Wall clock time and date at job start Sat Apr 11 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.48532 * 111.00521 * 52.59789 * 13 12 10 15 15 C 1.54935 * 103.23120 * 159.71906 * 14 13 12 16 16 H 1.09004 * 110.71787 * 80.95135 * 15 14 13 17 17 O 1.42894 * 110.88081 * 204.15804 * 15 14 13 18 18 C 1.54592 * 102.92439 * 322.59281 * 15 14 13 19 19 H 1.09004 * 110.30956 * 263.03869 * 18 15 14 20 20 N 1.46497 * 110.31088 * 140.86784 * 18 15 14 21 21 C 1.34776 * 119.99715 * 157.83160 * 20 18 15 22 22 O 1.21281 * 120.00469 * 359.97438 * 21 20 18 23 23 C 1.50706 * 119.99716 * 180.02562 * 21 20 18 24 24 C 1.52999 * 109.46961 * 179.97438 * 23 21 20 25 25 H 1.09005 * 109.87187 * 53.98854 * 24 23 21 26 26 C 1.54105 * 109.87807 * 174.99691 * 24 23 21 27 27 C 1.54813 * 104.18742 * 121.45290 * 26 24 23 28 28 C 1.54997 * 102.09248 * 20.88100 * 27 26 24 29 29 O 1.43744 * 109.88074 * 292.82703 * 24 23 21 30 30 C 1.47902 * 111.00335 * 169.99982 * 13 12 10 31 31 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 34 34 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 35 35 H 1.08996 * 110.66766 * 278.16308 * 14 13 12 36 36 H 1.09006 * 110.66183 * 41.29019 * 14 13 12 37 37 H 0.96705 * 114.00060 * 293.59281 * 17 15 14 38 38 H 0.97003 * 120.00180 * 337.83002 * 20 18 15 39 39 H 1.09001 * 109.46949 * 299.99422 * 23 21 20 40 40 H 1.08994 * 109.47141 * 59.99510 * 23 21 20 41 41 H 1.09001 * 110.48467 * 240.12621 * 26 24 23 42 42 H 1.08994 * 110.48434 * 2.64187 * 26 24 23 43 43 H 1.08994 * 110.90700 * 139.07264 * 27 26 24 44 44 H 1.08994 * 110.90909 * 262.68429 * 27 26 24 45 45 H 1.08996 * 110.62132 * 81.47415 * 28 27 26 46 46 H 1.08998 * 110.61804 * 204.32054 * 28 27 26 47 47 H 1.09004 * 109.91425 * 333.50442 * 30 13 12 48 48 H 1.08994 * 109.92051 * 94.79797 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 3.1843 -5.8316 1.1192 15 6 3.7282 -7.2706 1.3039 16 1 4.4917 -7.4929 0.5583 17 8 4.2442 -7.4546 2.6236 18 6 2.4736 -8.1457 1.0800 19 1 2.0240 -8.4141 2.0360 20 7 2.8229 -9.3515 0.3248 21 6 2.0339 -10.4419 0.3938 22 8 1.0350 -10.4252 1.0814 23 6 2.3935 -11.6825 -0.3827 24 6 1.3417 -12.7647 -0.1306 25 1 0.3482 -12.3743 -0.3512 26 6 1.6307 -13.9926 -1.0157 27 6 1.8082 -15.1539 -0.0074 28 6 1.0833 -14.6069 1.2487 29 8 1.4063 -13.1997 1.2379 30 6 1.5091 -7.2648 0.2643 31 1 -0.4850 0.8400 -0.0004 32 1 0.3533 -2.3906 0.0005 33 1 0.6167 -4.9162 0.9030 34 1 0.6174 -4.9252 -0.8769 35 1 3.9854 -5.1517 0.8294 36 1 2.6952 -5.4855 2.0298 37 1 5.0321 -6.9275 2.8149 38 1 3.6220 -9.3650 -0.2250 39 1 2.4265 -11.4483 -1.4467 40 1 3.3700 -12.0431 -0.0595 41 1 0.7899 -14.1899 -1.6807 42 1 2.5439 -13.8415 -1.5913 43 1 1.3258 -16.0613 -0.3705 44 1 2.8634 -15.3318 0.1992 45 1 0.0065 -14.7541 1.1650 46 1 1.4658 -15.0841 2.1509 47 1 0.5940 -7.0930 0.8310 48 1 1.2764 -7.7488 -0.6842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191295309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:12 Heat of formation + Delta-G solvation = -183.595754 kcal Electronic energy + Delta-G solvation = -29803.141775 eV Core-core repulsion = 25470.959202 eV Total energy + Delta-G solvation = -4332.182573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46098 -40.69961 -39.93301 -39.12455 -36.94687 -35.99822 -35.30815 -33.43295 -33.31876 -32.58460 -31.32881 -29.26213 -28.26741 -27.17835 -25.90542 -23.37954 -22.85033 -22.19970 -21.65359 -21.31506 -21.05471 -19.88842 -18.72322 -18.29873 -17.82242 -17.43209 -17.01464 -16.81236 -16.70016 -16.47828 -16.32117 -16.09603 -15.70350 -15.53891 -15.28574 -14.92066 -14.48660 -14.45029 -14.36578 -13.86025 -13.84652 -13.53415 -13.45957 -13.41046 -13.04013 -13.00813 -12.81945 -12.61168 -12.53662 -12.43805 -12.19384 -12.13468 -11.97028 -11.78385 -11.53622 -11.47321 -11.19567 -10.77847 -10.60541 -10.31092 -10.10287 -10.02479 -9.47694 -8.47446 -5.96565 1.39379 1.41833 1.52795 1.68892 2.00573 2.09609 2.27081 2.62766 2.99861 3.09026 3.18924 3.28676 3.56523 3.63619 3.71681 3.83044 3.97219 3.99211 4.06865 4.16075 4.18763 4.25754 4.32026 4.34797 4.41277 4.47974 4.51769 4.61013 4.66714 4.73402 4.80523 4.84329 4.85972 4.97147 5.01975 5.09191 5.15439 5.26618 5.39964 5.45352 5.69714 5.78565 6.01905 6.07122 6.56897 6.57629 6.75010 7.10466 7.30369 7.52633 8.07001 8.69662 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030209 B = 0.001823 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.640052 B =15353.458570 C =15786.273677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.083 0.917 9 N -0.571 5.571 10 C 0.441 3.559 11 O -0.610 6.610 12 C 0.044 3.956 13 N -0.495 5.495 14 C 0.012 3.988 15 C 0.107 3.893 16 H 0.099 0.901 17 O -0.573 6.573 18 C 0.149 3.851 19 H 0.077 0.923 20 N -0.708 5.708 21 C 0.509 3.491 22 O -0.577 6.577 23 C -0.132 4.132 24 C 0.083 3.917 25 H 0.053 0.947 26 C -0.146 4.146 27 C -0.149 4.149 28 C 0.032 3.968 29 O -0.397 6.397 30 C 0.033 3.967 31 H 0.278 0.722 32 H 0.395 0.605 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.030 0.970 37 H 0.400 0.600 38 H 0.417 0.583 39 H 0.142 0.858 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.096 0.904 47 H 0.049 0.951 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.995 -28.566 -3.208 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.101 0.899 9 N -0.208 5.208 10 C 0.229 3.771 11 O -0.496 6.496 12 C -0.087 4.087 13 N -0.221 5.221 14 C -0.117 4.117 15 C 0.047 3.953 16 H 0.117 0.883 17 O -0.381 6.381 18 C 0.043 3.957 19 H 0.095 0.905 20 N -0.362 5.362 21 C 0.297 3.703 22 O -0.456 6.456 23 C -0.172 4.172 24 C 0.025 3.975 25 H 0.071 0.929 26 C -0.184 4.184 27 C -0.186 4.186 28 C -0.045 4.045 29 O -0.317 6.317 30 C -0.096 4.096 31 H 0.087 0.913 32 H 0.229 0.771 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.049 0.951 37 H 0.251 0.749 38 H 0.255 0.745 39 H 0.160 0.840 40 H 0.137 0.863 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.114 0.886 47 H 0.068 0.932 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.748 -28.669 -3.004 29.215 hybrid contribution -0.301 1.586 0.671 1.748 sum 4.448 -27.084 -2.332 27.545 Atomic orbital electron populations 1.69678 1.06946 1.29399 1.50138 1.26082 0.96533 1.02558 0.96206 0.84957 0.77707 0.76483 0.79003 1.19542 1.19704 1.19647 1.19663 0.92824 0.83779 1.49993 0.89854 1.41920 1.09326 1.04731 1.64799 1.20519 0.88291 0.85719 0.82608 1.90406 1.15175 1.87483 1.56582 1.22045 0.94375 0.88842 1.03450 1.64589 1.13429 1.00702 1.43365 1.23985 0.97750 0.97829 0.92107 1.22853 0.94940 0.92125 0.85366 0.88308 1.86447 1.50230 1.70248 1.31129 1.21392 0.94450 0.84986 0.94895 0.90515 1.45914 1.28971 1.12002 1.49303 1.21342 0.82504 0.85085 0.81362 1.90722 1.28525 1.83968 1.42378 1.22018 1.01702 0.90688 1.02748 1.22590 0.97824 0.94827 0.82302 0.92863 1.23030 1.04498 0.92687 0.98148 1.23124 1.02084 0.98951 0.94461 1.23749 0.99454 0.81078 1.00187 1.88991 1.91003 1.25097 1.26638 1.23350 0.95902 0.89766 1.00596 0.91309 0.77114 0.91817 0.86963 0.88240 0.95141 0.74878 0.74500 0.84050 0.86251 0.89430 0.87999 0.88531 0.89882 0.92424 0.88612 0.93250 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.83 13.05 21.66 0.28 -49.55 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 3 Si 1.00 42.58 29.55 68.60 2.03 44.60 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.57 -29.24 5.29 -306.98 -1.62 -30.87 16 10 C 0.44 20.76 7.49 87.66 0.66 21.42 16 11 O -0.61 -31.96 13.09 -3.07 -0.04 -32.00 16 12 C 0.04 1.59 5.52 85.56 0.47 2.06 16 13 N -0.50 -16.20 5.26 -887.58 -4.67 -20.87 16 14 C 0.01 0.39 5.03 86.65 0.44 0.82 16 15 C 0.11 2.68 4.14 31.80 0.13 2.81 16 16 H 0.10 2.02 7.74 -2.38 -0.02 2.00 16 17 O -0.57 -14.04 13.41 -148.98 -2.00 -16.04 16 18 C 0.15 3.90 3.06 45.87 0.14 4.05 16 19 H 0.08 2.47 7.58 -2.38 -0.02 2.45 16 20 N -0.71 -14.09 5.03 -438.36 -2.20 -16.30 16 21 C 0.51 11.60 7.72 87.66 0.68 12.27 16 22 O -0.58 -19.18 15.21 7.79 0.12 -19.06 16 23 C -0.13 -1.75 5.19 29.85 0.15 -1.59 16 24 C 0.08 1.38 2.93 30.97 0.09 1.47 16 25 H 0.05 1.10 7.93 -2.38 -0.02 1.08 16 26 C -0.15 -1.26 6.64 31.59 0.21 -1.05 16 27 C -0.15 -1.28 7.15 31.90 0.23 -1.05 16 28 C 0.03 0.47 7.72 72.67 0.56 1.03 16 29 O -0.40 -9.15 10.58 -138.16 -1.46 -10.61 16 30 C 0.03 0.91 6.49 86.45 0.56 1.47 16 31 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 33 H 0.06 2.16 7.81 -2.39 -0.02 2.14 16 34 H 0.11 3.60 8.14 -2.39 -0.02 3.59 16 35 H 0.10 3.82 5.97 -2.39 -0.01 3.80 16 36 H 0.03 1.10 8.02 -2.38 -0.02 1.08 16 37 H 0.40 6.58 9.12 -74.05 -0.68 5.91 16 38 H 0.42 5.44 8.35 -92.71 -0.77 4.67 16 39 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.10 0.46 7.70 -2.39 -0.02 0.44 16 43 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.05 1.43 7.57 -2.38 -0.02 1.41 16 48 H 0.10 2.45 7.92 -2.39 -0.02 2.43 16 Total: -1.00 -78.08 390.26 -5.14 -83.21 By element: Atomic # 1 Polarization: 43.08 SS G_CDS: -1.17 Total: 41.91 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 5.60 Total: 25.56 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -8.21 Total: -117.58 kcal Atomic # 8 Polarization: -74.33 SS G_CDS: -3.38 Total: -77.71 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -78.08 -5.14 -83.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191295309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.381 kcal (2) G-P(sol) polarization free energy of solvation -78.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds