Wall clock time and date at job start Sat Apr 11 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00094 * 2 1 4 4 H 1.48498 * 109.47084 * 269.99918 * 3 2 1 5 5 H 1.48503 * 109.47289 * 29.99933 * 3 2 1 6 6 H 1.48502 * 109.47432 * 149.99993 * 3 2 1 7 7 C 1.38956 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99649 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00099 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00017 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99714 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00485 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47703 * 179.97438 * 12 10 9 14 14 C 1.47845 * 110.99533 * 49.15689 * 13 12 10 15 15 C 1.55116 * 104.90549 * 146.24152 * 14 13 12 16 16 H 1.09000 * 110.92386 * 81.16869 * 15 14 13 17 17 O 1.42895 * 111.14737 * 205.05032 * 15 14 13 18 18 C 1.55144 * 101.55675 * 323.15558 * 15 14 13 19 19 H 1.08996 * 110.70769 * 276.96669 * 18 15 14 20 20 N 1.46499 * 110.70339 * 153.90283 * 18 15 14 21 21 C 1.34784 * 119.99893 * 157.40604 * 20 18 15 22 22 O 1.21283 * 119.99649 * 0.02562 * 21 20 18 23 23 C 1.50697 * 119.99774 * 179.72962 * 21 20 18 24 24 H 1.09004 * 109.52292 * 299.99408 * 23 21 20 25 25 C 1.53183 * 109.52010 * 179.87516 * 23 21 20 26 26 C 1.53183 * 109.03391 * 183.17502 * 25 23 21 27 27 C 1.53096 * 109.21175 * 56.88086 * 26 25 23 28 28 O 1.42904 * 109.41676 * 302.42409 * 27 26 25 29 29 C 1.42905 * 114.09522 * 61.16033 * 28 27 26 30 30 C 1.47439 * 111.00235 * 169.99727 * 13 12 10 31 31 H 0.96996 * 119.99953 * 0.02562 * 1 2 3 32 32 H 0.96994 * 120.00357 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.46965 * 59.99616 * 12 10 9 34 34 H 1.09007 * 109.46879 * 300.00157 * 12 10 9 35 35 H 1.09002 * 110.37493 * 265.19577 * 14 13 12 36 36 H 1.09000 * 110.37725 * 27.53356 * 14 13 12 37 37 H 0.96702 * 113.99914 * 292.24183 * 17 15 14 38 38 H 0.97005 * 120.00261 * 337.40816 * 20 18 15 39 39 H 1.09004 * 109.53715 * 302.97749 * 25 23 21 40 40 H 1.08997 * 109.54317 * 63.23917 * 25 23 21 41 41 H 1.09004 * 109.46957 * 296.98243 * 26 25 23 42 42 H 1.08992 * 109.57761 * 176.85308 * 26 25 23 43 43 H 1.09005 * 109.47426 * 182.44208 * 27 26 25 44 44 H 1.08999 * 109.48935 * 62.42178 * 27 26 25 45 45 H 1.08996 * 109.47883 * 178.85648 * 29 28 27 46 46 H 1.09004 * 109.47671 * 58.82436 * 29 28 27 47 47 H 1.08999 * 109.89004 * 117.33882 * 30 13 12 48 48 H 1.09008 * 109.88769 * 356.15194 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5607 -2.3706 0.0012 13 7 6.0505 -3.7556 0.0015 14 6 5.3768 -4.5559 -1.0432 15 6 6.4524 -5.5614 -1.5311 16 1 6.5253 -6.4125 -0.8540 17 8 6.1858 -5.9938 -2.8667 18 6 7.7375 -4.6940 -1.4739 19 1 7.8331 -4.0870 -2.3741 20 7 8.9226 -5.5354 -1.2903 21 6 10.1362 -5.0799 -1.6593 22 8 10.2472 -3.9732 -2.1429 23 6 11.3561 -5.9431 -1.4648 24 1 11.4733 -6.1749 -0.4062 25 6 12.5965 -5.1966 -1.9657 26 6 13.8171 -6.1130 -1.8365 27 6 13.5612 -7.4058 -2.6156 28 8 12.3773 -8.0334 -2.1190 29 6 11.1953 -7.2423 -2.2583 30 6 7.5048 -3.8019 -0.2364 31 1 -0.4850 0.8400 -0.0004 32 1 3.8649 -0.3634 0.0004 33 1 5.9234 -1.8571 0.8916 34 1 5.9248 -1.8563 -0.8884 35 1 4.5227 -5.0868 -0.6228 36 1 5.0590 -3.9155 -1.8660 37 1 5.3919 -6.5392 -2.9525 38 1 8.8338 -6.4204 -0.9032 39 1 12.4582 -4.9201 -3.0109 40 1 12.7483 -4.2987 -1.3666 41 1 13.9851 -6.3484 -0.7855 42 1 14.6953 -5.6109 -2.2421 43 1 14.4093 -8.0792 -2.4909 44 1 13.4337 -7.1739 -3.6730 45 1 10.3390 -7.7980 -1.8763 46 1 11.0367 -7.0081 -3.3110 47 1 8.0088 -4.2305 0.6298 48 1 7.8814 -2.7969 -0.4277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191677022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:17 Heat of formation + Delta-G solvation = -184.615327 kcal Electronic energy + Delta-G solvation = -30229.162555 eV Core-core repulsion = 25896.935769 eV Total energy + Delta-G solvation = -4332.226785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68585 -40.89462 -39.85410 -39.12686 -36.96680 -36.06888 -35.45659 -34.62041 -33.79986 -32.63052 -31.24346 -29.21875 -28.19151 -26.14466 -25.85128 -25.19713 -22.75751 -22.43853 -21.68703 -21.34643 -20.93067 -20.23046 -18.69337 -18.41447 -17.90540 -17.40955 -17.28325 -16.92963 -16.91717 -16.33422 -16.24940 -16.03394 -15.81975 -15.35467 -15.15665 -14.97787 -14.67870 -14.61510 -14.51035 -14.17502 -14.10253 -13.97883 -13.72000 -13.51606 -13.37990 -13.11322 -13.04776 -12.64001 -12.58935 -12.43556 -12.14820 -12.00383 -11.92697 -11.78340 -11.53315 -11.41577 -11.21061 -10.92145 -10.52869 -10.40039 -10.28182 -10.21861 -9.34340 -8.43653 -6.04147 1.28550 1.32718 1.41782 1.48812 1.89041 1.95261 2.20251 2.51727 2.86361 2.91124 3.12350 3.22140 3.48536 3.53062 3.67854 3.76089 3.83600 3.92882 3.97650 4.10151 4.13597 4.20347 4.24408 4.26908 4.32705 4.43569 4.44111 4.60094 4.61216 4.70639 4.79594 4.81475 4.85084 4.91807 5.04729 5.08749 5.11458 5.29490 5.36278 5.49374 5.73803 5.86083 5.95596 6.14374 6.43195 6.55600 6.72849 6.84725 7.13484 7.35384 7.90218 8.73456 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025462 B = 0.002060 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.393313 B =13591.202815 C =14307.452318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.960 3.040 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.233 1.233 7 C -0.326 4.326 8 H 0.060 0.940 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.602 6.602 12 C 0.044 3.956 13 N -0.511 5.511 14 C 0.033 3.967 15 C 0.098 3.902 16 H 0.104 0.896 17 O -0.570 6.570 18 C 0.138 3.862 19 H 0.077 0.923 20 N -0.701 5.701 21 C 0.522 3.478 22 O -0.577 6.577 23 C -0.134 4.134 24 H 0.127 0.873 25 C -0.105 4.105 26 C -0.149 4.149 27 C 0.050 3.950 28 O -0.389 6.389 29 C 0.074 3.926 30 C 0.038 3.962 31 H 0.279 0.721 32 H 0.388 0.612 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.028 0.972 37 H 0.400 0.600 38 H 0.418 0.582 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.052 0.948 45 H 0.117 0.883 46 H 0.049 0.951 47 H 0.103 0.897 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.866 -12.984 -2.895 32.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.212 4.212 3 Si 0.781 3.219 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.156 1.156 7 C -0.455 4.455 8 H 0.078 0.922 9 N -0.231 5.231 10 C 0.237 3.763 11 O -0.486 6.486 12 C -0.087 4.087 13 N -0.237 5.237 14 C -0.095 4.095 15 C 0.037 3.963 16 H 0.122 0.878 17 O -0.378 6.378 18 C 0.031 3.969 19 H 0.095 0.905 20 N -0.354 5.354 21 C 0.309 3.691 22 O -0.456 6.456 23 C -0.155 4.155 24 H 0.145 0.855 25 C -0.143 4.143 26 C -0.187 4.187 27 C -0.026 4.026 28 O -0.308 6.308 29 C -0.004 4.004 30 C -0.090 4.090 31 H 0.089 0.911 32 H 0.224 0.776 33 H 0.141 0.859 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.251 0.749 38 H 0.256 0.744 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.131 0.869 44 H 0.071 0.929 45 H 0.134 0.866 46 H 0.067 0.933 47 H 0.121 0.879 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 29.766 -12.863 -2.798 32.547 hybrid contribution -1.029 1.312 -0.679 1.801 sum 28.737 -11.551 -3.477 31.166 Atomic orbital electron populations 1.69788 1.07993 1.29227 1.50145 1.26064 0.96454 1.02561 0.96136 0.85424 0.79562 0.77120 0.79832 1.18413 1.19862 1.15615 1.18999 0.81237 0.95019 1.50257 0.92213 1.42034 1.05981 1.07503 1.67602 1.20695 0.90498 0.83573 0.81504 1.90515 1.71149 1.31982 1.54961 1.22192 0.90674 0.91612 1.04238 1.63413 1.03786 1.09665 1.46860 1.23581 0.97626 0.95937 0.92392 1.23201 0.92265 0.96263 0.84548 0.87792 1.86437 1.50830 1.73523 1.26995 1.21884 0.84279 0.92369 0.98394 0.90465 1.45788 1.05394 1.20233 1.63945 1.20944 0.84942 0.86969 0.76228 1.90712 1.86504 1.22876 1.45462 1.22017 0.92511 0.96222 1.04764 0.85487 1.21415 0.92994 0.98281 1.01596 1.22194 0.98012 0.96024 1.02441 1.22836 0.87790 0.95001 0.97012 1.87959 1.16426 1.42842 1.83539 1.22542 0.88979 0.90063 0.98795 1.23310 0.87787 1.00312 0.97621 0.91121 0.77632 0.85942 0.90866 0.89778 0.95323 0.74894 0.74383 0.92488 0.91361 0.90216 0.89082 0.86915 0.92918 0.86555 0.93271 0.87897 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.96 21.66 0.30 -55.56 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.96 39.08 27.74 68.60 1.90 40.98 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 7 C -0.33 -18.94 10.16 84.04 0.85 -18.08 16 8 H 0.06 4.10 7.39 -2.91 -0.02 4.08 16 9 N -0.59 -27.83 5.09 -306.98 -1.56 -29.40 16 10 C 0.45 20.11 7.31 87.66 0.64 20.75 16 11 O -0.60 -31.74 13.13 -3.08 -0.04 -31.78 16 12 C 0.04 1.40 5.31 85.56 0.45 1.86 16 13 N -0.51 -15.18 5.21 -889.66 -4.63 -19.81 16 14 C 0.03 1.03 4.69 86.85 0.41 1.44 16 15 C 0.10 2.14 4.05 32.05 0.13 2.27 16 16 H 0.10 1.74 8.01 -2.39 -0.02 1.72 16 17 O -0.57 -12.53 13.48 -148.98 -2.01 -14.54 16 18 C 0.14 3.06 3.00 46.17 0.14 3.19 16 19 H 0.08 2.19 7.62 -2.39 -0.02 2.17 16 20 N -0.70 -11.33 5.02 -436.94 -2.19 -13.52 16 21 C 0.52 10.02 7.16 87.65 0.63 10.65 16 22 O -0.58 -16.32 15.66 -3.04 -0.05 -16.37 16 23 C -0.13 -1.73 2.73 -11.45 -0.03 -1.77 16 24 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 25 C -0.10 -1.47 4.62 30.72 0.14 -1.33 16 26 C -0.15 -1.37 6.13 30.69 0.19 -1.18 16 27 C 0.05 0.49 6.84 72.01 0.49 0.98 16 28 O -0.39 -5.29 10.77 -148.98 -1.60 -6.90 16 29 C 0.07 0.87 6.00 72.01 0.43 1.30 16 30 C 0.04 0.88 6.63 86.65 0.57 1.45 16 31 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.39 15.41 5.76 -92.71 -0.53 14.87 16 33 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.07 2.08 7.96 -2.38 -0.02 2.06 16 35 H 0.08 3.09 6.71 -2.39 -0.02 3.07 16 36 H 0.03 1.03 7.54 -2.39 -0.02 1.01 16 37 H 0.40 5.90 9.12 -74.06 -0.68 5.22 16 38 H 0.42 4.07 8.01 -92.70 -0.74 3.33 16 39 H 0.06 0.98 8.03 -2.38 -0.02 0.96 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.12 0.93 7.64 -2.39 -0.02 0.91 16 46 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.10 2.02 8.03 -2.39 -0.02 2.00 16 48 H 0.07 1.56 7.49 -2.38 -0.02 1.55 16 Total: -1.00 -81.30 383.66 -5.37 -86.67 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: -1.00 Total: 38.95 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 5.52 Total: 21.28 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -8.09 Total: -118.29 kcal Atomic # 8 Polarization: -65.89 SS G_CDS: -3.70 Total: -69.59 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 1.90 Total: 40.98 kcal Total: -81.30 -5.37 -86.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191677022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.946 kcal (2) G-P(sol) polarization free energy of solvation -81.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds