Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47154 * 270.00368 * 3 2 1 5 5 H 1.48503 * 109.47079 * 30.00440 * 3 2 1 6 6 H 1.48496 * 109.47056 * 149.99971 * 3 2 1 7 7 C 1.38952 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99485 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99895 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99858 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99674 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00215 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47292 * 180.02562 * 12 10 9 14 14 C 1.48566 * 110.99788 * 290.12569 * 13 12 10 15 15 C 1.54378 * 104.59328 * 200.96348 * 14 13 12 16 16 H 1.08993 * 110.32983 * 142.74879 * 15 14 13 17 17 O 1.42903 * 110.40558 * 264.91038 * 15 14 13 18 18 C 1.54266 * 105.06267 * 23.84424 * 15 14 13 19 19 H 1.08991 * 110.32656 * 241.00337 * 18 15 14 20 20 N 1.46506 * 110.31817 * 118.89735 * 18 15 14 21 21 C 1.34773 * 119.99437 * 155.00254 * 20 18 15 22 22 O 1.21277 * 120.00457 * 0.02562 * 21 20 18 23 23 C 1.50706 * 119.99943 * 180.02562 * 21 20 18 24 24 H 1.09005 * 109.47446 * 304.99742 * 23 21 20 25 25 C 1.53089 * 109.47903 * 65.02175 * 23 21 20 26 26 C 1.53185 * 109.15997 * 177.59385 * 25 23 21 27 27 C 1.53176 * 109.03501 * 303.02105 * 26 25 23 28 28 C 1.53085 * 109.16706 * 56.98167 * 27 26 25 29 29 O 1.42900 * 109.47946 * 184.97753 * 23 21 20 30 30 C 1.48559 * 110.99953 * 174.70655 * 13 12 10 31 31 H 0.97006 * 120.00116 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00239 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.47093 * 59.99164 * 12 10 9 34 34 H 1.09000 * 109.46589 * 299.99693 * 12 10 9 35 35 H 1.08992 * 110.41263 * 82.18114 * 14 13 12 36 36 H 1.09006 * 110.40540 * 319.73367 * 14 13 12 37 37 H 0.96701 * 113.99711 * 295.68337 * 17 15 14 38 38 H 0.97001 * 120.00302 * 335.00561 * 20 18 15 39 39 H 1.09001 * 109.52511 * 297.49561 * 25 23 21 40 40 H 1.08991 * 109.52209 * 57.68947 * 25 23 21 41 41 H 1.08998 * 109.54074 * 62.88793 * 26 25 23 42 42 H 1.09000 * 109.53785 * 183.15021 * 26 25 23 43 43 H 1.08997 * 109.51760 * 176.88979 * 27 26 25 44 44 H 1.08998 * 109.52113 * 297.01190 * 27 26 25 45 45 H 1.08996 * 109.48150 * 62.36946 * 28 27 26 46 46 H 1.09001 * 109.48232 * 182.40889 * 28 27 26 47 47 H 1.08997 * 110.41364 * 40.25623 * 30 13 12 48 48 H 1.09001 * 110.40764 * 277.81520 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 7 2.1982 -5.9795 -0.0004 14 6 2.9079 -6.0741 -1.3021 15 6 3.4277 -7.5267 -1.3572 16 1 3.3598 -7.9149 -2.3734 17 8 4.7771 -7.5911 -0.8914 18 6 2.4979 -8.3211 -0.4169 19 1 3.0707 -8.7601 0.3998 20 7 1.7931 -9.3668 -1.1627 21 6 1.3442 -10.4646 -0.5226 22 8 1.5232 -10.5867 0.6706 23 6 0.6197 -11.5407 -1.2897 24 1 -0.2246 -11.1020 -1.8217 25 6 1.5782 -12.1842 -2.2952 26 6 0.8520 -13.3163 -3.0283 27 6 0.3276 -14.3223 -1.9991 28 6 -0.5825 -13.5963 -1.0051 29 8 0.1452 -12.5363 -0.3812 30 6 1.4944 -7.2816 0.1270 31 1 -0.4850 0.8401 0.0004 32 1 0.3533 -2.3906 -0.0005 33 1 0.6173 -4.9205 -0.8913 34 1 0.6168 -4.9209 0.8887 35 1 3.7402 -5.3710 -1.3333 36 1 2.2187 -5.8855 -2.1253 37 1 5.4074 -7.1090 -1.4441 38 1 1.6496 -9.2691 -2.1170 39 1 1.9066 -11.4354 -3.0160 40 1 2.4426 -12.5873 -1.7678 41 1 0.0167 -12.9063 -3.5959 42 1 1.5449 -13.8153 -3.7058 43 1 -0.2381 -15.1027 -2.5081 44 1 1.1669 -14.7695 -1.4665 45 1 -1.4425 -13.1847 -1.5333 46 1 -0.9245 -14.2989 -0.2452 47 1 0.5841 -7.2819 -0.4725 48 1 1.2626 -7.4877 1.1720 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192230191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = -155.125459 kcal Electronic energy + Delta-G solvation = -30070.487342 eV Core-core repulsion = 25739.539333 eV Total energy + Delta-G solvation = -4330.948009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74839 -39.64966 -38.51388 -37.73455 -35.65840 -34.72850 -34.04307 -33.78908 -32.06759 -31.25768 -30.02089 -28.17462 -26.79813 -25.68208 -24.41859 -24.14886 -21.60865 -21.27077 -20.83852 -20.66887 -19.21330 -17.96188 -17.91092 -17.30653 -16.76799 -16.17628 -16.01182 -15.95190 -15.64104 -15.26094 -14.95544 -14.79587 -14.54338 -14.35304 -14.15241 -14.07963 -13.83988 -13.22581 -13.16728 -13.11920 -12.90812 -12.74693 -12.20887 -11.95824 -11.93643 -11.85886 -11.75035 -11.56451 -11.50978 -11.24930 -10.95984 -10.94548 -10.82092 -10.39605 -10.22588 -10.10098 -9.99252 -9.80885 -9.49933 -9.39347 -8.53464 -8.05339 -7.95391 -6.42050 -3.82815 2.34481 2.43234 3.17189 3.26061 3.32202 3.55752 3.89297 4.00598 4.08841 4.16788 4.24597 4.27329 4.30842 4.44097 4.48269 4.60009 4.63381 4.75941 4.89322 4.92086 5.05537 5.14351 5.17111 5.21288 5.26009 5.26729 5.38570 5.39051 5.49837 5.52688 5.58443 5.71627 5.74759 5.78601 5.85396 5.96092 6.16039 6.24470 6.27030 6.65989 7.00332 7.11995 7.18849 7.54826 7.64818 7.96482 8.05614 8.61395 9.17799 9.53937 10.05810 10.75727 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025620 B = 0.001937 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.646117 B =14451.448140 C =14953.280216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.034 3.966 13 N -0.475 5.475 14 C 0.007 3.993 15 C 0.099 3.901 16 H 0.064 0.936 17 O -0.551 6.551 18 C 0.149 3.851 19 H 0.115 0.885 20 N -0.721 5.721 21 C 0.521 3.479 22 O -0.509 6.509 23 C 0.076 3.924 24 H 0.084 0.916 25 C -0.146 4.146 26 C -0.121 4.121 27 C -0.160 4.160 28 C 0.059 3.941 29 O -0.353 6.353 30 C 0.023 3.977 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.046 0.954 37 H 0.383 0.617 38 H 0.398 0.602 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.100 0.900 47 H 0.048 0.952 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 -25.993 -10.429 28.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.460 6.460 12 C -0.098 4.098 13 N -0.199 5.199 14 C -0.122 4.122 15 C 0.038 3.962 16 H 0.081 0.919 17 O -0.357 6.357 18 C 0.044 3.956 19 H 0.133 0.867 20 N -0.375 5.375 21 C 0.306 3.694 22 O -0.382 6.382 23 C 0.014 3.986 24 H 0.102 0.898 25 C -0.184 4.184 26 C -0.159 4.159 27 C -0.197 4.197 28 C -0.018 4.018 29 O -0.271 6.271 30 C -0.106 4.106 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.231 0.769 38 H 0.233 0.767 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.118 0.882 47 H 0.066 0.934 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.493 -26.170 -8.399 27.525 hybrid contribution -0.891 1.193 -1.954 2.457 sum -2.384 -24.977 -10.353 27.143 Atomic orbital electron populations 1.69614 1.05934 1.28136 1.50684 1.25264 0.95642 0.99722 0.97382 0.85854 0.79279 0.80820 0.78315 1.20478 1.20926 1.19392 1.19693 0.93351 0.82183 1.47529 0.87910 1.41857 1.09169 1.04562 1.64583 1.19665 0.88390 0.84438 0.84511 1.90505 1.13605 1.86931 1.54992 1.22095 0.94197 0.91682 1.01802 1.65142 1.23468 1.00272 1.31015 1.23924 1.00792 0.96737 0.90700 1.22653 0.83477 0.94562 0.95477 0.91874 1.86523 1.16353 1.76596 1.56178 1.21554 0.91916 0.87156 0.95008 0.86715 1.45918 1.59401 1.20078 1.12147 1.20141 0.79224 0.82027 0.88021 1.90762 1.54882 1.77861 1.14701 1.21870 0.96903 0.89265 0.90517 0.89821 1.22156 0.99114 0.99130 0.98045 1.21592 1.00416 0.96143 0.97709 1.22227 1.00917 0.98727 0.97859 1.22678 0.93211 0.89127 0.96756 1.88085 1.72899 1.34126 1.32005 1.23562 0.95243 0.89394 1.02423 0.91892 0.77519 0.93231 0.89039 0.87294 0.93593 0.76923 0.76695 0.90203 0.90173 0.91440 0.90853 0.90574 0.90741 0.92921 0.88234 0.93412 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 10 C 0.44 10.48 7.59 -10.98 -0.08 10.40 16 11 O -0.58 -15.46 14.41 5.55 0.08 -15.38 16 12 C 0.03 0.61 5.30 -4.98 -0.03 0.58 16 13 N -0.47 -8.07 5.06 -231.41 -1.17 -9.24 16 14 C 0.01 0.10 5.54 -2.18 -0.01 0.09 16 15 C 0.10 1.17 4.18 -25.35 -0.11 1.06 16 16 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 17 O -0.55 -7.19 13.27 -35.23 -0.47 -7.66 16 18 C 0.15 1.88 3.22 -66.54 -0.21 1.67 16 19 H 0.11 1.79 7.40 -51.93 -0.38 1.41 16 20 N -0.72 -6.88 5.03 -52.46 -0.26 -7.15 16 21 C 0.52 6.10 7.18 -10.98 -0.08 6.02 16 22 O -0.51 -8.48 16.16 -14.30 -0.23 -8.71 16 23 C 0.08 0.65 3.05 -27.83 -0.09 0.57 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 C -0.15 -0.91 5.37 -26.59 -0.14 -1.05 16 26 C -0.12 -0.57 6.03 -26.54 -0.16 -0.73 16 27 C -0.16 -0.83 6.14 -26.60 -0.16 -0.99 16 28 C 0.06 0.39 6.84 37.20 0.25 0.65 16 29 O -0.35 -3.80 9.94 -55.09 -0.55 -4.35 16 30 C 0.02 0.32 6.20 -2.18 -0.01 0.31 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 33 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 34 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 35 H 0.11 1.92 6.85 -51.93 -0.36 1.56 16 36 H 0.05 0.62 7.82 -51.93 -0.41 0.21 16 37 H 0.38 3.49 9.12 45.56 0.42 3.90 16 38 H 0.40 2.44 8.20 -40.82 -0.33 2.11 16 39 H 0.08 0.34 7.99 -51.93 -0.41 -0.07 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.59 7.91 -51.93 -0.41 0.18 16 48 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 390.51 15.07 5.88 5.88 Total: -1.00 -36.42 390.51 -8.90 -45.33 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -6.76 Total: 12.77 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -1.07 Total: 10.62 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.77 Total: -54.50 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.17 Total: -36.10 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.42 -8.90 -45.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192230191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.799 kcal (2) G-P(sol) polarization free energy of solvation -36.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds