Wall clock time and date at job start Sat Apr 11 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00388 * 2 1 4 4 H 1.48498 * 109.47317 * 269.99810 * 3 2 1 5 5 H 1.48506 * 109.47007 * 29.99794 * 3 2 1 6 6 H 1.48503 * 109.47242 * 149.99404 * 3 2 1 7 7 C 1.38950 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00007 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00289 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99669 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46965 * 180.02562 * 12 10 9 14 14 C 1.48530 * 110.99918 * 52.60015 * 13 12 10 15 15 C 1.54940 * 103.22772 * 159.72252 * 14 13 12 16 16 H 1.09000 * 110.72311 * 80.94364 * 15 14 13 17 17 O 1.42898 * 110.87937 * 204.16017 * 15 14 13 18 18 C 1.54604 * 102.91923 * 322.58912 * 15 14 13 19 19 H 1.09001 * 110.30354 * 263.04015 * 18 15 14 20 20 N 1.46496 * 110.39048 * 140.91550 * 18 15 14 21 21 C 1.34781 * 119.99785 * 157.78026 * 20 18 15 22 22 O 1.21279 * 119.99997 * 0.02562 * 21 20 18 23 23 C 1.50694 * 119.99943 * 179.97438 * 21 20 18 24 24 O 1.42903 * 109.47521 * 180.02562 * 23 21 20 25 25 C 1.42891 * 114.00450 * 180.02562 * 24 23 21 26 26 C 1.52997 * 109.47079 * 179.97438 * 25 24 23 27 27 C 1.52997 * 117.50176 * 243.61916 * 26 25 24 28 28 C 1.52998 * 60.00367 * 252.51476 * 27 26 25 29 29 C 1.47899 * 110.99831 * 170.00161 * 13 12 10 30 30 H 0.96999 * 119.99752 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99887 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47133 * 60.00295 * 12 10 9 33 33 H 1.08996 * 109.47320 * 300.00036 * 12 10 9 34 34 H 1.09002 * 110.67228 * 278.15582 * 14 13 12 35 35 H 1.09004 * 110.67104 * 41.28985 * 14 13 12 36 36 H 0.96701 * 113.99703 * 293.58520 * 17 15 14 37 37 H 0.96998 * 120.00002 * 337.77794 * 20 18 15 38 38 H 1.09000 * 109.47656 * 300.00292 * 23 21 20 39 39 H 1.08998 * 109.47436 * 60.00212 * 23 21 20 40 40 H 1.08999 * 109.47563 * 300.00199 * 25 24 23 41 41 H 1.08999 * 109.47478 * 60.00030 * 25 24 23 42 42 H 1.08996 * 115.55257 * 29.33512 * 26 25 24 43 43 H 1.09006 * 117.50158 * 0.02562 * 27 26 25 44 44 H 1.09004 * 117.50263 * 145.01841 * 27 26 25 45 45 H 1.09004 * 117.49365 * 252.51233 * 28 27 26 46 46 H 1.08991 * 117.50064 * 107.49232 * 28 27 26 47 47 H 1.08997 * 109.91760 * 333.50746 * 29 13 12 48 48 H 1.09001 * 109.91722 * 94.60704 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4401 0.7002 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8630 0.0011 13 7 2.1981 -5.9796 0.0016 14 6 3.1842 -5.8364 1.1031 15 6 3.7281 -7.2762 1.2814 16 1 4.4915 -7.4953 0.5349 17 8 4.2440 -7.4660 2.6004 18 6 2.4734 -8.1504 1.0537 19 1 2.0239 -8.4229 2.0086 20 7 2.8209 -9.3540 0.2943 21 6 2.0309 -10.4440 0.3605 22 8 1.0322 -10.4283 1.0484 23 6 2.3880 -11.6819 -0.4212 24 8 1.4044 -12.6923 -0.1889 25 6 1.6504 -13.9144 -0.8871 26 6 0.5412 -14.9179 -0.5653 27 6 0.9390 -16.1986 0.1712 28 6 0.5597 -16.2543 -1.3100 29 6 1.5089 -7.2659 0.2419 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6166 -4.9209 -0.8886 33 1 0.6172 -4.9205 0.8913 34 1 3.9854 -5.1554 0.8162 35 1 2.6951 -5.4943 2.0153 36 1 5.0319 -6.9398 2.7940 37 1 3.6194 -9.3664 -0.2563 38 1 2.4196 -11.4438 -1.4844 39 1 3.3646 -12.0447 -0.1010 40 1 1.6675 -13.7229 -1.9600 41 1 2.6116 -14.3237 -0.5759 42 1 -0.4316 -14.4847 -0.3328 43 1 1.9910 -16.3262 0.4268 44 1 0.2279 -16.6082 0.8887 45 1 -0.4010 -16.7006 -1.5670 46 1 1.3621 -16.4187 -2.0291 47 1 0.5938 -7.0965 0.8093 48 1 1.2731 -7.7441 -0.7088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191295164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:11 Heat of formation + Delta-G solvation = -119.789666 kcal Electronic energy + Delta-G solvation = -29123.311467 eV Core-core repulsion = 24793.895733 eV Total energy + Delta-G solvation = -4329.415734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.37669 -39.27556 -38.49490 -37.78510 -36.70332 -35.78306 -34.51464 -33.84943 -31.36956 -30.62615 -29.11453 -27.92246 -26.81742 -25.91083 -24.19560 -22.82554 -21.71769 -21.33417 -20.96529 -20.43238 -19.30106 -17.99513 -17.75888 -17.42300 -17.22772 -16.69702 -16.21268 -15.99668 -15.64834 -15.23036 -14.89212 -14.76471 -14.62017 -14.49889 -14.16388 -13.85589 -13.78557 -13.22003 -13.10048 -12.92509 -12.77520 -12.48809 -12.39345 -12.10389 -11.98103 -11.71775 -11.57831 -11.53803 -11.34907 -11.03011 -10.90811 -10.73247 -10.64546 -10.41432 -10.26549 -10.18762 -9.96992 -9.86039 -9.53182 -9.31153 -8.46419 -8.08812 -7.97073 -6.46148 -3.87432 2.41424 2.45351 3.14601 3.23895 3.27486 3.29005 3.59647 3.78818 3.84118 4.11097 4.31820 4.34768 4.42633 4.43394 4.57118 4.64920 4.72040 4.79159 4.84775 4.86762 4.98457 5.01681 5.11202 5.17118 5.19442 5.21130 5.34950 5.40531 5.44399 5.65375 5.67621 5.75854 5.78283 5.81315 5.87267 6.08110 6.20024 6.29655 6.46481 6.66738 7.01929 7.13969 7.28119 7.50721 7.55467 8.00484 8.02670 8.55695 9.12550 9.48253 9.99038 10.71311 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027534 B = 0.001663 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.697878 B =16837.390282 C =17463.700019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.104 0.896 9 N -0.559 5.559 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.035 3.965 13 N -0.490 5.490 14 C 0.010 3.990 15 C 0.091 3.909 16 H 0.076 0.924 17 O -0.562 6.562 18 C 0.145 3.855 19 H 0.105 0.895 20 N -0.717 5.717 21 C 0.515 3.485 22 O -0.516 6.516 23 C 0.046 3.954 24 O -0.360 6.360 25 C 0.092 3.908 26 C -0.154 4.154 27 C -0.177 4.177 28 C -0.173 4.173 29 C 0.026 3.974 30 H 0.272 0.728 31 H 0.393 0.607 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.126 0.874 35 H 0.050 0.950 36 H 0.384 0.616 37 H 0.402 0.598 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.056 0.944 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 -26.907 -2.079 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.122 0.878 9 N -0.195 5.195 10 C 0.227 3.773 11 O -0.470 6.470 12 C -0.096 4.096 13 N -0.216 5.216 14 C -0.118 4.118 15 C 0.031 3.969 16 H 0.093 0.907 17 O -0.368 6.368 18 C 0.040 3.960 19 H 0.123 0.877 20 N -0.371 5.371 21 C 0.299 3.701 22 O -0.390 6.390 23 C -0.034 4.034 24 O -0.278 6.278 25 C 0.015 3.985 26 C -0.172 4.172 27 C -0.214 4.214 28 C -0.210 4.210 29 C -0.103 4.103 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.068 0.932 36 H 0.232 0.768 37 H 0.237 0.763 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.134 0.866 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.074 0.926 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.342 -27.114 -1.905 27.526 hybrid contribution 0.291 1.263 0.189 1.310 sum 4.633 -25.851 -1.716 26.319 Atomic orbital electron populations 1.69614 1.05974 1.28280 1.50135 1.25282 0.95634 0.99792 0.97142 0.85844 0.79200 0.80736 0.78415 1.20361 1.20905 1.19415 1.19701 0.93367 0.82155 1.47877 0.87842 1.41853 1.09274 1.04575 1.63778 1.19659 0.88305 0.84625 0.84692 1.90409 1.13714 1.86739 1.56090 1.22135 0.94514 0.91014 1.01968 1.64590 1.13468 1.00345 1.43184 1.24133 0.98620 0.95854 0.93163 1.23014 0.94548 0.94769 0.84579 0.90661 1.86463 1.49172 1.69801 1.31337 1.21698 0.94816 0.83792 0.95667 0.87749 1.45885 1.28441 1.12998 1.49732 1.20213 0.83698 0.83929 0.82213 1.90752 1.25696 1.82851 1.39718 1.22174 0.93063 0.88382 0.99818 1.88015 1.47514 1.22266 1.70001 1.22074 0.96702 0.84038 0.95654 1.22117 1.00851 0.88706 1.05530 1.23080 1.02395 1.01012 0.94913 1.22983 1.03487 0.99346 0.95210 1.23362 0.96056 0.90851 1.00072 0.91778 0.77374 0.88931 0.92996 0.85672 0.93209 0.76762 0.76348 0.90025 0.90216 0.92559 0.92961 0.86570 0.88656 0.88502 0.88301 0.88640 0.92602 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 8 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 9 N -0.56 -13.93 5.29 -10.96 -0.06 -13.98 16 10 C 0.44 10.12 7.49 -10.98 -0.08 10.04 16 11 O -0.58 -14.80 13.09 5.55 0.07 -14.73 16 12 C 0.04 0.63 5.52 -4.97 -0.03 0.60 16 13 N -0.49 -8.00 5.26 -231.89 -1.22 -9.22 16 14 C 0.01 0.17 5.03 -1.90 -0.01 0.16 16 15 C 0.09 1.13 4.14 -24.86 -0.10 1.03 16 16 H 0.08 0.81 7.74 -51.93 -0.40 0.40 16 17 O -0.56 -6.77 13.41 -35.23 -0.47 -7.24 16 18 C 0.15 1.87 3.06 -66.57 -0.20 1.67 16 19 H 0.10 1.57 7.58 -51.93 -0.39 1.18 16 20 N -0.72 -7.34 5.03 -52.49 -0.26 -7.61 16 21 C 0.51 6.14 7.90 -10.99 -0.09 6.05 16 22 O -0.52 -8.66 16.20 -14.35 -0.23 -8.89 16 23 C 0.05 0.38 6.42 36.00 0.23 0.61 16 24 O -0.36 -3.93 9.88 -55.14 -0.54 -4.47 16 25 C 0.09 0.68 6.22 37.16 0.23 0.91 16 26 C -0.15 -1.15 6.06 -90.62 -0.55 -1.70 16 27 C -0.18 -1.09 10.18 -26.73 -0.27 -1.37 16 28 C -0.17 -0.94 10.25 -26.73 -0.27 -1.21 16 29 C 0.03 0.36 6.48 -2.75 -0.02 0.34 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.05 0.87 7.81 -51.93 -0.41 0.47 16 34 H 0.13 2.30 5.97 -51.93 -0.31 1.99 16 35 H 0.05 0.85 8.02 -51.93 -0.42 0.44 16 36 H 0.38 3.13 9.12 45.56 0.42 3.54 16 37 H 0.40 2.87 8.35 -40.82 -0.34 2.53 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 0.31 7.87 -51.93 -0.41 -0.10 16 42 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.09 0.52 8.03 -51.93 -0.42 0.11 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.80 7.57 -51.93 -0.39 0.41 16 48 H 0.09 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -34.77 400.49 -9.08 -43.86 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -6.70 Total: 14.79 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -1.40 Total: 9.27 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.82 Total: -54.30 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.18 Total: -35.33 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.77 -9.08 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191295164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.935 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds