Wall clock time and date at job start Sat Apr 11 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00096 * 2 1 4 4 H 1.48501 * 109.46935 * 239.99741 * 3 2 1 5 5 H 1.48498 * 109.47595 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47299 * 120.00142 * 3 2 1 7 7 C 1.38952 * 119.99518 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99666 * 179.72264 * 7 2 1 9 9 N 1.37100 * 120.00308 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00000 * 179.71875 * 9 7 2 11 11 O 1.21300 * 120.00106 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99862 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.46874 * 186.13793 * 12 10 9 14 14 C 1.47903 * 110.99848 * 176.64192 * 13 12 10 15 15 C 1.53993 * 107.05807 * 214.15776 * 14 13 12 16 16 H 1.09003 * 110.30750 * 120.24049 * 15 14 13 17 17 O 1.42897 * 110.31138 * 242.30698 * 15 14 13 18 18 C 1.54591 * 105.14303 * 1.22363 * 15 14 13 19 19 H 1.08992 * 110.72643 * 263.42351 * 18 15 14 20 20 N 1.46502 * 110.72723 * 140.31082 * 18 15 14 21 21 C 1.34778 * 119.99950 * 154.99760 * 20 18 15 22 22 O 1.21286 * 119.99858 * 0.02562 * 21 20 18 23 23 C 1.50697 * 120.00133 * 180.02562 * 21 20 18 24 24 H 1.09006 * 109.47543 * 55.02662 * 23 21 20 25 25 C 1.53092 * 109.48231 * 295.00832 * 23 21 20 26 26 C 1.53184 * 109.16425 * 182.40744 * 25 23 21 27 27 C 1.53172 * 109.03464 * 56.97683 * 26 25 23 28 28 C 1.53097 * 109.16451 * 303.02007 * 27 26 25 29 29 O 1.42898 * 109.48347 * 175.05957 * 23 21 20 30 30 C 1.48535 * 111.00300 * 59.24970 * 13 12 10 31 31 H 0.97006 * 119.99613 * 0.02562 * 1 2 3 32 32 H 0.96995 * 119.99375 * 359.72536 * 9 7 2 33 33 H 1.08995 * 109.47009 * 306.14085 * 12 10 9 34 34 H 1.08999 * 109.46534 * 66.14039 * 12 10 9 35 35 H 1.09001 * 109.91735 * 333.50996 * 14 13 12 36 36 H 1.08998 * 109.91963 * 94.80711 * 14 13 12 37 37 H 0.96709 * 113.99836 * 298.54862 * 17 15 14 38 38 H 0.97000 * 120.00272 * 335.00521 * 20 18 15 39 39 H 1.09007 * 109.51768 * 302.30957 * 25 23 21 40 40 H 1.09000 * 109.52466 * 62.50100 * 25 23 21 41 41 H 1.08998 * 109.54298 * 176.84566 * 26 25 23 42 42 H 1.09002 * 109.53847 * 297.02251 * 26 25 23 43 43 H 1.08998 * 109.52840 * 62.92794 * 27 26 25 44 44 H 1.08999 * 109.52209 * 183.11498 * 27 26 25 45 45 H 1.09002 * 109.48015 * 177.59549 * 28 27 26 46 46 H 1.08998 * 109.47759 * 297.62678 * 28 27 26 47 47 H 1.09004 * 110.66321 * 278.15576 * 30 13 12 48 48 H 1.08999 * 110.66775 * 41.27784 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 -0.0040 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 -0.0047 11 8 3.2100 -3.5580 -0.0089 12 6 1.2435 -4.8630 -0.0041 13 7 2.1918 -5.9758 0.1377 14 6 1.4811 -7.2702 0.2229 15 6 2.2949 -8.1708 1.1704 16 1 1.6863 -8.4698 2.0239 17 8 2.7696 -9.3240 0.4727 18 6 3.4833 -7.2983 1.6355 19 1 4.3684 -7.4985 1.0319 20 7 3.7654 -7.5209 3.0558 21 6 5.0003 -7.2866 3.5423 22 8 5.8778 -6.8910 2.8045 23 6 5.2907 -7.5162 5.0031 24 1 5.0204 -8.5376 5.2713 25 6 4.4739 -6.5338 5.8466 26 6 4.8194 -6.7327 7.3256 27 6 6.3280 -6.5474 7.5155 28 6 7.0732 -7.5293 6.6075 29 8 6.6831 -7.3110 5.2503 30 6 2.9680 -5.8565 1.3985 31 1 -0.4850 0.8401 -0.0004 32 1 0.3533 -2.3906 0.0042 33 1 0.5405 -4.8762 0.8288 34 1 0.6979 -4.9678 -0.9419 35 1 0.4793 -7.1180 0.6245 36 1 1.4226 -7.7274 -0.7648 37 1 2.0670 -9.8869 0.1195 38 1 3.0635 -7.8371 3.6460 39 1 4.7139 -5.5125 5.5506 40 1 3.4106 -6.7182 5.6930 41 1 4.2833 -5.9987 7.9273 42 1 4.5324 -7.7377 7.6351 43 1 6.6055 -5.5265 7.2532 44 1 6.5909 -6.7415 8.5553 45 1 8.1473 -7.3727 6.7067 46 1 6.8264 -8.5508 6.8969 47 1 3.8018 -5.1657 1.2729 48 1 2.3238 -5.5385 2.2182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192230193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:33 Heat of formation + Delta-G solvation = -154.837421 kcal Electronic energy + Delta-G solvation = -30581.787184 eV Core-core repulsion = 26250.851665 eV Total energy + Delta-G solvation = -4330.935519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58193 -39.61531 -38.40585 -37.77063 -35.78944 -34.60109 -33.91405 -33.77189 -31.93183 -31.25494 -30.02083 -28.14854 -26.63705 -25.63694 -24.27426 -24.10639 -21.60709 -21.18289 -20.84094 -20.45486 -19.20940 -17.90831 -17.83708 -17.34828 -16.79964 -16.20881 -16.01597 -15.85068 -15.32527 -15.07883 -14.82640 -14.70955 -14.44720 -14.35153 -14.21808 -13.93215 -13.61047 -13.33183 -13.11385 -13.00925 -12.95098 -12.82158 -12.23041 -11.87953 -11.83958 -11.72649 -11.57697 -11.50594 -11.39754 -11.28860 -10.97627 -10.79823 -10.68532 -10.43451 -10.33963 -10.19768 -9.86149 -9.63937 -9.47615 -9.15844 -8.45919 -8.06241 -7.93553 -6.41527 -3.82055 2.55208 2.60675 3.21389 3.26710 3.31892 3.71142 3.89402 3.93280 4.02237 4.24554 4.30221 4.42037 4.46007 4.58635 4.60130 4.64408 4.73375 4.80170 4.84438 5.05262 5.06130 5.20306 5.23821 5.31434 5.32892 5.37749 5.42947 5.48496 5.55425 5.67887 5.68046 5.69717 5.80733 5.87997 5.92730 6.05050 6.24848 6.30870 6.52451 6.81538 7.05950 7.14663 7.36534 7.43739 7.56070 8.06354 8.17126 8.61871 9.18671 9.53873 10.06025 10.76187 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009290 B = 0.002968 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.134939 B = 9431.623146 C =11661.800785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.574 6.574 12 C 0.037 3.963 13 N -0.486 5.486 14 C 0.004 3.996 15 C 0.090 3.910 16 H 0.065 0.935 17 O -0.554 6.554 18 C 0.149 3.851 19 H 0.117 0.883 20 N -0.720 5.720 21 C 0.520 3.480 22 O -0.504 6.504 23 C 0.078 3.922 24 H 0.082 0.918 25 C -0.148 4.148 26 C -0.120 4.120 27 C -0.160 4.160 28 C 0.060 3.940 29 O -0.353 6.353 30 C 0.035 3.965 31 H 0.272 0.728 32 H 0.392 0.608 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.378 0.622 38 H 0.396 0.604 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.051 0.949 47 H 0.118 0.882 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 -19.909 14.234 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.457 6.457 12 C -0.094 4.094 13 N -0.211 5.211 14 C -0.125 4.125 15 C 0.030 3.970 16 H 0.083 0.917 17 O -0.359 6.359 18 C 0.044 3.956 19 H 0.135 0.865 20 N -0.374 5.374 21 C 0.304 3.696 22 O -0.376 6.376 23 C 0.016 3.984 24 H 0.100 0.900 25 C -0.186 4.186 26 C -0.158 4.158 27 C -0.198 4.198 28 C -0.017 4.017 29 O -0.270 6.270 30 C -0.094 4.094 31 H 0.082 0.918 32 H 0.225 0.775 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.226 0.774 38 H 0.231 0.769 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.117 0.883 46 H 0.069 0.931 47 H 0.136 0.864 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.826 -19.107 13.237 23.416 hybrid contribution -2.146 0.446 1.075 2.442 sum 0.679 -18.661 14.312 23.527 Atomic orbital electron populations 1.69605 1.05939 1.28241 1.50689 1.25250 0.95628 0.99704 0.97300 0.85920 0.78766 0.80412 0.79170 1.19827 1.20994 1.19889 1.19670 0.93385 0.82179 1.47556 0.87913 1.41841 1.09123 1.04551 1.64490 1.19683 0.88447 0.84522 0.84799 1.90533 1.13544 1.86797 1.54835 1.22120 0.93942 0.91448 1.01923 1.64496 1.21666 0.99921 1.34971 1.23692 0.96149 0.92105 1.00570 1.22865 0.94551 0.86051 0.93511 0.91708 1.86611 1.37277 1.36928 1.75111 1.21887 0.99056 0.93654 0.81049 0.86514 1.45764 1.11880 1.69599 1.10155 1.20125 0.82420 0.77865 0.89168 1.90788 1.44948 1.42693 1.59182 1.21849 0.84493 0.99467 0.92544 0.90044 1.22175 0.99968 1.01067 0.95425 1.21579 0.96222 1.02328 0.95623 1.22233 0.95760 1.01460 1.00327 1.22665 0.99912 0.97598 0.81528 1.88093 1.21478 1.90623 1.26856 1.23713 0.99840 0.95971 0.89887 0.91850 0.77537 0.93387 0.88892 0.93036 0.89163 0.77446 0.76931 0.89882 0.90249 0.90830 0.91610 0.90589 0.90652 0.88298 0.93091 0.86350 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 9 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 10 C 0.44 10.49 7.42 -10.99 -0.08 10.41 16 11 O -0.57 -15.83 13.87 5.54 0.08 -15.75 16 12 C 0.04 0.66 5.30 -4.98 -0.03 0.64 16 13 N -0.49 -8.20 5.11 -231.89 -1.18 -9.39 16 14 C 0.00 0.05 6.51 -2.75 -0.02 0.03 16 15 C 0.09 0.97 4.09 -25.38 -0.10 0.87 16 16 H 0.07 0.51 7.75 -51.93 -0.40 0.11 16 17 O -0.55 -5.93 13.26 -35.23 -0.47 -6.39 16 18 C 0.15 2.12 3.17 -66.07 -0.21 1.91 16 19 H 0.12 2.08 7.49 -51.93 -0.39 1.69 16 20 N -0.72 -8.40 5.14 -52.01 -0.27 -8.66 16 21 C 0.52 7.45 7.18 -10.99 -0.08 7.37 16 22 O -0.50 -9.99 16.15 -14.30 -0.23 -10.22 16 23 C 0.08 0.84 3.05 -27.84 -0.09 0.75 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 C -0.15 -1.31 5.37 -26.59 -0.14 -1.45 16 26 C -0.12 -0.82 6.03 -26.55 -0.16 -0.98 16 27 C -0.16 -1.16 6.14 -26.59 -0.16 -1.33 16 28 C 0.06 0.50 6.84 37.21 0.25 0.76 16 29 O -0.35 -4.56 9.94 -55.09 -0.55 -5.11 16 30 C 0.03 0.59 5.27 -1.90 -0.01 0.58 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 33 H 0.05 0.75 7.98 -51.93 -0.41 0.34 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.05 0.51 7.68 -51.93 -0.40 0.12 16 36 H 0.09 1.00 7.96 -51.93 -0.41 0.59 16 37 H 0.38 2.15 9.11 45.56 0.41 2.57 16 38 H 0.40 3.07 8.24 -40.82 -0.34 2.74 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.54 7.99 -51.93 -0.41 0.12 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.12 2.62 6.43 -51.93 -0.33 2.28 16 48 H 0.04 0.69 8.01 -51.93 -0.42 0.27 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -37.26 389.51 -8.92 -46.17 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -6.74 Total: 13.89 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -1.07 Total: 11.54 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.79 Total: -56.30 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -1.17 Total: -37.47 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.26 -8.92 -46.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192230193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.663 kcal (2) G-P(sol) polarization free energy of solvation -37.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds