Wall clock time and date at job start Sat Apr 11 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 119.99638 * 2 1 4 4 H 1.48504 * 109.46798 * 240.27537 * 3 2 1 5 5 H 1.48499 * 109.47322 * 0.26861 * 3 2 1 6 6 H 1.48497 * 109.47377 * 120.27390 * 3 2 1 7 7 C 1.38948 * 120.00021 * 180.27289 * 2 1 3 8 8 H 1.07993 * 119.99932 * 179.72679 * 7 2 1 9 9 N 1.37106 * 120.00159 * 359.72264 * 7 2 1 10 10 C 1.34774 * 120.00003 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00033 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00090 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47309 * 186.13861 * 12 10 9 14 14 C 1.47904 * 111.00110 * 176.64013 * 13 12 10 15 15 C 1.53993 * 107.05697 * 214.15727 * 14 13 12 16 16 H 1.08998 * 110.30689 * 120.13961 * 15 14 13 17 17 O 1.42900 * 110.30917 * 242.30754 * 15 14 13 18 18 C 1.54601 * 105.14209 * 1.22162 * 15 14 13 19 19 H 1.08994 * 110.72173 * 263.42477 * 18 15 14 20 20 N 1.46499 * 110.72041 * 140.31635 * 18 15 14 21 21 C 1.34778 * 119.99914 * 155.00441 * 20 18 15 22 22 O 1.21283 * 119.99709 * 0.02562 * 21 20 18 23 23 C 1.50693 * 120.00240 * 179.97438 * 21 20 18 24 24 C 1.53003 * 109.47125 * 179.97438 * 23 21 20 25 25 H 1.08998 * 110.45884 * 54.29923 * 24 23 21 26 26 C 1.54509 * 110.50931 * 176.90742 * 24 23 21 27 27 C 1.54483 * 104.06413 * 118.64704 * 26 24 23 28 28 O 1.44423 * 104.80368 * 23.97408 * 27 26 24 29 29 C 1.44651 * 105.36956 * 319.56883 * 28 27 26 30 30 C 1.48533 * 110.99876 * 59.24246 * 13 12 10 31 31 H 0.96998 * 120.00649 * 359.72991 * 1 2 3 32 32 H 0.96997 * 119.99454 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.47202 * 306.13936 * 12 10 9 34 34 H 1.09007 * 109.46914 * 66.13687 * 12 10 9 35 35 H 1.09003 * 109.91538 * 333.50957 * 14 13 12 36 36 H 1.08992 * 109.91744 * 94.60499 * 14 13 12 37 37 H 0.96705 * 113.99739 * 298.54905 * 17 15 14 38 38 H 0.97001 * 120.00696 * 334.99733 * 20 18 15 39 39 H 1.08996 * 109.47401 * 300.00168 * 23 21 20 40 40 H 1.09003 * 109.47074 * 59.99814 * 23 21 20 41 41 H 1.09000 * 110.50957 * 237.28803 * 26 24 23 42 42 H 1.09000 * 110.51711 * 359.85852 * 26 24 23 43 43 H 1.08995 * 110.37179 * 142.80847 * 27 26 24 44 44 H 1.09006 * 110.36907 * 265.03408 * 27 26 24 45 45 H 1.08995 * 110.33670 * 281.59309 * 29 28 27 46 46 H 1.08996 * 110.50497 * 159.18328 * 29 28 27 47 47 H 1.09000 * 110.67115 * 278.15328 * 30 13 12 48 48 H 1.09006 * 110.66911 * 41.28624 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.0968 1.6993 -1.2159 5 1 1.2831 2.7465 0.0066 6 1 3.1068 1.6937 1.2091 7 6 2.0089 -1.2033 -0.0057 8 1 3.0888 -1.2033 -0.0102 9 7 1.3234 -2.3907 -0.0056 10 6 1.9973 -3.5579 -0.0117 11 8 3.2103 -3.5578 -0.0168 12 6 1.2439 -4.8630 -0.0122 13 7 2.1923 -5.9759 0.1288 14 6 1.4817 -7.2703 0.2129 15 6 2.2956 -8.1717 1.1598 16 1 1.6875 -8.4698 2.0139 17 8 2.7704 -9.3243 0.4612 18 6 3.4839 -7.2993 1.6256 19 1 4.3690 -7.4991 1.0217 20 7 3.7660 -7.5232 3.0457 21 6 5.0008 -7.2890 3.5325 22 8 5.8782 -6.8926 2.7950 23 6 5.2909 -7.5187 4.9933 24 6 6.7549 -7.1808 5.2818 25 1 6.9858 -6.1697 4.9463 26 6 7.0590 -7.3339 6.7889 27 6 8.1427 -8.4335 6.8434 28 8 8.7710 -8.3971 5.5435 29 6 7.6909 -8.2039 4.6009 30 6 2.9684 -5.8573 1.3896 31 1 -0.4851 0.8400 0.0040 32 1 0.3535 -2.3907 -0.0019 33 1 0.5408 -4.8770 0.8207 34 1 0.6983 -4.9671 -0.9501 35 1 0.4798 -7.1185 0.6147 36 1 1.4201 -7.7251 -0.7757 37 1 2.0678 -9.8869 0.1075 38 1 3.0641 -7.8398 3.6356 39 1 4.6447 -6.8812 5.5967 40 1 5.1039 -8.5637 5.2409 41 1 7.4425 -6.3992 7.1980 42 1 6.1658 -7.6479 7.3289 43 1 8.8708 -8.2103 7.6232 44 1 7.6863 -9.4077 7.0190 45 1 7.1654 -9.1433 4.4292 46 1 8.0713 -7.8035 3.6612 47 1 3.8022 -5.1665 1.2647 48 1 2.3241 -5.5400 2.2097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191951820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:25 Heat of formation + Delta-G solvation = -189.460074 kcal Electronic energy + Delta-G solvation = -30145.574107 eV Core-core repulsion = 25813.137237 eV Total energy + Delta-G solvation = -4332.436869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49151 -40.71900 -39.94230 -39.25394 -36.87213 -35.94917 -35.48857 -34.54442 -33.32685 -31.64227 -30.65101 -29.32639 -28.29361 -27.46330 -25.92598 -23.91675 -22.87464 -22.15927 -21.83646 -21.07340 -21.00327 -19.91300 -18.62614 -18.16967 -17.82797 -17.49059 -17.14010 -16.70975 -16.70153 -16.57002 -16.31068 -15.92941 -15.85669 -15.65822 -15.37961 -14.79713 -14.69467 -14.49096 -14.38306 -14.23088 -13.75704 -13.60518 -13.44379 -13.28699 -13.09464 -13.03192 -12.88208 -12.56403 -12.50610 -12.46431 -12.15533 -12.14680 -11.91053 -11.77947 -11.54746 -11.50604 -11.19182 -10.85458 -10.77055 -10.33837 -10.17699 -10.02824 -9.37689 -8.49460 -5.97912 1.36687 1.38952 1.49584 1.61312 1.99227 2.02102 2.26477 2.80445 3.04279 3.10272 3.17387 3.31825 3.51478 3.56441 3.71371 3.76969 3.85380 3.95584 4.04195 4.16860 4.21358 4.24702 4.31369 4.37226 4.40116 4.46188 4.49252 4.56331 4.62516 4.73901 4.83340 4.86642 4.89970 4.92611 4.93116 5.04231 5.14137 5.23306 5.36896 5.38349 5.75404 5.85332 5.89191 6.05714 6.51440 6.58241 6.90679 7.10638 7.26897 7.53032 8.10370 8.67636 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010139 B = 0.002590 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.050613 B =10808.015125 C =13018.358148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.990 3.010 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.334 4.334 8 H 0.074 0.926 9 N -0.571 5.571 10 C 0.434 3.566 11 O -0.619 6.619 12 C 0.051 3.949 13 N -0.517 5.517 14 C 0.004 3.996 15 C 0.106 3.894 16 H 0.110 0.890 17 O -0.573 6.573 18 C 0.151 3.849 19 H 0.071 0.929 20 N -0.707 5.707 21 C 0.501 3.499 22 O -0.583 6.583 23 C -0.119 4.119 24 C -0.109 4.109 25 H 0.062 0.938 26 C -0.142 4.142 27 C 0.035 3.965 28 O -0.409 6.409 29 C 0.055 3.945 30 C 0.042 3.958 31 H 0.279 0.721 32 H 0.397 0.603 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.402 0.598 38 H 0.420 0.580 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.054 0.946 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -22.287 14.907 26.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.813 3.187 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.092 0.908 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.505 6.505 12 C -0.080 4.080 13 N -0.242 5.242 14 C -0.123 4.123 15 C 0.046 3.954 16 H 0.127 0.873 17 O -0.382 6.382 18 C 0.044 3.956 19 H 0.089 0.911 20 N -0.361 5.361 21 C 0.290 3.710 22 O -0.462 6.462 23 C -0.158 4.158 24 C -0.129 4.129 25 H 0.081 0.919 26 C -0.180 4.180 27 C -0.041 4.041 28 O -0.329 6.329 29 C -0.022 4.022 30 C -0.088 4.088 31 H 0.088 0.912 32 H 0.231 0.769 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.253 0.747 38 H 0.258 0.742 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.956 -21.617 14.031 25.789 hybrid contribution -1.384 1.102 0.146 1.775 sum -0.428 -20.515 14.177 24.941 Atomic orbital electron populations 1.69649 1.06641 1.29399 1.50156 1.25980 0.96564 1.02195 0.96239 0.85044 0.77855 0.76922 0.78855 1.19986 1.19078 1.19843 1.19567 0.92526 0.84132 1.50138 0.90825 1.41895 1.09288 1.04559 1.65143 1.20855 0.88301 0.86180 0.82467 1.90521 1.15999 1.87812 1.56176 1.22001 0.93540 0.88186 1.04269 1.64359 1.22864 1.01743 1.35267 1.23835 0.97253 0.89340 1.01917 1.22748 0.92609 0.85499 0.94502 0.87297 1.86563 1.39115 1.37148 1.75370 1.21510 0.98569 0.92743 0.82794 0.91088 1.45759 1.12765 1.68323 1.09221 1.21574 0.81687 0.75805 0.91975 1.90757 1.46969 1.46795 1.61722 1.21817 0.97109 1.06690 0.90228 1.22257 0.94286 0.99866 0.96479 0.91938 1.23013 1.00744 1.00204 0.94033 1.23669 0.95948 0.99091 0.85353 1.89137 1.31578 1.94303 1.17860 1.23471 0.88075 0.97892 0.92769 1.23379 0.98079 0.96840 0.90455 0.91194 0.76855 0.90379 0.86658 0.89852 0.88309 0.74699 0.74175 0.85425 0.85037 0.90438 0.86985 0.88118 0.90445 0.91399 0.91390 0.92733 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 8 H 0.07 4.61 7.16 -2.91 -0.02 4.59 16 9 N -0.57 -29.61 5.29 -306.99 -1.62 -31.23 16 10 C 0.43 21.17 7.41 87.66 0.65 21.82 16 11 O -0.62 -36.00 13.87 -3.08 -0.04 -36.04 16 12 C 0.05 1.74 5.30 85.56 0.45 2.19 16 13 N -0.52 -16.93 5.11 -887.56 -4.53 -21.46 16 14 C 0.00 0.09 6.50 86.45 0.56 0.65 16 15 C 0.11 1.89 4.10 31.47 0.13 2.02 16 16 H 0.11 1.05 7.75 -2.39 -0.02 1.03 16 17 O -0.57 -10.36 13.26 -148.98 -1.98 -12.33 16 18 C 0.15 4.11 3.17 46.20 0.15 4.26 16 19 H 0.07 2.60 7.49 -2.39 -0.02 2.59 16 20 N -0.71 -14.15 5.18 -436.83 -2.26 -16.41 16 21 C 0.50 12.20 7.63 87.65 0.67 12.87 16 22 O -0.58 -21.32 14.56 -3.04 -0.04 -21.36 16 23 C -0.12 -1.62 4.91 29.85 0.15 -1.47 16 24 C -0.11 -2.07 2.71 -9.78 -0.03 -2.09 16 25 H 0.06 1.58 7.96 -2.39 -0.02 1.56 16 26 C -0.14 -1.73 6.74 31.61 0.21 -1.52 16 27 C 0.04 0.50 7.64 72.49 0.55 1.05 16 28 O -0.41 -9.82 11.65 -148.98 -1.74 -11.55 16 29 C 0.05 1.26 6.31 72.49 0.46 1.72 16 30 C 0.04 1.44 5.27 86.65 0.46 1.90 16 31 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 33 H 0.08 2.20 7.98 -2.38 -0.02 2.18 16 34 H 0.12 3.42 8.14 -2.38 -0.02 3.40 16 35 H 0.08 1.20 7.68 -2.39 -0.02 1.18 16 36 H 0.10 1.83 7.97 -2.39 -0.02 1.81 16 37 H 0.40 2.92 9.11 -74.05 -0.67 2.24 16 38 H 0.42 4.37 8.39 -92.71 -0.78 3.60 16 39 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.13 0.89 8.01 -2.39 -0.02 0.87 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.11 0.64 7.73 -2.39 -0.02 0.62 16 43 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.07 1.35 7.78 -2.39 -0.02 1.33 16 46 H 0.07 2.00 7.71 -2.39 -0.02 1.98 16 47 H 0.05 2.58 6.43 -2.39 -0.02 2.56 16 48 H 0.05 1.61 8.01 -2.38 -0.02 1.59 16 Total: -1.00 -87.72 389.79 -5.39 -93.11 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: -1.17 Total: 35.89 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: 5.69 Total: 24.81 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -8.14 Total: -118.23 kcal Atomic # 8 Polarization: -77.49 SS G_CDS: -3.80 Total: -81.29 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -87.72 -5.39 -93.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191951820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.353 kcal (2) G-P(sol) polarization free energy of solvation -87.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds