Wall clock time and date at job start Sat Apr 11 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46885 * 2 1 4 4 C 1.53000 * 109.46996 * 240.00293 * 2 1 3 5 5 O 1.45198 * 109.47311 * 119.99852 * 2 1 3 6 6 C 1.34633 * 116.99945 * 60.00126 * 5 2 1 7 7 O 1.21513 * 120.00145 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00024 * 179.97438 * 6 5 2 9 9 C 1.46501 * 119.99984 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.47400 * 324.99940 * 9 8 6 11 11 C 1.50700 * 109.47239 * 85.00012 * 9 8 6 12 12 H 1.08002 * 119.99770 * 240.00298 * 11 9 8 13 13 C 1.37871 * 120.00083 * 59.99978 * 11 9 8 14 14 N 1.31514 * 120.00147 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00278 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47228 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46793 * 300.00001 * 15 13 11 18 18 H 1.48500 * 109.47000 * 60.00094 * 15 13 11 19 19 C 1.50702 * 109.47165 * 204.99943 * 9 8 6 20 20 O 1.21273 * 120.00075 * 0.02562 * 19 9 8 21 21 N 1.34776 * 119.99765 * 179.97438 * 19 9 8 22 22 C 1.46068 * 119.80993 * 179.97438 * 21 19 9 23 23 C 1.52447 * 111.51636 * 242.91757 * 22 21 19 24 24 C 1.53027 * 110.17478 * 297.33029 * 23 22 21 25 25 N 1.46701 * 109.07040 * 88.67778 * 24 23 22 26 26 C 1.34250 * 120.37124 * 288.70753 * 25 24 23 27 27 O 1.21283 * 120.34698 * 177.13234 * 26 25 24 28 28 C 1.46668 * 119.81613 * 359.72451 * 21 19 9 29 29 H 1.09004 * 109.46663 * 299.99587 * 1 2 3 30 30 H 1.08998 * 109.47313 * 59.99800 * 1 2 3 31 31 H 1.09000 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46930 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46856 * 300.00050 * 3 2 1 34 34 H 1.08999 * 109.47259 * 59.99776 * 3 2 1 35 35 H 1.09000 * 109.46899 * 299.99677 * 4 2 1 36 36 H 1.08998 * 109.47166 * 59.99816 * 4 2 1 37 37 H 1.08996 * 109.47045 * 179.97438 * 4 2 1 38 38 H 0.96994 * 120.00226 * 359.97438 * 8 6 5 39 39 H 0.97005 * 119.99661 * 359.97438 * 14 13 11 40 40 H 1.09005 * 109.07161 * 3.44421 * 22 21 19 41 41 H 1.09003 * 109.07027 * 122.45490 * 22 21 19 42 42 H 1.09005 * 109.35336 * 57.54742 * 23 22 21 43 43 H 1.09001 * 109.35439 * 177.25802 * 23 22 21 44 44 H 1.09000 * 109.54267 * 208.55747 * 24 23 22 45 45 H 1.09004 * 109.53873 * 328.80890 * 24 23 22 46 46 H 0.97000 * 119.81278 * 108.72619 * 25 24 23 47 47 H 1.08992 * 109.60183 * 217.79749 * 28 21 19 48 48 H 1.09002 * 109.59793 * 338.26952 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6844 1.1855 6 6 1.6524 -1.9722 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0682 -2.6656 2.4166 9 6 1.6751 -4.0671 2.5826 10 1 0.6659 -4.2097 2.1960 11 6 2.6326 -4.9505 1.8252 12 1 2.2674 -5.5906 1.0356 13 6 3.9749 -4.9416 2.1400 14 7 4.4196 -4.1625 3.1017 15 14 5.1620 -6.0361 1.2007 16 1 6.5368 -5.8416 1.7271 17 1 4.7635 -7.4569 1.3684 18 1 5.1292 -5.6796 -0.2405 19 6 1.7083 -4.4283 4.0453 20 8 2.0283 -3.5969 4.8681 21 7 1.3813 -5.6751 4.4391 22 6 1.4155 -6.0209 5.8578 23 6 2.4463 -7.1070 6.1439 24 6 2.0743 -8.3952 5.4065 25 7 2.6721 -8.3705 4.0671 26 6 2.1950 -7.5404 3.1260 27 8 2.7223 -7.4829 2.0353 28 6 0.9879 -6.6754 3.4412 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 2.6284 -2.2370 3.0824 39 1 3.8032 -3.5939 3.5893 40 1 1.6659 -5.1311 6.4354 41 1 0.4309 -6.3768 6.1614 42 1 3.4279 -6.7703 5.8102 43 1 2.4768 -7.3028 7.2158 44 1 2.4539 -9.2545 5.9594 45 1 0.9899 -8.4658 5.3203 46 1 3.4161 -8.9575 3.8601 47 1 0.1867 -7.2962 3.8419 48 1 0.6469 -6.1739 2.5355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180778317.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:41 Heat of formation + Delta-G solvation = -159.490256 kcal Electronic energy + Delta-G solvation = -33115.210113 eV Core-core repulsion = 28784.072832 eV Total energy + Delta-G solvation = -4331.137281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90992 -41.35602 -39.93403 -38.28804 -37.40432 -36.08545 -35.55478 -34.98834 -33.59343 -32.65146 -29.62567 -28.55723 -28.33453 -28.27131 -26.65014 -25.51534 -23.55177 -22.44673 -21.22256 -20.99432 -20.25594 -19.56138 -19.38353 -18.04693 -17.83048 -17.52492 -17.20130 -17.03305 -16.90209 -16.10670 -15.76511 -15.57295 -15.46716 -15.27534 -14.95403 -14.73550 -14.60937 -14.42075 -14.27108 -14.18909 -13.62979 -13.29338 -13.15101 -13.08675 -12.97727 -12.83605 -12.82062 -12.78206 -12.53252 -12.44735 -12.21537 -12.18962 -12.04010 -11.74452 -11.38790 -11.27168 -11.13376 -10.92525 -10.74288 -10.40054 -9.78159 -9.65883 -9.49878 -8.50481 -6.30137 1.24594 1.45527 1.54353 1.68259 1.82237 1.89629 2.03706 2.45225 2.62757 2.68991 3.15372 3.50248 3.81120 3.81332 3.83962 3.86194 3.98732 4.03535 4.09471 4.18481 4.39544 4.45778 4.55040 4.59252 4.61698 4.62901 4.76386 4.78596 4.84154 4.85748 4.89097 4.95706 4.97350 5.09167 5.32523 5.33305 5.35266 5.49283 5.60417 5.68851 5.77535 6.13993 6.25628 6.35101 6.52473 6.66871 6.70566 7.21614 7.43882 7.59633 7.62366 8.85340 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.004332 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.430334 B = 6462.027435 C = 7246.854982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.117 3.883 3 C -0.132 4.132 4 C -0.178 4.178 5 O -0.383 6.383 6 C 0.648 3.352 7 O -0.595 6.595 8 N -0.688 5.688 9 C 0.244 3.756 10 H 0.071 0.929 11 C -0.569 4.569 12 H 0.062 0.938 13 C 0.017 3.983 14 N -0.930 5.930 15 Si 1.092 2.908 16 H -0.309 1.309 17 H -0.237 1.237 18 H -0.301 1.301 19 C 0.528 3.472 20 O -0.586 6.586 21 N -0.591 5.591 22 C 0.101 3.899 23 C -0.154 4.154 24 C 0.113 3.887 25 N -0.731 5.731 26 C 0.496 3.504 27 O -0.537 6.537 28 C 0.109 3.891 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.391 0.609 39 H 0.273 0.727 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.031 0.969 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.098 0.902 46 H 0.397 0.603 47 H 0.135 0.865 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.996 -3.644 4.021 10.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.081 3.919 3 C -0.189 4.189 4 C -0.235 4.235 5 O -0.298 6.298 6 C 0.401 3.599 7 O -0.487 6.487 8 N -0.346 5.346 9 C 0.140 3.860 10 H 0.089 0.911 11 C -0.608 4.608 12 H 0.080 0.920 13 C -0.187 4.187 14 N -0.569 5.569 15 Si 0.919 3.081 16 H -0.236 1.236 17 H -0.162 1.162 18 H -0.228 1.228 19 C 0.318 3.682 20 O -0.467 6.467 21 N -0.324 5.324 22 C -0.020 4.020 23 C -0.193 4.193 24 C -0.011 4.011 25 N -0.385 5.385 26 C 0.281 3.719 27 O -0.412 6.412 28 C -0.017 4.017 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.226 0.774 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.050 0.950 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.116 0.884 46 H 0.232 0.768 47 H 0.152 0.848 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.550 -3.709 3.387 9.068 hybrid contribution -0.469 0.680 0.207 0.852 sum -8.019 -3.029 3.594 9.295 Atomic orbital electron populations 1.22426 0.93521 1.03541 1.03590 1.22468 0.95109 0.92792 0.81522 1.21866 1.01989 0.90499 1.04499 1.22444 1.00931 1.02234 0.97863 1.86315 1.72322 1.23582 1.47619 1.18076 0.78950 0.80371 0.82457 1.90765 1.43312 1.70941 1.43641 1.45562 1.53487 1.12810 1.22748 1.18647 0.98166 0.78821 0.90325 0.91073 1.22015 0.94013 1.23692 1.21032 0.91978 1.26432 0.98919 0.97347 0.95960 1.70873 1.39941 1.24640 1.21426 0.83366 0.72563 0.78326 0.73839 1.23639 1.16168 1.22802 1.21319 0.73553 0.82277 0.91079 1.90531 1.50006 1.50332 1.55826 1.47333 1.67553 1.09665 1.07893 1.21592 1.01269 0.99300 0.79838 1.22351 0.98005 0.95865 1.03102 1.21870 1.00152 0.97853 0.81188 1.46103 1.37431 1.41665 1.13282 1.21347 0.86107 0.79899 0.84519 1.90737 1.59234 1.65594 1.25629 1.22001 0.95340 0.90388 0.93937 0.92063 0.88335 0.92386 0.92033 0.87114 0.91181 0.92611 0.88194 0.93260 0.77405 0.91321 0.91561 0.87223 0.94997 0.86395 0.86209 0.88363 0.76792 0.84779 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.23 8.37 71.98 0.60 -4.63 16 2 C 0.12 3.90 1.13 -10.79 -0.01 3.89 16 3 C -0.13 -3.18 8.85 71.98 0.64 -2.54 16 4 C -0.18 -5.99 8.37 71.98 0.60 -5.39 16 5 O -0.38 -16.65 9.94 -55.43 -0.55 -17.21 16 6 C 0.65 32.08 8.01 129.79 1.04 33.12 16 7 O -0.59 -30.40 11.54 19.80 0.23 -30.17 16 8 N -0.69 -35.65 4.32 -577.35 -2.49 -38.14 16 9 C 0.24 12.36 1.75 43.50 0.08 12.44 16 10 H 0.07 3.58 6.86 -2.38 -0.02 3.56 16 11 C -0.57 -31.11 4.97 25.60 0.13 -30.98 16 12 H 0.06 3.59 6.64 -2.91 -0.02 3.57 16 13 C 0.02 0.99 4.89 84.65 0.41 1.40 16 14 N -0.93 -56.46 13.23 21.45 0.28 -56.17 16 15 Si 1.09 55.84 27.86 68.60 1.91 57.75 16 16 H -0.31 -16.03 7.11 99.48 0.71 -15.32 16 17 H -0.24 -11.44 5.73 99.48 0.57 -10.87 16 18 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 19 C 0.53 24.74 5.75 87.66 0.50 25.24 16 20 O -0.59 -30.20 14.00 -3.01 -0.04 -30.24 16 21 N -0.59 -21.39 2.67 -825.83 -2.21 -23.59 16 22 C 0.10 2.77 5.91 86.28 0.51 3.28 16 23 C -0.15 -3.48 5.92 30.42 0.18 -3.30 16 24 C 0.11 1.89 6.42 86.35 0.55 2.44 16 25 N -0.73 -19.50 5.30 -462.00 -2.45 -21.94 16 26 C 0.50 17.78 6.89 88.09 0.61 18.39 16 27 O -0.54 -24.30 10.55 -3.04 -0.03 -24.33 16 28 C 0.11 3.50 4.98 85.95 0.43 3.93 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.06 2.14 5.88 -2.39 -0.01 2.13 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.05 2.31 5.88 -2.39 -0.01 2.30 16 36 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.39 21.10 6.64 -92.71 -0.62 20.48 16 39 H 0.27 16.59 3.70 -92.70 -0.34 16.25 16 40 H 0.07 2.19 6.85 -2.38 -0.02 2.17 16 41 H 0.11 1.98 8.08 -2.39 -0.02 1.96 16 42 H 0.03 1.05 8.04 -2.38 -0.02 1.03 16 43 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.10 1.17 6.71 -2.39 -0.02 1.15 16 46 H 0.40 10.16 8.93 -92.71 -0.83 9.33 16 47 H 0.13 2.74 7.17 -2.39 -0.02 2.73 16 48 H 0.10 3.59 5.58 -2.39 -0.01 3.57 16 Total: -1.00 -82.23 361.81 0.78 -81.45 By element: Atomic # 1 Polarization: 45.45 SS G_CDS: -0.14 Total: 45.31 kcal Atomic # 6 Polarization: 51.03 SS G_CDS: 6.27 Total: 57.30 kcal Atomic # 7 Polarization: -132.99 SS G_CDS: -6.86 Total: -139.85 kcal Atomic # 8 Polarization: -101.56 SS G_CDS: -0.40 Total: -101.96 kcal Atomic # 14 Polarization: 55.84 SS G_CDS: 1.91 Total: 57.75 kcal Total: -82.23 0.78 -81.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180778317.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.044 kcal (2) G-P(sol) polarization free energy of solvation -82.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds