Wall clock time and date at job start Sat Apr 11 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99764 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99932 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99906 * 3 2 1 7 7 C 1.38942 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 H 1.09004 * 110.88582 * 31.12249 * 14 13 12 16 16 C 1.55149 * 111.00380 * 267.19793 * 14 13 12 17 17 C 1.54323 * 102.93895 * 206.42695 * 16 14 13 18 18 N 1.47015 * 107.27405 * 22.18946 * 17 16 14 19 19 C 1.34783 * 125.65235 * 181.09691 * 18 17 16 20 20 O 1.21269 * 120.00273 * 179.97438 * 19 18 17 21 21 C 1.50702 * 119.99482 * 359.95989 * 19 18 17 22 22 O 1.42902 * 109.47216 * 179.97438 * 21 19 18 23 23 C 1.42893 * 114.00509 * 180.02562 * 22 21 19 24 24 H 1.08994 * 110.75104 * 29.29522 * 23 22 21 25 25 C 1.55305 * 110.85077 * 152.77364 * 23 22 21 26 26 C 1.55198 * 100.82737 * 152.17887 * 25 23 22 27 27 O 1.43647 * 105.26091 * 323.81622 * 26 25 23 28 28 C 1.43231 * 109.97204 * 24.28443 * 27 26 25 29 29 C 1.47427 * 108.70483 * 1.06217 * 18 17 16 30 30 H 0.97005 * 120.00014 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 33 33 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 34 34 H 1.00902 * 110.99470 * 303.94971 * 13 12 10 35 35 H 1.09001 * 110.71960 * 324.78216 * 16 14 13 36 36 H 1.08994 * 110.72494 * 88.06047 * 16 14 13 37 37 H 1.09003 * 109.88013 * 262.77215 * 17 16 14 38 38 H 1.09001 * 109.88365 * 141.61082 * 17 16 14 39 39 H 1.09007 * 109.47263 * 299.99624 * 21 19 18 40 40 H 1.08996 * 109.47344 * 59.99772 * 21 19 18 41 41 H 1.09001 * 111.12024 * 270.23989 * 25 23 22 42 42 H 1.08996 * 111.12517 * 34.40261 * 25 23 22 43 43 H 1.08994 * 110.37272 * 204.79818 * 26 25 23 44 44 H 1.09005 * 110.13206 * 82.70440 * 26 25 23 45 45 H 1.09002 * 109.83020 * 238.77954 * 28 27 26 46 46 H 1.08999 * 109.82975 * 117.80807 * 28 27 26 47 47 H 1.09003 * 110.36501 * 217.03537 * 29 18 17 48 48 H 1.08995 * 110.36880 * 94.70636 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3706 0.0058 13 7 6.0503 -3.7556 0.0099 14 6 7.5188 -3.7948 0.0160 15 1 7.9284 -2.9329 0.5428 16 6 8.0788 -3.8825 -1.4283 17 6 9.4411 -4.5796 -1.2289 18 7 9.3760 -5.3087 0.0461 19 6 10.3758 -6.0304 0.5902 20 8 10.2097 -6.5923 1.6520 21 6 11.6999 -6.1394 -0.1210 22 8 12.5893 -6.9502 0.6496 23 6 13.8805 -7.1178 0.0610 24 1 14.1438 -6.2515 -0.5458 25 6 14.9558 -7.3762 1.1514 26 6 15.9909 -8.2086 0.3487 27 8 15.2119 -9.0250 -0.5402 28 6 13.9385 -8.4133 -0.7767 29 6 8.0363 -5.1189 0.6313 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3633 0.0004 32 1 5.9281 -1.8579 -0.8832 33 1 5.9200 -1.8555 0.8967 34 1 5.6713 -4.2708 0.7902 35 1 7.4258 -4.4855 -2.0591 36 1 8.2132 -2.8869 -1.8510 37 1 10.2363 -3.8350 -1.1900 38 1 9.6236 -5.2774 -2.0461 39 1 11.5500 -6.5938 -1.1004 40 1 12.1294 -5.1452 -0.2437 41 1 15.3889 -6.4407 1.5055 42 1 14.5450 -7.9548 1.9788 43 1 16.5775 -8.8347 1.0209 44 1 16.6442 -7.5471 -0.2201 45 1 13.1407 -9.0890 -0.4683 46 1 13.8340 -8.1744 -1.8350 47 1 8.1049 -5.0320 1.7157 48 1 7.3817 -5.9460 0.3567 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182513309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:01 Heat of formation + Delta-G solvation = -138.279152 kcal Electronic energy + Delta-G solvation = -28796.930144 eV Core-core repulsion = 24466.712646 eV Total energy + Delta-G solvation = -4330.217498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.59654 -40.00527 -38.69089 -38.03484 -37.19572 -34.93277 -33.90113 -32.09039 -31.71725 -31.06941 -29.81051 -29.27757 -27.90437 -26.04973 -23.81148 -23.53774 -23.02264 -22.10947 -20.83054 -19.86482 -19.41163 -18.40121 -18.03279 -17.71805 -16.91939 -16.82010 -16.43056 -16.07084 -15.64832 -15.58140 -15.40872 -14.98004 -14.86255 -14.50039 -13.99156 -13.89471 -13.83871 -13.49680 -13.43342 -13.17220 -12.94405 -12.80910 -12.72842 -12.62253 -12.22829 -12.20902 -12.04859 -11.93076 -11.71999 -11.38941 -11.35220 -11.20978 -11.00329 -10.63281 -10.27977 -10.14342 -10.06033 -10.01029 -9.61369 -9.01580 -8.66854 -8.32384 -8.21604 -6.34449 -3.86242 2.15281 2.23801 2.98780 3.03364 3.10715 3.12219 3.42499 3.68645 3.80058 3.94888 3.98279 4.06897 4.26584 4.29209 4.34726 4.43565 4.51872 4.57209 4.59628 4.69351 4.73227 4.82924 4.93676 5.04017 5.10821 5.13878 5.17199 5.19572 5.20201 5.32305 5.43550 5.46792 5.52926 5.64346 5.68346 5.71388 5.82379 5.84890 5.99005 6.37856 6.45756 6.95005 7.10260 7.40736 7.53978 7.79623 8.10581 8.55509 8.91232 9.38371 9.77805 10.78582 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.038849 B = 0.001490 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.559564 B =18789.280873 C =18978.939514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.449 3.551 11 O -0.564 6.564 12 C 0.049 3.951 13 N -0.655 5.655 14 C 0.072 3.928 15 H 0.063 0.937 16 C -0.122 4.122 17 C 0.097 3.903 18 N -0.616 5.616 19 C 0.529 3.471 20 O -0.517 6.517 21 C 0.047 3.953 22 O -0.345 6.345 23 C 0.053 3.947 24 H 0.082 0.918 25 C -0.153 4.153 26 C 0.051 3.949 27 O -0.379 6.379 28 C 0.028 3.972 29 C 0.107 3.893 30 H 0.274 0.726 31 H 0.370 0.630 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.356 0.644 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.764 -7.469 -3.182 33.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.138 0.862 9 N -0.229 5.229 10 C 0.234 3.766 11 O -0.446 6.446 12 C -0.084 4.084 13 N -0.289 5.289 14 C -0.039 4.039 15 H 0.080 0.920 16 C -0.161 4.161 17 C -0.026 4.026 18 N -0.353 5.353 19 C 0.317 3.683 20 O -0.392 6.392 21 C -0.033 4.033 22 O -0.263 6.263 23 C -0.005 4.005 24 H 0.100 0.900 25 C -0.191 4.191 26 C -0.025 4.025 27 O -0.298 6.298 28 C -0.049 4.049 29 C -0.016 4.016 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.177 0.823 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 32.074 -8.778 -3.144 33.402 hybrid contribution 0.695 2.199 0.591 2.380 sum 32.769 -6.579 -2.553 33.520 Atomic orbital electron populations 1.69622 1.05656 1.27533 1.49179 1.25038 0.95486 0.97973 0.97593 0.86668 0.79736 0.84054 0.78883 1.19592 1.20171 1.19559 1.19437 0.79212 0.96672 1.48188 0.86245 1.42199 1.07557 1.06132 1.66987 1.19658 0.88090 0.84613 0.84210 1.90578 1.69367 1.30907 1.53712 1.21766 0.95221 0.90008 1.01397 1.60077 1.04081 1.13190 1.51542 1.22690 0.89098 0.96189 0.95914 0.91960 1.22726 0.94245 1.01526 0.97608 1.22189 0.99396 0.95517 0.85509 1.48285 1.13182 1.50709 1.23164 1.19783 0.84290 0.78717 0.85549 1.90763 1.81703 1.44873 1.21818 1.22268 0.89519 0.96495 0.94978 1.88086 1.22119 1.70201 1.45852 1.23779 0.84050 0.97674 0.95021 0.89974 1.23380 0.94905 1.02007 0.98803 1.23406 0.93716 0.93690 0.91695 1.88450 1.27202 1.46961 1.67176 1.23672 0.87098 0.94746 0.99412 1.22382 0.82633 0.97794 0.98796 0.91574 0.79694 0.89349 0.93516 0.82347 0.88868 0.89949 0.91284 0.90959 0.89956 0.89950 0.89018 0.88812 0.89011 0.91792 0.89855 0.90933 0.90160 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 13.96 55.50 0.77 -24.62 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 18.92 27.74 -169.99 -4.71 14.21 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.25 6.52 56.52 0.37 -4.89 16 7 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 9 N -0.59 -13.60 5.09 -10.96 -0.06 -13.66 16 10 C 0.45 9.76 7.82 -10.98 -0.09 9.67 16 11 O -0.56 -14.71 15.78 5.55 0.09 -14.62 16 12 C 0.05 0.74 6.03 -4.97 -0.03 0.71 16 13 N -0.66 -9.09 6.04 -105.72 -0.64 -9.73 16 14 C 0.07 0.74 3.38 -65.57 -0.22 0.51 16 15 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16 16 C -0.12 -0.99 6.65 -24.90 -0.17 -1.16 16 17 C 0.10 0.62 6.49 -3.07 -0.02 0.60 16 18 N -0.62 -5.87 3.33 -170.52 -0.57 -6.43 16 19 C 0.53 5.89 7.93 -10.98 -0.09 5.81 16 20 O -0.52 -8.21 16.75 -14.34 -0.24 -8.45 16 21 C 0.05 0.34 5.47 36.01 0.20 0.54 16 22 O -0.34 -3.25 9.61 -55.14 -0.53 -3.78 16 23 C 0.05 0.34 3.46 -24.78 -0.09 0.25 16 24 H 0.08 0.33 7.85 -51.93 -0.41 -0.08 16 25 C -0.15 -0.87 6.91 -24.35 -0.17 -1.04 16 26 C 0.05 0.28 7.78 38.32 0.30 0.58 16 27 O -0.38 -3.20 11.36 -35.23 -0.40 -3.60 16 28 C 0.03 0.19 7.58 37.88 0.29 0.48 16 29 C 0.11 1.14 6.31 -2.53 -0.02 1.12 16 30 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.37 7.44 5.76 -40.82 -0.24 7.20 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.36 5.24 8.14 -39.29 -0.32 4.92 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.39 8.11 -51.93 -0.42 -0.04 16 41 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 48 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 397.11 15.07 5.98 5.98 Total: -1.00 -36.56 397.11 -8.32 -44.88 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.67 Total: 9.38 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -0.35 Total: 10.45 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.49 Total: -54.44 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.08 Total: -30.45 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.56 -8.32 -44.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182513309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.403 kcal (2) G-P(sol) polarization free energy of solvation -36.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds