Wall clock time and date at job start Sat Apr 11 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.48532 * 111.00521 * 52.59789 * 13 12 10 15 15 C 1.54935 * 103.23120 * 159.71906 * 14 13 12 16 16 H 1.09004 * 110.71787 * 80.95135 * 15 14 13 17 17 O 1.42894 * 110.88081 * 204.15804 * 15 14 13 18 18 C 1.54592 * 102.92439 * 322.59281 * 15 14 13 19 19 H 1.09004 * 110.30956 * 263.03869 * 18 15 14 20 20 N 1.46497 * 110.31088 * 140.86784 * 18 15 14 21 21 C 1.34776 * 119.99715 * 157.83160 * 20 18 15 22 22 O 1.21281 * 120.00469 * 359.97438 * 21 20 18 23 23 C 1.50706 * 119.99716 * 180.02562 * 21 20 18 24 24 C 1.52999 * 109.46961 * 179.97438 * 23 21 20 25 25 H 1.09005 * 109.87187 * 53.98854 * 24 23 21 26 26 C 1.54105 * 109.87807 * 174.99691 * 24 23 21 27 27 C 1.54813 * 104.18742 * 121.45290 * 26 24 23 28 28 C 1.54997 * 102.09248 * 20.88100 * 27 26 24 29 29 O 1.43744 * 109.88074 * 292.82703 * 24 23 21 30 30 C 1.47902 * 111.00335 * 169.99982 * 13 12 10 31 31 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 34 34 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 35 35 H 1.08996 * 110.66766 * 278.16308 * 14 13 12 36 36 H 1.09006 * 110.66183 * 41.29019 * 14 13 12 37 37 H 0.96705 * 114.00060 * 293.59281 * 17 15 14 38 38 H 0.97003 * 120.00180 * 337.83002 * 20 18 15 39 39 H 1.09001 * 109.46949 * 299.99422 * 23 21 20 40 40 H 1.08994 * 109.47141 * 59.99510 * 23 21 20 41 41 H 1.09001 * 110.48467 * 240.12621 * 26 24 23 42 42 H 1.08994 * 110.48434 * 2.64187 * 26 24 23 43 43 H 1.08994 * 110.90700 * 139.07264 * 27 26 24 44 44 H 1.08994 * 110.90909 * 262.68429 * 27 26 24 45 45 H 1.08996 * 110.62132 * 81.47415 * 28 27 26 46 46 H 1.08998 * 110.61804 * 204.32054 * 28 27 26 47 47 H 1.09004 * 109.91425 * 333.50442 * 30 13 12 48 48 H 1.08994 * 109.92051 * 94.79797 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 3.1843 -5.8316 1.1192 15 6 3.7282 -7.2706 1.3039 16 1 4.4917 -7.4929 0.5583 17 8 4.2442 -7.4546 2.6236 18 6 2.4736 -8.1457 1.0800 19 1 2.0240 -8.4141 2.0360 20 7 2.8229 -9.3515 0.3248 21 6 2.0339 -10.4419 0.3938 22 8 1.0350 -10.4252 1.0814 23 6 2.3935 -11.6825 -0.3827 24 6 1.3417 -12.7647 -0.1306 25 1 0.3482 -12.3743 -0.3512 26 6 1.6307 -13.9926 -1.0157 27 6 1.8082 -15.1539 -0.0074 28 6 1.0833 -14.6069 1.2487 29 8 1.4063 -13.1997 1.2379 30 6 1.5091 -7.2648 0.2643 31 1 -0.4850 0.8400 -0.0004 32 1 0.3533 -2.3906 0.0005 33 1 0.6167 -4.9162 0.9030 34 1 0.6174 -4.9252 -0.8769 35 1 3.9854 -5.1517 0.8294 36 1 2.6952 -5.4855 2.0298 37 1 5.0321 -6.9275 2.8149 38 1 3.6220 -9.3650 -0.2250 39 1 2.4265 -11.4483 -1.4467 40 1 3.3700 -12.0431 -0.0595 41 1 0.7899 -14.1899 -1.6807 42 1 2.5439 -13.8415 -1.5913 43 1 1.3258 -16.0613 -0.3705 44 1 2.8634 -15.3318 0.1992 45 1 0.0065 -14.7541 1.1650 46 1 1.4658 -15.0841 2.1509 47 1 0.5940 -7.0930 0.8310 48 1 1.2764 -7.7488 -0.6842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191295309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:13 Heat of formation + Delta-G solvation = -152.680100 kcal Electronic energy + Delta-G solvation = -29801.801172 eV Core-core repulsion = 25470.959202 eV Total energy + Delta-G solvation = -4330.841970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.45608 -39.66710 -38.72034 -37.73338 -35.74553 -34.42272 -33.81742 -32.75654 -31.98477 -31.33574 -30.09068 -28.10055 -27.05500 -26.04920 -24.20882 -22.71237 -21.69173 -21.42823 -20.73792 -20.30502 -19.28146 -17.95889 -17.63728 -17.41184 -16.60635 -16.23746 -16.12889 -16.05166 -15.66033 -15.13135 -14.75917 -14.70867 -14.53754 -14.12228 -13.98248 -13.76427 -13.74908 -13.15702 -13.05575 -12.85901 -12.69218 -12.43506 -12.26882 -12.07596 -12.02998 -11.67933 -11.59985 -11.56622 -11.45464 -11.31858 -11.10704 -10.99971 -10.60563 -10.43809 -10.25055 -10.13058 -9.93687 -9.76801 -9.51037 -9.18480 -8.44150 -8.06805 -7.95421 -6.45029 -3.86332 2.59353 2.98969 3.17427 3.23935 3.27732 3.55865 3.82765 3.86129 4.12832 4.13658 4.30740 4.38791 4.49669 4.56038 4.64977 4.70681 4.87427 4.90588 5.00987 5.05360 5.14263 5.15626 5.22457 5.28520 5.30311 5.39154 5.39880 5.46521 5.49591 5.61921 5.72514 5.73963 5.81226 5.87130 5.90944 6.11145 6.21661 6.40993 6.51344 6.66309 7.05285 7.17211 7.40818 7.51544 7.60381 8.01472 8.17580 8.56955 9.13549 9.49393 10.00378 10.72371 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030209 B = 0.001823 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.640052 B =15353.458570 C =15786.273677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.559 5.559 10 C 0.442 3.558 11 O -0.584 6.584 12 C 0.035 3.965 13 N -0.491 5.491 14 C 0.010 3.990 15 C 0.091 3.909 16 H 0.074 0.926 17 O -0.562 6.562 18 C 0.144 3.856 19 H 0.103 0.897 20 N -0.721 5.721 21 C 0.514 3.486 22 O -0.526 6.526 23 C -0.141 4.141 24 C 0.092 3.908 25 H 0.077 0.923 26 C -0.154 4.154 27 C -0.156 4.156 28 C 0.043 3.957 29 O -0.359 6.359 30 C 0.027 3.973 31 H 0.273 0.727 32 H 0.393 0.607 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.049 0.951 37 H 0.383 0.617 38 H 0.400 0.600 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -27.077 -1.821 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.195 5.195 10 C 0.227 3.773 11 O -0.469 6.469 12 C -0.096 4.096 13 N -0.216 5.216 14 C -0.118 4.118 15 C 0.031 3.969 16 H 0.092 0.908 17 O -0.367 6.367 18 C 0.038 3.962 19 H 0.121 0.879 20 N -0.373 5.373 21 C 0.300 3.700 22 O -0.402 6.402 23 C -0.181 4.181 24 C 0.034 3.966 25 H 0.095 0.905 26 C -0.192 4.192 27 C -0.194 4.194 28 C -0.034 4.034 29 O -0.277 6.277 30 C -0.102 4.102 31 H 0.083 0.917 32 H 0.226 0.774 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.143 0.857 36 H 0.067 0.933 37 H 0.231 0.769 38 H 0.235 0.765 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.073 0.927 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.637 -27.158 -1.598 27.447 hybrid contribution 0.039 1.182 0.186 1.197 sum 3.675 -25.977 -1.412 26.273 Atomic orbital electron populations 1.69606 1.05962 1.28374 1.50108 1.25283 0.95642 0.99790 0.97156 0.85902 0.78759 0.80393 0.79057 1.19872 1.20950 1.19900 1.19653 0.93337 0.82168 1.47951 0.87900 1.41847 1.09261 1.04565 1.63819 1.19665 0.88309 0.84628 0.84667 1.90411 1.13720 1.86745 1.56059 1.22131 0.94525 0.91042 1.01920 1.64586 1.13451 1.00382 1.43183 1.24129 0.98581 0.95954 0.93124 1.23017 0.94636 0.94799 0.84490 0.90775 1.86471 1.49108 1.69880 1.31278 1.21664 0.94602 0.84108 0.95778 0.87916 1.46040 1.28489 1.13093 1.49727 1.20528 0.83413 0.84070 0.81957 1.90739 1.26237 1.83071 1.40108 1.21929 1.01370 0.93355 1.01452 1.22455 0.98490 0.93146 0.82513 0.90525 1.23042 1.03083 0.94486 0.98553 1.23136 1.01891 0.98462 0.95861 1.23550 0.99075 0.82257 0.98513 1.89030 1.90833 1.23092 1.24788 1.23358 0.96070 0.90873 0.99939 0.91735 0.77378 0.93032 0.88976 0.85748 0.93272 0.76870 0.76535 0.87584 0.88165 0.90353 0.90159 0.90267 0.90497 0.92240 0.89084 0.92740 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -14.04 5.29 -10.96 -0.06 -14.09 16 10 C 0.44 10.24 7.49 -10.99 -0.08 10.15 16 11 O -0.58 -14.97 13.09 5.55 0.07 -14.90 16 12 C 0.04 0.64 5.52 -4.98 -0.03 0.62 16 13 N -0.49 -8.19 5.26 -231.89 -1.22 -9.41 16 14 C 0.01 0.17 5.03 -1.90 -0.01 0.16 16 15 C 0.09 1.19 4.14 -24.87 -0.10 1.08 16 16 H 0.07 0.85 7.74 -51.93 -0.40 0.45 16 17 O -0.56 -7.18 13.41 -35.23 -0.47 -7.66 16 18 C 0.14 1.94 3.06 -66.57 -0.20 1.74 16 19 H 0.10 1.63 7.58 -51.93 -0.39 1.24 16 20 N -0.72 -7.84 5.03 -52.49 -0.26 -8.10 16 21 C 0.51 6.16 7.72 -10.98 -0.08 6.08 16 22 O -0.53 -8.62 15.21 -5.76 -0.09 -8.71 16 23 C -0.14 -1.11 5.19 -27.88 -0.14 -1.25 16 24 C 0.09 0.82 2.93 -26.15 -0.08 0.75 16 25 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 26 C -0.15 -0.87 6.64 -25.20 -0.17 -1.04 16 27 C -0.16 -0.85 7.15 -24.72 -0.18 -1.03 16 28 C 0.04 0.33 7.72 38.21 0.29 0.62 16 29 O -0.36 -4.15 10.58 -46.55 -0.49 -4.64 16 30 C 0.03 0.39 6.49 -2.75 -0.02 0.37 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 32 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 33 H 0.05 0.88 7.81 -51.93 -0.41 0.47 16 34 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.12 2.35 5.97 -51.93 -0.31 2.04 16 36 H 0.05 0.87 8.02 -51.93 -0.42 0.45 16 37 H 0.38 3.38 9.12 45.56 0.42 3.79 16 38 H 0.40 3.23 8.35 -40.82 -0.34 2.89 16 39 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.35 7.70 -51.93 -0.40 -0.05 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.80 7.57 -51.93 -0.39 0.41 16 48 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 LS Contribution 390.26 15.07 5.88 5.88 Total: -1.00 -34.92 390.26 -8.66 -43.59 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -6.68 Total: 15.52 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -1.04 Total: 10.33 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.82 Total: -55.22 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.98 Total: -35.90 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.92 -8.66 -43.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191295309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.094 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds