Wall clock time and date at job start Sat Apr 11 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00388 * 2 1 4 4 H 1.48498 * 109.47317 * 269.99810 * 3 2 1 5 5 H 1.48506 * 109.47007 * 29.99794 * 3 2 1 6 6 H 1.48503 * 109.47242 * 149.99404 * 3 2 1 7 7 C 1.38950 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00007 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00289 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99669 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46965 * 180.02562 * 12 10 9 14 14 C 1.48530 * 110.99918 * 52.60015 * 13 12 10 15 15 C 1.54940 * 103.22772 * 159.72252 * 14 13 12 16 16 H 1.09000 * 110.72311 * 80.94364 * 15 14 13 17 17 O 1.42898 * 110.87937 * 204.16017 * 15 14 13 18 18 C 1.54604 * 102.91923 * 322.58912 * 15 14 13 19 19 H 1.09001 * 110.30354 * 263.04015 * 18 15 14 20 20 N 1.46496 * 110.39048 * 140.91550 * 18 15 14 21 21 C 1.34781 * 119.99785 * 157.78026 * 20 18 15 22 22 O 1.21279 * 119.99997 * 0.02562 * 21 20 18 23 23 C 1.50694 * 119.99943 * 179.97438 * 21 20 18 24 24 O 1.42903 * 109.47521 * 180.02562 * 23 21 20 25 25 C 1.42891 * 114.00450 * 180.02562 * 24 23 21 26 26 C 1.52997 * 109.47079 * 179.97438 * 25 24 23 27 27 C 1.52997 * 117.50176 * 243.61916 * 26 25 24 28 28 C 1.52998 * 60.00367 * 252.51476 * 27 26 25 29 29 C 1.47899 * 110.99831 * 170.00161 * 13 12 10 30 30 H 0.96999 * 119.99752 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99887 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47133 * 60.00295 * 12 10 9 33 33 H 1.08996 * 109.47320 * 300.00036 * 12 10 9 34 34 H 1.09002 * 110.67228 * 278.15582 * 14 13 12 35 35 H 1.09004 * 110.67104 * 41.28985 * 14 13 12 36 36 H 0.96701 * 113.99703 * 293.58520 * 17 15 14 37 37 H 0.96998 * 120.00002 * 337.77794 * 20 18 15 38 38 H 1.09000 * 109.47656 * 300.00292 * 23 21 20 39 39 H 1.08998 * 109.47436 * 60.00212 * 23 21 20 40 40 H 1.08999 * 109.47563 * 300.00199 * 25 24 23 41 41 H 1.08999 * 109.47478 * 60.00030 * 25 24 23 42 42 H 1.08996 * 115.55257 * 29.33512 * 26 25 24 43 43 H 1.09006 * 117.50158 * 0.02562 * 27 26 25 44 44 H 1.09004 * 117.50263 * 145.01841 * 27 26 25 45 45 H 1.09004 * 117.49365 * 252.51233 * 28 27 26 46 46 H 1.08991 * 117.50064 * 107.49232 * 28 27 26 47 47 H 1.08997 * 109.91760 * 333.50746 * 29 13 12 48 48 H 1.09001 * 109.91722 * 94.60704 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4401 0.7002 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8630 0.0011 13 7 2.1981 -5.9796 0.0016 14 6 3.1842 -5.8364 1.1031 15 6 3.7281 -7.2762 1.2814 16 1 4.4915 -7.4953 0.5349 17 8 4.2440 -7.4660 2.6004 18 6 2.4734 -8.1504 1.0537 19 1 2.0239 -8.4229 2.0086 20 7 2.8209 -9.3540 0.2943 21 6 2.0309 -10.4440 0.3605 22 8 1.0322 -10.4283 1.0484 23 6 2.3880 -11.6819 -0.4212 24 8 1.4044 -12.6923 -0.1889 25 6 1.6504 -13.9144 -0.8871 26 6 0.5412 -14.9179 -0.5653 27 6 0.9390 -16.1986 0.1712 28 6 0.5597 -16.2543 -1.3100 29 6 1.5089 -7.2659 0.2419 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6166 -4.9209 -0.8886 33 1 0.6172 -4.9205 0.8913 34 1 3.9854 -5.1554 0.8162 35 1 2.6951 -5.4943 2.0153 36 1 5.0319 -6.9398 2.7940 37 1 3.6194 -9.3664 -0.2563 38 1 2.4196 -11.4438 -1.4844 39 1 3.3646 -12.0447 -0.1010 40 1 1.6675 -13.7229 -1.9600 41 1 2.6116 -14.3237 -0.5759 42 1 -0.4316 -14.4847 -0.3328 43 1 1.9910 -16.3262 0.4268 44 1 0.2279 -16.6082 0.8887 45 1 -0.4010 -16.7006 -1.5670 46 1 1.3621 -16.4187 -2.0291 47 1 0.5938 -7.0965 0.8093 48 1 1.2731 -7.7441 -0.7088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191295164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:10 Heat of formation + Delta-G solvation = -149.566885 kcal Electronic energy + Delta-G solvation = -29124.602704 eV Core-core repulsion = 24793.895733 eV Total energy + Delta-G solvation = -4330.706971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44094 -40.50737 -39.51912 -38.95346 -37.30344 -36.93644 -36.00234 -35.38412 -33.33064 -31.79565 -30.02091 -28.98705 -28.03912 -26.92775 -25.85501 -23.24955 -22.92510 -22.19876 -21.72500 -21.41205 -21.07299 -19.88647 -18.77465 -18.30265 -18.00206 -17.81841 -17.33122 -16.96190 -16.68697 -16.49691 -16.31971 -16.10263 -15.76671 -15.51437 -15.33742 -15.19251 -14.86422 -14.52664 -14.34019 -13.90205 -13.83464 -13.55132 -13.48527 -13.44865 -13.27156 -13.03507 -12.88309 -12.60995 -12.42065 -12.38423 -12.12710 -12.07293 -11.79940 -11.47502 -11.39007 -11.26239 -11.19008 -10.84525 -10.50979 -10.35500 -10.13835 -10.02093 -9.47444 -8.47351 -5.96344 1.37918 1.42256 1.52412 1.54857 1.68692 2.01065 2.27109 2.62702 2.72660 3.01818 3.10208 3.19256 3.28015 3.55233 3.65552 3.85879 3.92496 3.97101 3.98240 4.14644 4.18525 4.22706 4.26032 4.28901 4.33096 4.36390 4.41411 4.48555 4.52824 4.61254 4.71652 4.75040 4.78373 4.81875 5.01869 5.09605 5.22244 5.25051 5.35787 5.40644 5.69991 5.78649 6.02194 6.09094 6.50648 6.57895 6.76037 7.10917 7.18365 7.53088 8.07334 8.70012 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027534 B = 0.001663 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.697878 B =16837.390282 C =17463.700019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.084 0.916 9 N -0.571 5.571 10 C 0.442 3.558 11 O -0.609 6.609 12 C 0.044 3.956 13 N -0.495 5.495 14 C 0.011 3.989 15 C 0.109 3.891 16 H 0.102 0.898 17 O -0.572 6.572 18 C 0.151 3.849 19 H 0.081 0.919 20 N -0.701 5.701 21 C 0.511 3.489 22 O -0.573 6.573 23 C 0.049 3.951 24 O -0.399 6.399 25 C 0.091 3.909 26 C -0.177 4.177 27 C -0.181 4.181 28 C -0.158 4.158 29 C 0.031 3.969 30 H 0.277 0.723 31 H 0.395 0.605 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.031 0.969 36 H 0.401 0.599 37 H 0.421 0.579 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.050 0.950 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.151 -28.308 -3.239 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.102 0.898 9 N -0.208 5.208 10 C 0.229 3.771 11 O -0.496 6.496 12 C -0.087 4.087 13 N -0.221 5.221 14 C -0.117 4.117 15 C 0.049 3.951 16 H 0.120 0.880 17 O -0.380 6.380 18 C 0.044 3.956 19 H 0.099 0.901 20 N -0.355 5.355 21 C 0.298 3.702 22 O -0.451 6.451 23 C -0.030 4.030 24 O -0.318 6.318 25 C 0.015 3.985 26 C -0.196 4.196 27 C -0.218 4.218 28 C -0.195 4.195 29 C -0.098 4.098 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.049 0.951 36 H 0.252 0.748 37 H 0.259 0.741 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.122 0.878 46 H 0.130 0.870 47 H 0.069 0.931 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.697 -28.532 -3.088 29.259 hybrid contribution -0.102 1.629 0.575 1.731 sum 5.595 -26.903 -2.513 27.593 Atomic orbital electron populations 1.69683 1.06962 1.29319 1.50229 1.26071 0.96506 1.02531 0.96212 0.84903 0.77898 0.76749 0.78641 1.19625 1.19814 1.19527 1.19700 0.92827 0.83779 1.49894 0.89837 1.41927 1.09329 1.04747 1.64818 1.20518 0.88294 0.85710 0.82581 1.90404 1.15150 1.87479 1.56560 1.22045 0.94385 0.88847 1.03455 1.64588 1.13432 1.00629 1.43448 1.23995 0.97739 0.97874 0.92101 1.22836 0.94839 0.91926 0.85547 0.88038 1.86440 1.50283 1.70134 1.31131 1.21431 0.94678 0.84600 0.94870 0.90057 1.45703 1.28847 1.11786 1.49191 1.20989 0.82721 0.85018 0.81489 1.90731 1.28226 1.83874 1.42300 1.22314 0.93640 0.86274 1.00817 1.87970 1.48976 1.23739 1.71119 1.22227 0.97188 0.82801 0.96272 1.22152 1.00245 0.89623 1.07557 1.23166 1.02882 1.00143 0.95608 1.23068 1.04228 0.97219 0.94954 1.23358 0.95977 0.89789 1.00692 0.91332 0.77128 0.87038 0.91758 0.88195 0.95062 0.74776 0.74114 0.86896 0.87003 0.91002 0.91261 0.88821 0.87778 0.88731 0.87847 0.87048 0.93131 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 42.37 29.55 68.60 2.03 44.40 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.33 -18.56 9.68 84.04 0.81 -17.74 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.57 -29.05 5.29 -306.98 -1.62 -30.68 16 10 C 0.44 20.55 7.49 87.66 0.66 21.20 16 11 O -0.61 -31.55 13.09 -3.06 -0.04 -31.59 16 12 C 0.04 1.56 5.52 85.56 0.47 2.03 16 13 N -0.50 -15.79 5.26 -887.56 -4.67 -20.46 16 14 C 0.01 0.36 5.03 86.65 0.44 0.80 16 15 C 0.11 2.54 4.14 31.80 0.13 2.67 16 16 H 0.10 1.88 7.74 -2.39 -0.02 1.86 16 17 O -0.57 -12.98 13.41 -148.98 -2.00 -14.97 16 18 C 0.15 3.71 3.06 45.88 0.14 3.85 16 19 H 0.08 2.45 7.58 -2.39 -0.02 2.44 16 20 N -0.70 -12.84 5.03 -438.36 -2.21 -15.05 16 21 C 0.51 11.44 7.90 87.65 0.69 12.13 16 22 O -0.57 -19.37 16.20 16.01 0.26 -19.11 16 23 C 0.05 0.67 6.42 71.23 0.46 1.13 16 24 O -0.40 -8.20 9.88 -129.94 -1.28 -9.48 16 25 C 0.09 1.17 6.22 71.98 0.45 1.62 16 26 C -0.18 -2.52 6.06 -10.79 -0.07 -2.59 16 27 C -0.18 -2.04 10.18 30.59 0.31 -1.73 16 28 C -0.16 -1.45 10.25 30.60 0.31 -1.13 16 29 C 0.03 0.83 6.48 86.45 0.56 1.39 16 30 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 32 H 0.11 3.54 8.14 -2.39 -0.02 3.53 16 33 H 0.06 2.14 7.81 -2.39 -0.02 2.12 16 34 H 0.10 3.73 5.97 -2.39 -0.01 3.71 16 35 H 0.03 1.09 8.02 -2.39 -0.02 1.07 16 36 H 0.40 5.94 9.12 -74.06 -0.68 5.26 16 37 H 0.42 4.57 8.35 -92.71 -0.77 3.79 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 0.62 7.87 -2.39 -0.02 0.61 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 43 H 0.10 0.97 8.03 -2.38 -0.02 0.95 16 44 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 45 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.05 1.43 7.57 -2.39 -0.02 1.41 16 48 H 0.10 2.39 7.93 -2.39 -0.02 2.37 16 Total: -1.00 -77.63 400.49 -4.59 -82.22 By element: Atomic # 1 Polarization: 41.88 SS G_CDS: -1.17 Total: 40.70 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: 5.83 Total: 23.39 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -8.21 Total: -115.56 kcal Atomic # 8 Polarization: -72.09 SS G_CDS: -3.06 Total: -75.15 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -77.63 -4.59 -82.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191295164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.347 kcal (2) G-P(sol) polarization free energy of solvation -77.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds