * 28 21 19 48 48 H 1.09002 * 109.59793 * 338.26952 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6844 1.1855 6 6 1.6524 -1.9722 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0682 -2.6656 2.4166 9 6 1.6751 -4.0671 2.5826 10 1 0.6659 -4.2097 2.1960 11 6 2.6326 -4.9505 1.8252 12 1 2.2674 -5.5906 1.0356 13 6 3.9749 -4.9416 2.1400 14 7 4.4196 -4.1625 3.1017 15 14 5.1620 -6.0361 1.2007 16 1 6.5368 -5.8416 1.7271 17 1 4.7635 -7.4569 1.3684 18 1 5.1292 -5.6796 -0.2405 19 6 1.7083 -4.4283 4.0453 20 8 2.0283 -3.5969 4.8681 21 7 1.3813 -5.6751 4.4391 22 6 1.4155 -6.0209 5.8578 23 6 2.4463 -7.1070 6.1439 24 6 2.0743 -8.3952 5.4065 25 7 2.6721 -8.3705 4.0671 26 6 2.1950 -7.5404 3.1260 27 8 2.7223 -7.4829 2.0353 28 6 0.9879 -6.6754 3.4412 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 2.6284 -2.2370 3.0824 39 1 3.8032 -3.5939 3.5893 40 1 1.6659 -5.1311 6.4354 41 1 0.4309 -6.3768 6.1614 42 1 3.4279 -6.7703 5.8102 43 1 2.4768 -7.3028 7.2158 44 1 2.4539 -9.2545 5.9594 45 1 0.9899 -8.4658 5.3203 46 1 3.4161 -8.9575 3.8601 47 1 0.1867 -7.2962 3.8419 48 1 0.6469 -6.1739 2.5355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180778317.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:42 Heat of formation + Delta-G solvation = -131.758870 kcal Electronic energy + Delta-G solvation = -33114.007589 eV Core-core repulsion = 28784.072832 eV Total energy + Delta-G solvation = -4329.934758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.26613 -39.76424 -38.37492 -36.66148 -35.94044 -34.21796 -34.07561 -33.46301 -31.59835 -31.37607 -27.80237 -27.18775 -27.11665 -27.00319 -25.30725 -23.59483 -22.11302 -20.96696 -19.90393 -19.28069 -18.70779 -17.74212 -17.58747 -16.74078 -16.33987 -15.94022 -15.62879 -15.50018 -15.23670 -14.49030 -14.06303 -13.96640 -13.88762 -13.76405 -13.49608 -13.41994 -13.15991 -12.90523 -12.88937 -12.52890 -12.20964 -12.00862 -11.88377 -11.73279 -11.52865 -11.46935 -11.36318 -11.14916 -11.01093 -10.92021 -10.82888 -10.79401 -10.44921 -9.89173 -9.79946 -9.45289 -9.25937 -9.24590 -9.02426 -8.52761 -8.35935 -8.00266 -7.67244 -6.33168 -4.15400 2.86198 3.15045 3.47318 3.58216 3.66186 3.75961 3.86509 3.91185 4.02591 4.66786 4.87630 4.98939 5.03757 5.08820 5.11399 5.15615 5.25754 5.27303 5.34658 5.48711 5.56612 5.59458 5.69851 5.81009 5.84678 5.88286 5.93665 6.00997 6.03855 6.09588 6.20249 6.21624 6.25042 6.40888 6.47368 6.64148 6.77541 7.00192 7.21701 7.33134 7.50274 7.72811 7.80638 7.90245 8.45985 8.63721 8.86564 8.93886 8.96960 9.45799 9.57436 11.01457 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.004332 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.430334 B = 6462.027435 C = 7246.854982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.374 6.374 6 C 0.651 3.349 7 O -0.582 6.582 8 N -0.680 5.680 9 C 0.246 3.754 10 H 0.076 0.924 11 C -0.587 4.587 12 H 0.080 0.920 13 C 0.047 3.953 14 N -0.898 5.898 15 Si 1.063 2.937 16 H -0.300 1.300 17 H -0.254 1.254 18 H -0.295 1.295 19 C 0.532 3.468 20 O -0.558 6.558 21 N -0.598 5.598 22 C 0.111 3.889 23 C -0.161 4.161 24 C 0.115 3.885 25 N -0.739 5.739 26 C 0.505 3.495 27 O -0.485 6.485 28 C 0.113 3.887 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.397 0.603 39 H 0.279 0.721 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.393 0.607 47 H 0.078 0.922 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 -2.889 3.165 8.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.290 6.290 6 C 0.404 3.596 7 O -0.473 6.473 8 N -0.339 5.339 9 C 0.143 3.857 10 H 0.093 0.907 11 C -0.626 4.626 12 H 0.098 0.902 13 C -0.162 4.162 14 N -0.535 5.535 15 Si 0.892 3.108 16 H -0.227 1.227 17 H -0.179 1.179 18 H -0.223 1.223 19 C 0.323 3.677 20 O -0.436 6.436 21 N -0.333 5.333 22 C -0.012 4.012 23 C -0.201 4.201 24 C -0.010 4.010 25 N -0.395 5.395 26 C 0.289 3.711 27 O -0.355 6.355 28 C -0.014 4.014 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.233 0.767 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.228 0.772 47 H 0.096 0.904 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.992 -2.901 2.493 7.109 hybrid contribution -0.833 0.437 0.491 1.061 sum -6.825 -2.464 2.984 7.846 Atomic orbital electron populations 1.22495 0.94681 1.05055 1.01504 1.21840 0.93874 0.91232 0.83172 1.21828 1.02157 0.93262 1.02352 1.22491 1.01528 1.03890 0.95956 1.86308 1.72217 1.25027 1.45401 1.17996 0.79177 0.79495 0.82981 1.90769 1.42849 1.70268 1.43447 1.45654 1.53236 1.12563 1.22486 1.18665 0.99039 0.79207 0.88808 0.90665 1.22132 0.93978 1.24502 1.21961 0.90201 1.25801 0.97582 0.96981 0.95832 1.70823 1.39844 1.22998 1.19830 0.83723 0.74071 0.77997 0.74978 1.22712 1.17929 1.22251 1.21734 0.73080 0.80696 0.92230 1.90559 1.48422 1.48978 1.55638 1.47291 1.69269 1.10966 1.05816 1.21203 0.97938 0.99362 0.82743 1.22381 1.01479 0.95759 1.00466 1.21509 0.98387 0.97694 0.83416 1.46062 1.37867 1.43134 1.12429 1.21042 0.85894 0.79588 0.84598 1.90788 1.57674 1.63665 1.23393 1.21891 0.94297 0.90579 0.94665 0.92694 0.91915 0.89163 0.91679 0.90784 0.91860 0.88884 0.92066 0.92402 0.76723 0.90725 0.89004 0.92085 0.90195 0.90276 0.90229 0.91280 0.77181 0.90413 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 8.37 37.16 0.31 -2.51 16 2 C 0.14 2.33 1.13 -90.62 -0.10 2.22 16 3 C -0.14 -1.85 8.85 37.16 0.33 -1.52 16 4 C -0.18 -3.10 8.37 37.16 0.31 -2.79 16 5 O -0.37 -7.97 9.94 -40.31 -0.40 -8.37 16 6 C 0.65 15.51 8.01 54.05 0.43 15.95 16 7 O -0.58 -14.31 11.54 -19.28 -0.22 -14.53 16 8 N -0.68 -16.88 4.32 -61.01 -0.26 -17.14 16 9 C 0.25 5.99 1.75 -70.23 -0.12 5.87 16 10 H 0.08 1.81 6.86 -51.93 -0.36 1.45 16 11 C -0.59 -15.49 4.97 -34.44 -0.17 -15.66 16 12 H 0.08 2.21 6.64 -52.49 -0.35 1.86 16 13 C 0.05 1.30 4.89 -17.82 -0.09 1.21 16 14 N -0.90 -26.34 13.23 55.43 0.73 -25.61 16 15 Si 1.06 26.76 27.86 -169.99 -4.74 22.03 16 16 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 17 H -0.25 -6.11 5.73 56.52 0.32 -5.79 16 18 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 19 C 0.53 12.17 5.75 -10.98 -0.06 12.11 16 20 O -0.56 -13.91 14.00 5.56 0.08 -13.84 16 21 N -0.60 -11.07 2.67 -174.95 -0.47 -11.53 16 22 C 0.11 1.64 5.91 -4.56 -0.03 1.62 16 23 C -0.16 -2.07 5.92 -27.00 -0.16 -2.23 16 24 C 0.12 1.23 6.42 -3.92 -0.03 1.20 16 25 N -0.74 -10.72 5.30 -59.86 -0.32 -11.04 16 26 C 0.50 9.27 6.89 -10.68 -0.07 9.19 16 27 O -0.48 -10.85 10.55 5.55 0.06 -10.79 16 28 C 0.11 1.88 4.98 -4.56 -0.02 1.86 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.66 5.88 -51.93 -0.31 1.35 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.88 5.88 -51.93 -0.31 1.58 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.40 10.18 6.64 -40.82 -0.27 9.91 16 39 H 0.28 8.12 3.70 -40.82 -0.15 7.97 16 40 H 0.09 1.55 6.85 -51.93 -0.36 1.20 16 41 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 42 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.63 6.71 -51.93 -0.35 0.29 16 46 H 0.39 5.41 8.93 -40.82 -0.36 5.05 16 47 H 0.08 0.96 7.17 -51.93 -0.37 0.59 16 48 H 0.12 2.22 5.58 -51.93 -0.29 1.93 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -34.55 361.81 -6.54 -41.09 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -6.98 Total: 17.76 kcal Atomic # 6 Polarization: 25.99 SS G_CDS: 0.53 Total: 26.52 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -0.31 Total: -65.32 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.49 Total: -47.52 kcal Atomic # 14 Polarization: 26.76 SS G_CDS: -4.74 Total: 22.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.55 -6.54 -41.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180778317.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.670 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds