Wall clock time and date at job start Sat Apr 11 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 119.99638 * 2 1 4 4 H 1.48504 * 109.46798 * 240.27537 * 3 2 1 5 5 H 1.48499 * 109.47322 * 0.26861 * 3 2 1 6 6 H 1.48497 * 109.47377 * 120.27390 * 3 2 1 7 7 C 1.38948 * 120.00021 * 180.27289 * 2 1 3 8 8 H 1.07993 * 119.99932 * 179.72679 * 7 2 1 9 9 N 1.37106 * 120.00159 * 359.72264 * 7 2 1 10 10 C 1.34774 * 120.00003 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00033 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00090 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47309 * 186.13861 * 12 10 9 14 14 C 1.47904 * 111.00110 * 176.64013 * 13 12 10 15 15 C 1.53993 * 107.05697 * 214.15727 * 14 13 12 16 16 H 1.08998 * 110.30689 * 120.13961 * 15 14 13 17 17 O 1.42900 * 110.30917 * 242.30754 * 15 14 13 18 18 C 1.54601 * 105.14209 * 1.22162 * 15 14 13 19 19 H 1.08994 * 110.72173 * 263.42477 * 18 15 14 20 20 N 1.46499 * 110.72041 * 140.31635 * 18 15 14 21 21 C 1.34778 * 119.99914 * 155.00441 * 20 18 15 22 22 O 1.21283 * 119.99709 * 0.02562 * 21 20 18 23 23 C 1.50693 * 120.00240 * 179.97438 * 21 20 18 24 24 C 1.53003 * 109.47125 * 179.97438 * 23 21 20 25 25 H 1.08998 * 110.45884 * 54.29923 * 24 23 21 26 26 C 1.54509 * 110.50931 * 176.90742 * 24 23 21 27 27 C 1.54483 * 104.06413 * 118.64704 * 26 24 23 28 28 O 1.44423 * 104.80368 * 23.97408 * 27 26 24 29 29 C 1.44651 * 105.36956 * 319.56883 * 28 27 26 30 30 C 1.48533 * 110.99876 * 59.24246 * 13 12 10 31 31 H 0.96998 * 120.00649 * 359.72991 * 1 2 3 32 32 H 0.96997 * 119.99454 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.47202 * 306.13936 * 12 10 9 34 34 H 1.09007 * 109.46914 * 66.13687 * 12 10 9 35 35 H 1.09003 * 109.91538 * 333.50957 * 14 13 12 36 36 H 1.08992 * 109.91744 * 94.60499 * 14 13 12 37 37 H 0.96705 * 113.99739 * 298.54905 * 17 15 14 38 38 H 0.97001 * 120.00696 * 334.99733 * 20 18 15 39 39 H 1.08996 * 109.47401 * 300.00168 * 23 21 20 40 40 H 1.09003 * 109.47074 * 59.99814 * 23 21 20 41 41 H 1.09000 * 110.50957 * 237.28803 * 26 24 23 42 42 H 1.09000 * 110.51711 * 359.85852 * 26 24 23 43 43 H 1.08995 * 110.37179 * 142.80847 * 27 26 24 44 44 H 1.09006 * 110.36907 * 265.03408 * 27 26 24 45 45 H 1.08995 * 110.33670 * 281.59309 * 29 28 27 46 46 H 1.08996 * 110.50497 * 159.18328 * 29 28 27 47 47 H 1.09000 * 110.67115 * 278.15328 * 30 13 12 48 48 H 1.09006 * 110.66911 * 41.28624 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.0968 1.6993 -1.2159 5 1 1.2831 2.7465 0.0066 6 1 3.1068 1.6937 1.2091 7 6 2.0089 -1.2033 -0.0057 8 1 3.0888 -1.2033 -0.0102 9 7 1.3234 -2.3907 -0.0056 10 6 1.9973 -3.5579 -0.0117 11 8 3.2103 -3.5578 -0.0168 12 6 1.2439 -4.8630 -0.0122 13 7 2.1923 -5.9759 0.1288 14 6 1.4817 -7.2703 0.2129 15 6 2.2956 -8.1717 1.1598 16 1 1.6875 -8.4698 2.0139 17 8 2.7704 -9.3243 0.4612 18 6 3.4839 -7.2993 1.6256 19 1 4.3690 -7.4991 1.0217 20 7 3.7660 -7.5232 3.0457 21 6 5.0008 -7.2890 3.5325 22 8 5.8782 -6.8926 2.7950 23 6 5.2909 -7.5187 4.9933 24 6 6.7549 -7.1808 5.2818 25 1 6.9858 -6.1697 4.9463 26 6 7.0590 -7.3339 6.7889 27 6 8.1427 -8.4335 6.8434 28 8 8.7710 -8.3971 5.5435 29 6 7.6909 -8.2039 4.6009 30 6 2.9684 -5.8573 1.3896 31 1 -0.4851 0.8400 0.0040 32 1 0.3535 -2.3907 -0.0019 33 1 0.5408 -4.8770 0.8207 34 1 0.6983 -4.9671 -0.9501 35 1 0.4798 -7.1185 0.6147 36 1 1.4201 -7.7251 -0.7757 37 1 2.0678 -9.8869 0.1075 38 1 3.0641 -7.8398 3.6356 39 1 4.6447 -6.8812 5.5967 40 1 5.1039 -8.5637 5.2409 41 1 7.4425 -6.3992 7.1980 42 1 6.1658 -7.6479 7.3289 43 1 8.8708 -8.2103 7.6232 44 1 7.6863 -9.4077 7.0190 45 1 7.1654 -9.1433 4.4292 46 1 8.0713 -7.8035 3.6612 47 1 3.8022 -5.1665 1.2647 48 1 2.3241 -5.5400 2.2097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191951820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:26 Heat of formation + Delta-G solvation = -155.337339 kcal Electronic energy + Delta-G solvation = -30144.094434 eV Core-core repulsion = 25813.137237 eV Total energy + Delta-G solvation = -4330.957197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.50392 -39.66153 -38.71887 -37.86285 -35.81756 -34.51258 -33.84883 -33.74694 -31.31291 -30.54047 -29.85650 -28.30431 -27.13882 -26.16524 -24.23195 -23.18509 -21.71192 -21.26751 -20.83090 -20.24588 -19.23121 -17.91762 -17.72321 -17.30017 -16.52418 -16.37331 -16.08110 -15.88991 -15.76252 -15.14814 -14.99799 -14.65864 -14.55841 -14.26967 -13.95930 -13.74073 -13.68286 -13.32673 -13.08719 -13.03058 -12.87850 -12.53668 -12.25135 -11.90131 -11.87040 -11.75302 -11.52410 -11.50829 -11.31224 -11.12873 -10.99448 -10.88383 -10.70864 -10.45301 -10.37809 -10.21859 -10.00398 -9.87706 -9.49626 -9.17969 -8.48285 -8.08653 -7.95609 -6.43283 -3.84024 2.54599 2.89114 3.19763 3.25355 3.30294 3.75599 3.87143 3.90824 3.99110 4.19512 4.25228 4.41514 4.51918 4.56912 4.62926 4.74187 4.78010 4.81306 5.02720 5.03554 5.08241 5.19655 5.21903 5.30488 5.33684 5.36012 5.42396 5.46371 5.51845 5.65093 5.65885 5.78224 5.80795 5.86329 5.99690 6.03898 6.22661 6.30319 6.49327 6.57373 7.03168 7.12167 7.33774 7.41062 7.54150 8.04282 8.13079 8.59735 9.16617 9.51779 10.03749 10.74361 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010139 B = 0.002590 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.050613 B =10808.015125 C =13018.358148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.574 6.574 12 C 0.037 3.963 13 N -0.486 5.486 14 C 0.004 3.996 15 C 0.090 3.910 16 H 0.065 0.935 17 O -0.554 6.554 18 C 0.147 3.853 19 H 0.116 0.884 20 N -0.723 5.723 21 C 0.511 3.489 22 O -0.524 6.524 23 C -0.132 4.132 24 C -0.107 4.107 25 H 0.095 0.905 26 C -0.152 4.152 27 C 0.043 3.957 28 O -0.378 6.378 29 C 0.054 3.946 30 C 0.035 3.965 31 H 0.272 0.728 32 H 0.392 0.608 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.378 0.622 38 H 0.397 0.603 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.103 0.897 47 H 0.118 0.882 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 -20.342 12.770 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.458 6.458 12 C -0.094 4.094 13 N -0.211 5.211 14 C -0.125 4.125 15 C 0.030 3.970 16 H 0.082 0.918 17 O -0.360 6.360 18 C 0.041 3.959 19 H 0.134 0.866 20 N -0.375 5.375 21 C 0.298 3.702 22 O -0.399 6.399 23 C -0.172 4.172 24 C -0.126 4.126 25 H 0.114 0.886 26 C -0.190 4.190 27 C -0.034 4.034 28 O -0.297 6.297 29 C -0.022 4.022 30 C -0.094 4.094 31 H 0.082 0.918 32 H 0.225 0.775 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.226 0.774 38 H 0.231 0.769 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.121 0.879 47 H 0.136 0.864 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.940 -19.624 11.871 23.271 hybrid contribution -2.344 0.550 0.855 2.555 sum 1.596 -19.074 12.727 22.985 Atomic orbital electron populations 1.69602 1.05935 1.28278 1.50612 1.25259 0.95637 0.99727 0.97282 0.85916 0.78764 0.80398 0.79161 1.19823 1.20979 1.19892 1.19662 0.93371 0.82166 1.47607 0.87921 1.41847 1.09137 1.04559 1.64431 1.19676 0.88440 0.84521 0.84825 1.90526 1.13550 1.86805 1.54912 1.22121 0.93946 0.91448 1.01921 1.64492 1.21681 0.99913 1.34981 1.23687 0.96154 0.92115 1.00583 1.22867 0.94633 0.86037 0.93465 0.91763 1.86605 1.37292 1.37011 1.75053 1.21886 0.98956 0.93555 0.81483 0.86600 1.45924 1.12374 1.69144 1.10101 1.20650 0.82081 0.77134 0.90377 1.90764 1.45089 1.44192 1.59895 1.21773 0.98074 1.03874 0.93501 1.22309 0.93357 1.02203 0.94776 0.88616 1.23032 0.99643 1.00337 0.96012 1.23387 0.95340 0.97717 0.86915 1.89175 1.30406 1.94089 1.16048 1.23560 0.87831 0.97037 0.93774 1.23704 0.99793 0.96015 0.89861 0.91826 0.77526 0.93404 0.88901 0.93100 0.89194 0.77446 0.76897 0.88305 0.88754 0.90292 0.90306 0.89256 0.92482 0.92650 0.87892 0.86407 0.94012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.23 5.29 -10.96 -0.06 -14.28 16 10 C 0.44 10.40 7.41 -10.99 -0.08 10.32 16 11 O -0.57 -15.69 13.87 5.54 0.08 -15.61 16 12 C 0.04 0.66 5.30 -4.98 -0.03 0.63 16 13 N -0.49 -8.10 5.11 -231.89 -1.18 -9.28 16 14 C 0.00 0.04 6.50 -2.75 -0.02 0.02 16 15 C 0.09 0.95 4.10 -25.37 -0.10 0.84 16 16 H 0.06 0.50 7.75 -51.93 -0.40 0.10 16 17 O -0.55 -5.78 13.26 -35.23 -0.47 -6.25 16 18 C 0.15 2.00 3.17 -66.06 -0.21 1.79 16 19 H 0.12 1.97 7.49 -51.93 -0.39 1.59 16 20 N -0.72 -7.71 5.18 -52.00 -0.27 -7.97 16 21 C 0.51 6.18 7.63 -10.99 -0.08 6.10 16 22 O -0.52 -8.76 14.56 5.55 0.08 -8.68 16 23 C -0.13 -1.04 4.91 -27.88 -0.14 -1.18 16 24 C -0.11 -1.02 2.71 -89.05 -0.24 -1.26 16 25 H 0.10 1.10 7.96 -51.93 -0.41 0.69 16 26 C -0.15 -1.09 6.74 -25.16 -0.17 -1.26 16 27 C 0.04 0.34 7.64 37.94 0.29 0.63 16 28 O -0.38 -4.46 11.65 -35.23 -0.41 -4.87 16 29 C 0.05 0.60 6.31 37.93 0.24 0.84 16 30 C 0.03 0.59 5.27 -1.90 -0.01 0.58 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 33 H 0.05 0.74 7.98 -51.93 -0.41 0.33 16 34 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 36 H 0.09 0.99 7.97 -51.93 -0.41 0.57 16 37 H 0.38 2.09 9.11 45.56 0.41 2.51 16 38 H 0.40 2.80 8.39 -40.82 -0.34 2.45 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.53 8.01 -51.93 -0.42 0.11 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.40 7.73 -51.93 -0.40 0.00 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.55 7.78 -51.93 -0.40 0.15 16 46 H 0.10 1.32 7.71 -51.93 -0.40 0.92 16 47 H 0.12 2.54 6.43 -51.93 -0.33 2.21 16 48 H 0.04 0.66 8.01 -51.93 -0.42 0.25 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -36.08 389.79 -8.13 -44.21 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -6.68 Total: 14.38 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -0.79 Total: 10.08 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.79 Total: -55.28 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.72 Total: -35.41 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.08 -8.13 -44.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191951820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.129 kcal (2) G-P(sol) polarization free energy of solvation -36.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds