Wall clock time and date at job start Sat Apr 11 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00094 * 2 1 4 4 H 1.48498 * 109.47084 * 269.99918 * 3 2 1 5 5 H 1.48503 * 109.47289 * 29.99933 * 3 2 1 6 6 H 1.48502 * 109.47432 * 149.99993 * 3 2 1 7 7 C 1.38956 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99649 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00099 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00017 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99714 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00485 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47703 * 179.97438 * 12 10 9 14 14 C 1.47845 * 110.99533 * 49.15689 * 13 12 10 15 15 C 1.55116 * 104.90549 * 146.24152 * 14 13 12 16 16 H 1.09000 * 110.92386 * 81.16869 * 15 14 13 17 17 O 1.42895 * 111.14737 * 205.05032 * 15 14 13 18 18 C 1.55144 * 101.55675 * 323.15558 * 15 14 13 19 19 H 1.08996 * 110.70769 * 276.96669 * 18 15 14 20 20 N 1.46499 * 110.70339 * 153.90283 * 18 15 14 21 21 C 1.34784 * 119.99893 * 157.40604 * 20 18 15 22 22 O 1.21283 * 119.99649 * 0.02562 * 21 20 18 23 23 C 1.50697 * 119.99774 * 179.72962 * 21 20 18 24 24 H 1.09004 * 109.52292 * 299.99408 * 23 21 20 25 25 C 1.53183 * 109.52010 * 179.87516 * 23 21 20 26 26 C 1.53183 * 109.03391 * 183.17502 * 25 23 21 27 27 C 1.53096 * 109.21175 * 56.88086 * 26 25 23 28 28 O 1.42904 * 109.41676 * 302.42409 * 27 26 25 29 29 C 1.42905 * 114.09522 * 61.16033 * 28 27 26 30 30 C 1.47439 * 111.00235 * 169.99727 * 13 12 10 31 31 H 0.96996 * 119.99953 * 0.02562 * 1 2 3 32 32 H 0.96994 * 120.00357 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.46965 * 59.99616 * 12 10 9 34 34 H 1.09007 * 109.46879 * 300.00157 * 12 10 9 35 35 H 1.09002 * 110.37493 * 265.19577 * 14 13 12 36 36 H 1.09000 * 110.37725 * 27.53356 * 14 13 12 37 37 H 0.96702 * 113.99914 * 292.24183 * 17 15 14 38 38 H 0.97005 * 120.00261 * 337.40816 * 20 18 15 39 39 H 1.09004 * 109.53715 * 302.97749 * 25 23 21 40 40 H 1.08997 * 109.54317 * 63.23917 * 25 23 21 41 41 H 1.09004 * 109.46957 * 296.98243 * 26 25 23 42 42 H 1.08992 * 109.57761 * 176.85308 * 26 25 23 43 43 H 1.09005 * 109.47426 * 182.44208 * 27 26 25 44 44 H 1.08999 * 109.48935 * 62.42178 * 27 26 25 45 45 H 1.08996 * 109.47883 * 178.85648 * 29 28 27 46 46 H 1.09004 * 109.47671 * 58.82436 * 29 28 27 47 47 H 1.08999 * 109.89004 * 117.33882 * 30 13 12 48 48 H 1.09008 * 109.88769 * 356.15194 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5607 -2.3706 0.0012 13 7 6.0505 -3.7556 0.0015 14 6 5.3768 -4.5559 -1.0432 15 6 6.4524 -5.5614 -1.5311 16 1 6.5253 -6.4125 -0.8540 17 8 6.1858 -5.9938 -2.8667 18 6 7.7375 -4.6940 -1.4739 19 1 7.8331 -4.0870 -2.3741 20 7 8.9226 -5.5354 -1.2903 21 6 10.1362 -5.0799 -1.6593 22 8 10.2472 -3.9732 -2.1429 23 6 11.3561 -5.9431 -1.4648 24 1 11.4733 -6.1749 -0.4062 25 6 12.5965 -5.1966 -1.9657 26 6 13.8171 -6.1130 -1.8365 27 6 13.5612 -7.4058 -2.6156 28 8 12.3773 -8.0334 -2.1190 29 6 11.1953 -7.2423 -2.2583 30 6 7.5048 -3.8019 -0.2364 31 1 -0.4850 0.8400 -0.0004 32 1 3.8649 -0.3634 0.0004 33 1 5.9234 -1.8571 0.8916 34 1 5.9248 -1.8563 -0.8884 35 1 4.5227 -5.0868 -0.6228 36 1 5.0590 -3.9155 -1.8660 37 1 5.3919 -6.5392 -2.9525 38 1 8.8338 -6.4204 -0.9032 39 1 12.4582 -4.9201 -3.0109 40 1 12.7483 -4.2987 -1.3666 41 1 13.9851 -6.3484 -0.7855 42 1 14.6953 -5.6109 -2.2421 43 1 14.4093 -8.0792 -2.4909 44 1 13.4337 -7.1739 -3.6730 45 1 10.3390 -7.7980 -1.8763 46 1 11.0367 -7.0081 -3.3110 47 1 8.0088 -4.2305 0.6298 48 1 7.8814 -2.7969 -0.4277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191677022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:18 Heat of formation + Delta-G solvation = -152.132985 kcal Electronic energy + Delta-G solvation = -30227.754015 eV Core-core repulsion = 25896.935769 eV Total energy + Delta-G solvation = -4330.818245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83370 -39.75740 -38.77060 -37.90220 -35.87350 -34.68299 -34.02480 -33.91687 -32.00547 -31.73957 -30.11849 -28.13025 -26.73094 -25.44060 -24.82996 -23.98212 -21.76748 -21.50394 -20.73655 -20.25498 -19.46542 -18.37749 -17.77878 -17.55893 -16.79271 -16.62280 -16.34104 -15.92492 -15.51348 -15.29289 -15.09625 -14.87095 -14.59490 -14.43266 -14.08863 -14.04478 -13.47723 -13.45892 -13.11851 -13.02969 -12.92458 -12.90127 -12.49860 -12.34558 -12.15222 -11.96338 -11.93836 -11.59352 -11.48094 -11.40986 -11.14757 -10.90276 -10.72332 -10.61344 -10.31691 -10.08805 -10.01523 -9.87653 -9.59896 -9.43463 -8.54165 -8.23380 -8.06034 -6.35440 -3.87052 2.30040 2.75882 3.00857 3.05133 3.13422 3.36065 3.65834 3.69452 4.06855 4.12212 4.19208 4.27332 4.32428 4.39779 4.45652 4.63727 4.71348 4.77470 4.88302 4.90288 4.91590 5.10046 5.16996 5.19753 5.23050 5.28260 5.29061 5.38368 5.48744 5.52661 5.63391 5.66358 5.73310 5.79639 5.84256 5.86496 6.03874 6.19793 6.40527 6.63913 6.99449 7.05112 7.17386 7.49798 7.53107 7.90879 8.08901 8.54267 8.89732 9.37244 9.75952 10.77331 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025462 B = 0.002060 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.393313 B =13591.202815 C =14307.452318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.586 5.586 10 C 0.449 3.551 11 O -0.566 6.566 12 C 0.035 3.965 13 N -0.502 5.502 14 C 0.032 3.968 15 C 0.080 3.920 16 H 0.076 0.924 17 O -0.559 6.559 18 C 0.131 3.869 19 H 0.104 0.896 20 N -0.715 5.715 21 C 0.521 3.479 22 O -0.533 6.533 23 C -0.143 4.143 24 H 0.108 0.892 25 C -0.103 4.103 26 C -0.156 4.156 27 C 0.056 3.944 28 O -0.377 6.377 29 C 0.072 3.928 30 C 0.033 3.967 31 H 0.274 0.726 32 H 0.371 0.629 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.112 0.888 36 H 0.056 0.944 37 H 0.385 0.615 38 H 0.402 0.598 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.053 0.947 45 H 0.099 0.901 46 H 0.058 0.942 47 H 0.084 0.916 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.261 -13.116 -3.552 29.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.138 0.862 9 N -0.225 5.225 10 C 0.235 3.765 11 O -0.449 6.449 12 C -0.096 4.096 13 N -0.227 5.227 14 C -0.096 4.096 15 C 0.020 3.980 16 H 0.094 0.906 17 O -0.365 6.365 18 C 0.025 3.975 19 H 0.122 0.878 20 N -0.367 5.367 21 C 0.307 3.693 22 O -0.409 6.409 23 C -0.165 4.165 24 H 0.126 0.874 25 C -0.141 4.141 26 C -0.194 4.194 27 C -0.021 4.021 28 O -0.295 6.295 29 C -0.005 4.005 30 C -0.096 4.096 31 H 0.085 0.915 32 H 0.204 0.796 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.130 0.870 36 H 0.075 0.925 37 H 0.233 0.767 38 H 0.236 0.764 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.117 0.883 46 H 0.076 0.924 47 H 0.102 0.898 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 26.139 -12.935 -3.465 29.370 hybrid contribution 0.133 1.510 -0.437 1.577 sum 26.272 -11.425 -3.902 28.914 Atomic orbital electron populations 1.69616 1.05645 1.27591 1.49012 1.25047 0.95508 0.98034 0.97503 0.86680 0.79839 0.84003 0.78950 1.19592 1.20090 1.19428 1.19420 0.79127 0.96644 1.48250 0.86215 1.42195 1.07603 1.06143 1.66580 1.19590 0.88060 0.84622 0.84213 1.90515 1.69469 1.30564 1.54303 1.22219 0.95403 0.90087 1.01938 1.63418 1.02086 1.10517 1.46720 1.23760 0.96961 0.95526 0.93397 1.23347 0.94139 0.96468 0.84046 0.90604 1.86464 1.49780 1.73160 1.27048 1.22163 0.83265 0.92313 0.99726 0.87845 1.45950 1.06470 1.19866 1.64402 1.20445 0.84181 0.87330 0.77355 1.90725 1.85890 1.20807 1.43499 1.22033 0.94226 0.96690 1.03541 0.87423 1.21415 0.91865 0.98009 1.02794 1.22231 0.98614 0.96581 1.01992 1.22663 0.87846 0.94564 0.96992 1.87970 1.15829 1.42315 1.83387 1.22505 0.88456 0.90256 0.99305 1.23278 0.89879 0.99806 0.96675 0.91547 0.79619 0.88824 0.92928 0.86983 0.92516 0.76706 0.76357 0.90848 0.90507 0.90829 0.90314 0.88580 0.92911 0.88290 0.92351 0.89791 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.96 55.50 0.77 -24.66 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.31 27.74 -169.99 -4.71 14.60 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.40 6.52 56.52 0.37 -5.04 16 7 C -0.31 -8.52 10.16 -14.93 -0.15 -8.68 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 N -0.59 -13.82 5.09 -10.96 -0.06 -13.87 16 10 C 0.45 9.97 7.31 -10.99 -0.08 9.89 16 11 O -0.57 -14.31 13.13 5.54 0.07 -14.23 16 12 C 0.04 0.59 5.31 -4.98 -0.03 0.57 16 13 N -0.50 -7.81 5.21 -232.55 -1.21 -9.02 16 14 C 0.03 0.49 4.69 -2.18 -0.01 0.48 16 15 C 0.08 0.94 4.05 -24.48 -0.10 0.84 16 16 H 0.08 0.74 8.01 -51.93 -0.42 0.33 16 17 O -0.56 -6.47 13.48 -35.23 -0.47 -6.94 16 18 C 0.13 1.57 3.00 -66.11 -0.20 1.37 16 19 H 0.10 1.50 7.62 -51.93 -0.40 1.11 16 20 N -0.72 -6.65 5.02 -52.04 -0.26 -6.91 16 21 C 0.52 5.45 7.16 -10.98 -0.08 5.38 16 22 O -0.53 -7.74 15.66 5.56 0.09 -7.65 16 23 C -0.14 -1.08 2.73 -91.63 -0.25 -1.33 16 24 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 25 C -0.10 -0.79 4.62 -26.54 -0.12 -0.91 16 26 C -0.16 -0.89 6.13 -26.59 -0.16 -1.05 16 27 C 0.06 0.33 6.84 37.21 0.25 0.59 16 28 O -0.38 -3.01 10.77 -35.23 -0.38 -3.39 16 29 C 0.07 0.51 6.00 37.20 0.22 0.73 16 30 C 0.03 0.42 6.63 -2.84 -0.02 0.40 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.05 0.81 7.96 -51.93 -0.41 0.40 16 35 H 0.11 1.98 6.71 -51.93 -0.35 1.63 16 36 H 0.06 0.99 7.54 -51.93 -0.39 0.60 16 37 H 0.38 3.02 9.12 45.56 0.42 3.44 16 38 H 0.40 2.65 8.01 -40.82 -0.33 2.32 16 39 H 0.07 0.64 8.03 -51.93 -0.42 0.23 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.10 0.55 7.64 -51.93 -0.40 0.15 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.97 8.03 -51.93 -0.42 0.56 16 48 H 0.07 0.85 7.49 -51.92 -0.39 0.46 16 LS Contribution 383.66 15.07 5.78 5.78 Total: -1.00 -34.85 383.66 -7.87 -42.71 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -6.67 Total: 14.26 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -0.82 Total: 9.32 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.75 Total: -54.46 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.69 Total: -32.22 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.85 -7.87 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191677022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.420 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds