Wall clock time and date at job start Sat Apr 11 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00163 * 2 1 4 4 H 1.48498 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46725 * 299.99472 * 3 2 1 6 6 H 1.48497 * 109.47358 * 59.99719 * 3 2 1 7 7 C 1.38955 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99841 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99631 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00141 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99786 * 180.02562 * 10 9 7 13 13 N 1.46909 * 109.46917 * 186.12630 * 12 10 9 14 14 C 1.47440 * 110.99517 * 176.64686 * 13 12 10 15 15 C 1.54319 * 107.23617 * 236.74437 * 14 13 12 16 16 H 1.08995 * 110.70242 * 96.27677 * 15 14 13 17 17 O 1.42895 * 110.70645 * 219.34000 * 15 14 13 18 18 C 1.55136 * 103.01758 * 337.72228 * 15 14 13 19 19 H 1.09006 * 110.99218 * 277.55836 * 18 15 14 20 20 N 1.46500 * 110.99031 * 153.74289 * 18 15 14 21 21 C 1.34777 * 119.99981 * 154.99901 * 20 18 15 22 22 O 1.21294 * 120.00067 * 359.97438 * 21 20 18 23 23 C 1.50692 * 120.00255 * 180.02562 * 21 20 18 24 24 H 1.09002 * 109.52520 * 60.12296 * 23 21 20 25 25 C 1.53184 * 109.52512 * 180.31589 * 23 21 20 26 26 C 1.53176 * 109.03669 * 176.88525 * 25 23 21 27 27 C 1.53092 * 109.16491 * 303.02085 * 26 25 23 28 28 O 1.42905 * 109.41657 * 57.60362 * 27 26 25 29 29 C 1.42892 * 114.09819 * 298.84597 * 28 27 26 30 30 C 1.47839 * 110.99521 * 55.81247 * 13 12 10 31 31 H 0.96997 * 119.99850 * 0.02562 * 1 2 3 32 32 H 0.96997 * 119.99969 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.47031 * 66.13181 * 12 10 9 34 34 H 1.08995 * 109.47246 * 306.12631 * 12 10 9 35 35 H 1.09010 * 109.88687 * 117.34011 * 14 13 12 36 36 H 1.08997 * 109.89301 * 356.15751 * 14 13 12 37 37 H 0.96707 * 114.00105 * 298.54558 * 17 15 14 38 38 H 0.96994 * 120.00227 * 335.00269 * 20 18 15 39 39 H 1.08999 * 109.54009 * 296.75148 * 25 23 21 40 40 H 1.08997 * 109.54581 * 57.01400 * 25 23 21 41 41 H 1.08999 * 109.52447 * 183.11171 * 26 25 23 42 42 H 1.09004 * 109.57377 * 62.95105 * 26 25 23 43 43 H 1.09007 * 109.47689 * 297.62404 * 27 26 25 44 44 H 1.09000 * 109.49499 * 177.60022 * 27 26 25 45 45 H 1.08998 * 109.48524 * 301.17339 * 29 28 27 46 46 H 1.09000 * 109.49157 * 181.14436 * 29 28 27 47 47 H 1.09006 * 110.37226 * 265.18580 * 30 13 12 48 48 H 1.09003 * 110.38024 * 27.42204 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8895 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0000 13 7 2.1914 -5.9756 0.1479 14 6 1.4826 -7.2657 0.2317 15 6 1.9109 -7.9378 1.5531 16 1 1.1833 -7.7391 2.3400 17 8 2.0845 -9.3445 1.3714 18 6 3.2670 -7.2541 1.8694 19 1 4.0801 -7.7250 1.3168 20 7 3.5377 -7.2663 3.3092 21 6 4.8074 -7.2032 3.7567 22 8 5.7261 -7.1367 2.9674 23 6 5.0860 -7.2164 5.2376 24 1 4.7015 -8.1391 5.6724 25 6 6.5967 -7.1275 5.4752 26 6 6.8624 -7.0632 6.9824 27 6 6.1099 -5.8690 7.5749 28 8 4.7151 -5.9983 7.2916 29 6 4.4021 -6.0161 5.8975 30 6 3.0154 -5.8114 1.3643 31 1 -0.4850 0.8400 -0.0004 32 1 0.3534 -2.3906 -0.0002 33 1 0.7022 -4.9694 -0.9401 34 1 0.5370 -4.8748 0.8297 35 1 1.7605 -7.8970 -0.6125 36 1 0.4056 -7.0978 0.2330 37 1 1.2811 -9.8079 1.0974 38 1 2.8032 -7.3199 3.9403 39 1 7.0840 -8.0079 5.0562 40 1 6.9888 -6.2300 4.9971 41 1 7.9314 -6.9442 7.1590 42 1 6.5154 -7.9827 7.4539 43 1 6.4865 -4.9464 7.1329 44 1 6.2608 -5.8430 8.6541 45 1 4.7563 -5.0956 5.4336 46 1 3.3228 -6.0964 5.7681 47 1 3.9597 -5.3247 1.1202 48 1 2.4744 -5.2341 2.1142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191677023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:21 Heat of formation + Delta-G solvation = -160.133413 kcal Electronic energy + Delta-G solvation = -30661.502069 eV Core-core repulsion = 26330.336899 eV Total energy + Delta-G solvation = -4331.165170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.66383 -39.64862 -38.55023 -37.84190 -35.86673 -34.54282 -33.86950 -33.83974 -31.86212 -31.28488 -29.99032 -28.14848 -26.51803 -25.28518 -24.70771 -24.12192 -21.73392 -21.30745 -20.87539 -20.08094 -19.25891 -17.95250 -17.76364 -17.38920 -16.57951 -16.52233 -16.15436 -16.10068 -15.31218 -15.08638 -14.94467 -14.69952 -14.40930 -14.28414 -14.06735 -13.90067 -13.59967 -13.37758 -13.31906 -13.01382 -12.94621 -12.78991 -12.34210 -11.95172 -11.91621 -11.74771 -11.54091 -11.41757 -11.30591 -11.24086 -11.04153 -10.77055 -10.68814 -10.46731 -10.35239 -10.24652 -10.01229 -9.70609 -9.53931 -9.19190 -8.45370 -8.03153 -7.94104 -6.44780 -3.85425 2.50144 2.88689 3.14544 3.25607 3.33079 3.53294 3.78046 3.86216 4.02899 4.23752 4.28787 4.39299 4.50694 4.57486 4.64001 4.68147 4.77912 4.82426 4.95865 5.02601 5.07487 5.19986 5.26559 5.28110 5.35267 5.40364 5.44165 5.47125 5.55639 5.64678 5.66129 5.82067 5.82198 5.91130 5.99393 6.02902 6.21916 6.31601 6.50806 6.81797 7.09887 7.15114 7.33028 7.35591 7.53102 8.03184 8.10500 8.58167 9.15382 9.50477 10.02085 10.72997 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008911 B = 0.003101 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.470598 B = 9026.659417 C =11394.961287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.575 6.575 12 C 0.040 3.960 13 N -0.499 5.499 14 C 0.012 3.988 15 C 0.075 3.925 16 H 0.067 0.933 17 O -0.555 6.555 18 C 0.140 3.860 19 H 0.114 0.886 20 N -0.718 5.718 21 C 0.522 3.478 22 O -0.526 6.526 23 C -0.141 4.141 24 H 0.105 0.895 25 C -0.104 4.104 26 C -0.155 4.155 27 C 0.055 3.945 28 O -0.377 6.377 29 C 0.070 3.930 30 C 0.050 3.950 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.379 0.621 38 H 0.398 0.602 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.098 0.902 47 H 0.110 0.890 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.937 -17.408 12.524 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.459 6.459 12 C -0.092 4.092 13 N -0.225 5.225 14 C -0.117 4.117 15 C 0.014 3.986 16 H 0.085 0.915 17 O -0.359 6.359 18 C 0.035 3.965 19 H 0.132 0.868 20 N -0.370 5.370 21 C 0.307 3.693 22 O -0.401 6.401 23 C -0.163 4.163 24 H 0.123 0.877 25 C -0.142 4.142 26 C -0.193 4.193 27 C -0.021 4.021 28 O -0.295 6.295 29 C -0.007 4.007 30 C -0.079 4.079 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.226 0.774 38 H 0.233 0.767 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.113 0.887 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.128 0.872 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.102 -17.052 11.823 21.151 hybrid contribution -1.773 0.740 0.509 1.987 sum 2.330 -16.312 12.332 20.581 Atomic orbital electron populations 1.69617 1.05944 1.28080 1.50691 1.25260 0.95631 0.99728 0.97295 0.85809 0.79776 0.81117 0.77726 1.19174 1.20704 1.20758 1.19757 0.93408 0.82148 1.47432 0.87831 1.41860 1.09150 1.04581 1.64403 1.19700 0.88450 0.84555 0.84816 1.90535 1.13554 1.86844 1.54984 1.22177 0.93871 0.91281 1.01824 1.63298 1.20956 1.00100 1.38121 1.23604 0.97926 0.92581 0.97614 1.23308 0.96816 0.81629 0.96809 0.91504 1.86576 1.39126 1.18865 1.91362 1.22195 0.97118 0.96060 0.81155 0.86788 1.45842 1.08076 1.75548 1.07508 1.20408 0.82604 0.75737 0.90503 1.90749 1.43826 1.48135 1.57406 1.22016 0.99440 1.02192 0.92672 0.87664 1.21424 0.92990 1.04214 0.95548 1.22222 1.01271 0.99801 0.96006 1.22666 0.81360 0.97172 1.00938 1.87953 1.24264 1.94274 1.23028 1.22527 1.00088 0.96130 0.81974 1.23399 1.00776 0.93853 0.89826 0.91914 0.77526 0.88911 0.93475 0.89172 0.91946 0.77389 0.76727 0.90590 0.90597 0.90356 0.90976 0.92750 0.88657 0.91983 0.88411 0.87178 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 2 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C 0.44 10.23 7.34 -10.99 -0.08 10.15 16 11 O -0.58 -15.46 13.89 5.54 0.08 -15.39 16 12 C 0.04 0.69 5.07 -4.97 -0.03 0.67 16 13 N -0.50 -8.19 5.07 -232.68 -1.18 -9.37 16 14 C 0.01 0.14 6.67 -2.84 -0.02 0.12 16 15 C 0.08 0.80 3.97 -24.91 -0.10 0.70 16 16 H 0.07 0.59 8.01 -51.93 -0.42 0.17 16 17 O -0.55 -5.55 13.39 -35.23 -0.47 -6.02 16 18 C 0.14 1.92 3.14 -65.79 -0.21 1.72 16 19 H 0.11 1.87 7.54 -51.93 -0.39 1.48 16 20 N -0.72 -8.25 5.10 -51.74 -0.26 -8.51 16 21 C 0.52 6.81 7.16 -10.99 -0.08 6.74 16 22 O -0.53 -9.15 15.61 5.54 0.09 -9.07 16 23 C -0.14 -1.40 2.73 -91.63 -0.25 -1.65 16 24 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 25 C -0.10 -1.03 4.62 -26.55 -0.12 -1.15 16 26 C -0.16 -1.18 6.14 -26.59 -0.16 -1.35 16 27 C 0.06 0.45 6.84 37.21 0.25 0.71 16 28 O -0.38 -3.89 10.77 -35.23 -0.38 -4.27 16 29 C 0.07 0.68 6.00 37.21 0.22 0.91 16 30 C 0.05 0.84 4.97 -2.30 -0.01 0.83 16 31 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.05 0.72 8.13 -51.93 -0.42 0.29 16 35 H 0.09 1.04 8.06 -51.92 -0.42 0.62 16 36 H 0.06 0.61 7.58 -51.93 -0.39 0.22 16 37 H 0.38 2.00 9.11 45.56 0.42 2.42 16 38 H 0.40 3.35 8.04 -40.82 -0.33 3.02 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.86 8.03 -51.93 -0.42 0.45 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.79 7.64 -51.93 -0.40 0.39 16 47 H 0.11 2.33 6.94 -51.93 -0.36 1.97 16 48 H 0.05 0.80 7.73 -51.93 -0.40 0.40 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -35.06 388.16 -8.20 -43.26 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -6.75 Total: 14.72 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -0.82 Total: 10.49 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.78 Total: -55.56 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.69 Total: -34.74 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.06 -8.20 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191677023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.870 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds