Wall clock time and date at job start Sat Apr 11 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00040 * 2 1 4 4 C 1.53004 * 109.47706 * 119.99515 * 3 2 1 5 5 O 1.42907 * 109.47352 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.47102 * 239.99928 * 3 2 1 7 7 C 1.50697 * 109.47209 * 56.36151 * 6 3 2 8 8 O 1.21277 * 120.00006 * 5.57407 * 7 6 3 9 9 N 1.34773 * 120.00088 * 185.57418 * 7 6 3 10 10 C 1.46498 * 120.00101 * 179.97438 * 9 7 6 11 11 H 1.08993 * 110.63007 * 36.65282 * 10 9 7 12 12 C 1.54322 * 110.70245 * 273.54368 * 10 9 7 13 13 N 1.47445 * 107.23343 * 219.32890 * 12 10 9 14 14 C 1.46901 * 111.00330 * 236.74621 * 13 12 10 15 15 C 1.50699 * 109.46782 * 190.00128 * 14 13 12 16 16 O 1.21290 * 120.00517 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99747 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99800 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00114 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99876 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99665 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00070 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47132 * 59.99945 * 22 20 18 24 24 H 1.48500 * 109.46789 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46918 * 299.99677 * 22 20 18 26 26 C 1.47845 * 108.56448 * 359.02028 * 13 12 10 27 27 C 1.54901 * 104.80177 * 24.08981 * 26 13 12 28 28 H 1.09005 * 110.99049 * 81.01872 * 27 26 13 29 29 O 1.42899 * 110.99507 * 204.84314 * 27 26 13 30 30 H 1.07997 * 120.00153 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.00259 * 359.72654 * 1 2 3 32 32 H 1.07996 * 120.00093 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.46966 * 55.91164 * 4 3 2 34 34 H 1.08998 * 109.47309 * 175.91670 * 4 3 2 35 35 H 1.09001 * 109.47195 * 295.92105 * 4 3 2 36 36 H 0.96701 * 113.99808 * 300.00637 * 5 3 2 37 37 H 1.09001 * 109.47059 * 176.36145 * 6 3 2 38 38 H 1.09005 * 109.46813 * 296.35955 * 6 3 2 39 39 H 0.97010 * 119.99959 * 359.97438 * 9 7 6 40 40 H 1.08992 * 109.89591 * 338.74275 * 12 10 9 41 41 H 1.09000 * 109.88591 * 99.93510 * 12 10 9 42 42 H 1.08993 * 109.47026 * 310.00419 * 14 13 12 43 43 H 1.09000 * 109.46788 * 70.00477 * 14 13 12 44 44 H 0.97001 * 120.00278 * 359.97438 * 17 15 14 45 45 H 0.97004 * 119.99218 * 180.02562 * 21 20 18 46 46 H 1.09006 * 110.37267 * 142.92367 * 26 13 12 47 47 H 1.09002 * 110.37306 * 265.25637 * 26 13 12 48 48 H 0.96705 * 113.99251 * 292.26682 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3863 1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3861 -1.2492 7 6 2.0874 1.2167 -2.4780 8 8 0.8811 1.1492 -2.3723 9 7 2.6625 1.1402 -3.6945 10 6 1.8306 0.9750 -4.8890 11 1 0.9020 1.5370 -4.7910 12 6 1.5401 -0.5181 -5.1492 13 7 1.6086 -0.7290 -6.6068 14 6 0.3544 -1.2998 -7.1159 15 6 0.5424 -1.7279 -8.5485 16 8 1.6154 -1.5724 -9.0922 17 7 -0.4821 -2.2826 -9.2260 18 6 -0.3110 -2.6726 -10.5292 19 1 0.6447 -2.5349 -11.0129 20 6 -1.3671 -3.2451 -11.2275 21 7 -2.5298 -3.4131 -10.6386 22 14 -1.1341 -3.7757 -13.0033 23 1 -0.0592 -4.7976 -13.0776 24 1 -2.4019 -4.3533 -13.5176 25 1 -0.7561 -2.5987 -13.8261 26 6 1.9036 0.5660 -7.2564 27 6 2.6060 1.4070 -6.1615 28 1 3.6610 1.1441 -6.0839 29 8 2.4457 2.8053 -6.4084 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5401 0.9353 0.0045 32 1 1.8500 -0.9353 0.0004 33 1 3.6019 0.5187 1.2868 34 1 3.5421 2.2962 1.2134 35 1 2.3118 1.4016 2.1378 36 1 0.5438 2.4030 -0.7658 37 1 3.4385 2.3564 -1.2824 38 1 3.6934 0.5960 -1.2172 39 1 3.6274 1.1946 -3.7791 40 1 2.2879 -1.1340 -4.6498 41 1 0.5445 -0.7711 -4.7845 42 1 0.0769 -2.1636 -6.5119 43 1 -0.4345 -0.5497 -7.0614 44 1 -1.3404 -2.4067 -8.7914 45 1 -3.2670 -3.8131 -11.1260 46 1 2.5683 0.4206 -8.1081 47 1 0.9801 1.0507 -7.5732 48 1 2.9125 3.1220 -7.1939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192524510.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:36 Heat of formation + Delta-G solvation = -135.986822 kcal Electronic energy + Delta-G solvation = -30240.654313 eV Core-core repulsion = 25910.536218 eV Total energy + Delta-G solvation = -4330.118095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.72109 -39.52734 -38.11320 -37.54705 -35.89842 -34.57145 -33.83651 -33.17999 -31.66623 -31.26773 -30.26359 -28.77071 -27.82845 -26.31421 -24.24861 -22.83697 -21.62749 -21.29243 -20.60523 -19.78920 -19.24057 -17.97526 -17.68320 -17.43156 -17.12917 -16.61761 -16.10259 -15.71477 -15.49164 -15.04838 -14.81157 -14.59627 -14.53086 -14.11006 -13.85859 -13.73049 -13.21220 -13.11772 -12.97776 -12.86104 -12.74808 -12.54655 -12.45950 -12.31463 -12.08032 -11.90898 -11.88121 -11.51500 -11.34613 -11.26244 -11.00768 -10.75335 -10.45482 -10.40301 -10.29550 -10.22378 -10.11206 -9.50802 -9.45231 -9.27862 -8.51333 -8.00450 -7.94006 -6.42397 -3.83467 2.19270 2.35660 2.80464 3.18911 3.24884 3.28811 3.65041 3.88903 3.99660 4.10956 4.24841 4.29549 4.39246 4.47799 4.53542 4.71791 4.85449 4.96796 5.05106 5.11711 5.14373 5.20463 5.21379 5.24966 5.26803 5.46365 5.48913 5.56766 5.76317 5.78304 5.79464 5.82191 5.86952 5.91710 6.15222 6.24981 6.27484 6.47430 6.65530 7.04087 7.09946 7.18561 7.42453 7.48608 7.53852 7.95350 8.04474 8.60443 9.16758 9.53171 10.04676 10.75234 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.002105 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.800643 B =13299.519998 C =14170.299432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.197 4.197 3 C 0.179 3.821 4 C -0.135 4.135 5 O -0.562 6.562 6 C -0.168 4.168 7 C 0.517 3.483 8 O -0.535 6.535 9 N -0.715 5.715 10 C 0.134 3.866 11 H 0.103 0.897 12 C 0.034 3.966 13 N -0.498 5.498 14 C 0.039 3.961 15 C 0.444 3.556 16 O -0.580 6.580 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.025 3.975 27 C 0.085 3.915 28 H 0.078 0.922 29 O -0.559 6.559 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.387 0.613 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.401 0.599 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.101 0.899 47 H 0.055 0.945 48 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.805 10.137 20.429 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.215 4.215 3 C 0.137 3.863 4 C -0.192 4.192 5 O -0.373 6.373 6 C -0.208 4.208 7 C 0.304 3.696 8 O -0.412 6.412 9 N -0.366 5.366 10 C 0.028 3.972 11 H 0.121 0.879 12 C -0.095 4.095 13 N -0.223 5.223 14 C -0.092 4.092 15 C 0.229 3.771 16 O -0.464 6.464 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.103 4.103 27 C 0.025 3.975 28 H 0.095 0.905 29 O -0.364 6.364 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.240 0.760 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.236 0.764 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.119 0.881 47 H 0.074 0.926 48 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 10.786 9.857 21.022 25.601 hybrid contribution -0.650 -0.136 -1.697 1.822 sum 10.136 9.721 19.325 23.889 Atomic orbital electron populations 1.23681 0.95999 1.01842 0.96792 1.23250 0.96861 0.97735 1.03688 1.19778 0.88102 0.85405 0.92994 1.21710 0.98810 1.02373 0.96298 1.86431 1.50964 1.48680 1.51224 1.22465 0.99855 1.05240 0.93242 1.20632 0.89018 0.75428 0.84507 1.90645 1.14758 1.49692 1.86092 1.45917 1.10451 1.74432 1.05838 1.22136 0.95346 0.96679 0.83026 0.87878 1.23254 1.02380 0.94103 0.89743 1.63235 1.33073 1.24047 1.01951 1.22163 0.90243 0.99973 0.96844 1.19679 0.85568 0.84471 0.87334 1.90492 1.26294 1.59712 1.69889 1.41857 1.12015 1.53748 1.12452 1.19635 0.99145 1.36781 0.87332 0.87980 1.25274 0.94858 0.97447 1.00414 1.69610 1.02160 1.44466 1.38023 0.85911 0.77420 0.79016 0.81819 1.19898 1.20980 1.19932 1.23651 1.01006 0.88107 0.97536 1.23216 0.98734 0.81424 0.94105 0.90469 1.86485 1.76793 1.22476 1.50690 0.88780 0.88015 0.87344 0.91024 0.91737 0.91381 0.75995 0.87764 0.87932 0.76397 0.89956 0.91510 0.89142 0.93032 0.77473 0.91801 0.88093 0.92619 0.76800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 12.65 29.02 0.37 -1.12 16 2 C -0.20 -1.82 7.45 -36.03 -0.27 -2.09 16 3 C 0.18 1.51 1.08 -91.77 -0.10 1.42 16 4 C -0.13 -0.88 8.83 37.16 0.33 -0.56 16 5 O -0.56 -6.04 11.93 -52.68 -0.63 -6.67 16 6 C -0.17 -1.15 4.99 -27.88 -0.14 -1.29 16 7 C 0.52 5.02 7.31 -10.99 -0.08 4.94 16 8 O -0.53 -6.75 11.68 -11.89 -0.14 -6.89 16 9 N -0.72 -6.37 5.13 -52.04 -0.27 -6.63 16 10 C 0.13 1.55 2.97 -66.10 -0.20 1.36 16 11 H 0.10 1.43 7.69 -51.93 -0.40 1.03 16 12 C 0.03 0.45 6.61 -2.83 -0.02 0.43 16 13 N -0.50 -8.02 4.86 -232.69 -1.13 -9.15 16 14 C 0.04 0.70 5.05 -4.98 -0.03 0.68 16 15 C 0.44 10.40 7.58 -10.98 -0.08 10.32 16 16 O -0.58 -15.31 14.61 5.55 0.08 -15.23 16 17 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 18 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 21 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 22 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.03 0.38 5.48 -2.30 -0.01 0.37 16 27 C 0.09 0.96 4.03 -24.59 -0.10 0.86 16 28 H 0.08 0.74 8.00 -51.93 -0.42 0.33 16 29 O -0.56 -6.05 13.47 -35.23 -0.47 -6.53 16 30 H 0.09 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.10 1.09 6.42 -52.48 -0.34 0.75 16 32 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.39 4.28 5.74 45.56 0.26 4.54 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.40 2.53 8.52 -40.82 -0.35 2.19 16 40 H 0.08 1.02 8.03 -51.93 -0.42 0.60 16 41 H 0.07 0.90 7.55 -51.93 -0.39 0.51 16 42 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 43 H 0.05 0.86 7.85 -51.93 -0.41 0.46 16 44 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.10 1.69 7.38 -51.93 -0.38 1.31 16 47 H 0.06 0.89 7.62 -51.93 -0.40 0.49 16 48 H 0.38 2.66 9.12 45.56 0.42 3.07 16 LS Contribution 392.24 15.07 5.91 5.91 Total: -1.00 -33.82 392.24 -7.60 -41.42 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -6.03 Total: 18.63 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -0.57 Total: 7.35 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.73 Total: -53.96 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.16 Total: -35.32 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.82 -7.60 -41.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192524510.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.563 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds