Wall clock time and date at job start Sat Apr 11 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99986 * 2 1 4 4 C 1.53005 * 109.47481 * 240.00348 * 3 2 1 5 5 O 1.42897 * 109.47486 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.46941 * 120.00586 * 3 2 1 7 7 C 1.50709 * 109.47058 * 179.97438 * 6 3 2 8 8 O 1.21285 * 119.99795 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99685 * 179.97438 * 7 6 3 10 10 C 1.46498 * 119.99428 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.36021 * 35.68987 * 10 9 7 12 12 C 1.53996 * 110.30794 * 273.54794 * 10 9 7 13 13 N 1.47906 * 107.06117 * 242.31048 * 12 10 9 14 14 C 1.46900 * 111.00463 * 214.15679 * 13 12 10 15 15 C 1.50696 * 109.47238 * 169.99874 * 14 13 12 16 16 O 1.21291 * 120.00196 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99951 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00186 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99512 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00094 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00183 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99845 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47249 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47131 * 119.99634 * 22 20 18 25 25 H 1.48502 * 109.46955 * 239.99799 * 22 20 18 26 26 C 1.48534 * 105.81681 * 334.67510 * 13 12 10 27 27 C 1.54591 * 110.30733 * 157.83730 * 10 9 7 28 28 H 1.09002 * 110.72589 * 22.51242 * 27 10 9 29 29 O 1.42904 * 110.72428 * 259.40899 * 27 10 9 30 30 H 1.08002 * 120.00002 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.00122 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.00002 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.47188 * 300.00294 * 4 3 2 34 34 H 1.09003 * 109.47068 * 59.99647 * 4 3 2 35 35 H 1.08997 * 109.47501 * 180.02562 * 4 3 2 36 36 H 0.96709 * 113.99477 * 59.99992 * 5 3 2 37 37 H 1.08998 * 109.47361 * 59.99862 * 6 3 2 38 38 H 1.09001 * 109.46986 * 299.99251 * 6 3 2 39 39 H 0.96998 * 119.99900 * 0.02562 * 9 7 6 40 40 H 1.09003 * 109.91856 * 122.96222 * 12 10 9 41 41 H 1.08997 * 110.08243 * 1.75635 * 12 10 9 42 42 H 1.08996 * 109.46735 * 290.00125 * 14 13 12 43 43 H 1.09001 * 109.46927 * 50.00010 * 14 13 12 44 44 H 0.96993 * 120.00165 * 0.02562 * 17 15 14 45 45 H 0.97006 * 120.00198 * 179.97438 * 21 20 18 46 46 H 1.09004 * 110.66939 * 157.64184 * 26 13 12 47 47 H 1.09002 * 110.66619 * 280.76580 * 26 13 12 48 48 H 0.96700 * 114.00467 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 8 1.1349 2.3913 0.0006 6 6 2.9432 1.3860 1.2492 7 6 3.6972 2.6909 1.2489 8 8 3.5462 3.4783 0.3389 9 7 4.5393 2.9827 2.2599 10 6 5.2718 4.2514 2.2599 11 1 4.6551 5.0454 1.8389 12 6 6.5816 4.1123 1.4620 13 7 7.6932 4.3560 2.4068 14 6 8.8146 5.0293 1.7381 15 6 9.8171 5.4796 2.7692 16 8 9.6175 5.2607 3.9454 17 7 10.9361 6.1246 2.3843 18 6 11.8485 6.5338 3.3223 19 1 11.6703 6.3396 4.3696 20 6 13.0019 7.1993 2.9255 21 7 13.2185 7.4360 1.6512 22 14 14.2454 7.7561 4.2035 23 1 13.7706 7.3709 5.5568 24 1 15.5547 7.1091 3.9350 25 1 14.3989 9.2316 4.1346 26 6 7.1285 5.2065 3.4857 27 6 5.7110 4.6175 3.6962 28 1 5.7524 3.7283 4.3253 29 8 4.8326 5.5933 4.2603 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9352 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.6514 0.5577 -1.2494 34 1 2.3164 1.3285 -2.1393 35 1 3.4884 2.3300 -1.2491 36 1 0.5439 2.4030 0.7660 37 1 3.6515 0.5575 1.2491 38 1 2.3166 1.3283 2.1392 39 1 4.6603 2.3528 2.9875 40 1 6.6079 4.8498 0.6598 41 1 6.6615 3.1081 1.0458 42 1 9.2924 4.3374 1.0446 43 1 8.4436 5.8952 1.1897 44 1 11.0960 6.2994 1.4438 45 1 14.0236 7.9009 1.3743 46 1 7.7213 5.1173 4.3961 47 1 7.0691 6.2464 3.1645 48 1 5.0643 5.8571 5.1614 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192524513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:38 Heat of formation + Delta-G solvation = -129.005756 kcal Electronic energy + Delta-G solvation = -30055.177211 eV Core-core repulsion = 25725.361837 eV Total energy + Delta-G solvation = -4329.815374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.56449 -39.47139 -38.24249 -37.59481 -35.77750 -34.47299 -33.84365 -33.32580 -31.69454 -31.34781 -30.25276 -28.53190 -27.65236 -26.28364 -24.27153 -23.16453 -21.62804 -20.93343 -20.36798 -19.97778 -19.30006 -17.97477 -17.68466 -17.55980 -16.58319 -16.57601 -16.09465 -15.80128 -15.40027 -15.05524 -14.76506 -14.69918 -14.67301 -14.10405 -13.82841 -13.71554 -13.40948 -13.13239 -13.05762 -12.62139 -12.56070 -12.52009 -12.36292 -12.19033 -11.90333 -11.78006 -11.67265 -11.57857 -11.40531 -11.33760 -11.04490 -10.63848 -10.51595 -10.36652 -10.27527 -10.12216 -9.85981 -9.65211 -9.53806 -9.21289 -8.46363 -8.08889 -7.97227 -6.46610 -3.87857 1.78924 2.51752 2.94267 3.12784 3.23914 3.30441 3.79612 3.83979 3.94702 4.11108 4.29095 4.35835 4.36453 4.53058 4.63589 4.80291 4.85587 4.91008 5.00574 5.11044 5.13726 5.20815 5.31051 5.36149 5.41924 5.43045 5.61839 5.68692 5.76970 5.79078 5.84421 5.87579 6.08231 6.08331 6.17860 6.20062 6.30398 6.41398 6.48786 7.02463 7.14557 7.35012 7.40383 7.50568 7.56153 8.00412 8.13236 8.55304 9.12302 9.47954 9.98699 10.70918 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027443 B = 0.001929 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.047126 B =14511.739216 C =15081.106501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.187 4.187 3 C 0.177 3.823 4 C -0.148 4.148 5 O -0.538 6.538 6 C -0.166 4.166 7 C 0.514 3.486 8 O -0.515 6.515 9 N -0.721 5.721 10 C 0.145 3.855 11 H 0.103 0.897 12 C 0.027 3.973 13 N -0.491 5.491 14 C 0.035 3.965 15 C 0.442 3.558 16 O -0.584 6.584 17 N -0.559 5.559 18 C -0.300 4.300 19 H 0.104 0.896 20 C 0.023 3.977 21 N -0.899 5.899 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.010 3.990 27 C 0.091 3.909 28 H 0.074 0.926 29 O -0.563 6.563 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.368 0.632 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.400 0.600 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.393 0.607 45 H 0.272 0.728 46 H 0.125 0.875 47 H 0.049 0.951 48 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.874 -13.610 -1.156 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.205 4.205 3 C 0.136 3.864 4 C -0.205 4.205 5 O -0.342 6.342 6 C -0.206 4.206 7 C 0.300 3.700 8 O -0.390 6.390 9 N -0.373 5.373 10 C 0.039 3.961 11 H 0.121 0.879 12 C -0.103 4.103 13 N -0.216 5.216 14 C -0.096 4.096 15 C 0.227 3.773 16 O -0.469 6.469 17 N -0.195 5.195 18 C -0.430 4.430 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.540 5.540 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.118 4.118 27 C 0.030 3.970 28 H 0.092 0.908 29 O -0.368 6.368 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.215 0.785 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.234 0.766 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.143 0.857 47 H 0.067 0.933 48 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -21.723 -13.474 -2.080 25.647 hybrid contribution 0.665 0.596 0.998 1.339 sum -21.058 -12.878 -1.082 24.707 Atomic orbital electron populations 1.23880 0.96057 1.02422 0.99436 1.23623 0.96759 0.98807 1.01346 1.19850 0.87993 0.84054 0.94536 1.21952 0.98870 1.04434 0.95252 1.86748 1.50056 1.48857 1.48568 1.22405 1.00531 0.96932 1.00757 1.20425 0.79170 0.88404 0.82039 1.90704 1.63874 1.49648 1.34769 1.46071 1.44922 1.20682 1.25658 1.21660 0.92878 0.86597 0.94942 0.87869 1.23354 0.89356 1.02554 0.94992 1.64587 1.05227 1.42787 1.08998 1.22132 0.92956 0.97908 0.96622 1.19662 0.84151 0.84081 0.89372 1.90412 1.77303 1.60781 1.18433 1.41858 1.17704 1.49794 1.10169 1.19749 0.98657 1.33438 0.91158 0.87787 1.25285 0.98428 0.97290 0.96909 1.69619 1.28031 1.41736 1.14627 0.85789 0.79821 0.78186 0.80468 1.19214 1.20702 1.20738 1.24129 0.93230 0.95174 0.99266 1.23019 0.89292 0.91396 0.93253 0.90797 1.86464 1.54318 1.61310 1.34697 0.87699 0.88221 0.86601 0.91803 0.92188 0.88659 0.78525 0.87861 0.88698 0.76586 0.92740 0.89778 0.88958 0.93027 0.77385 0.91826 0.85748 0.93259 0.76835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 13.93 29.01 0.40 -0.68 16 2 C -0.19 -1.21 8.77 -36.03 -0.32 -1.53 16 3 C 0.18 1.48 0.94 -91.77 -0.09 1.40 16 4 C -0.15 -1.44 8.50 37.16 0.32 -1.12 16 5 O -0.54 -5.41 10.85 -53.47 -0.58 -5.99 16 6 C -0.17 -1.17 4.93 -27.88 -0.14 -1.31 16 7 C 0.51 5.51 7.38 -10.98 -0.08 5.43 16 8 O -0.52 -7.57 12.66 -12.69 -0.16 -7.73 16 9 N -0.72 -7.19 5.03 -52.49 -0.26 -7.45 16 10 C 0.14 1.84 3.06 -66.58 -0.20 1.64 16 11 H 0.10 1.54 7.58 -51.93 -0.39 1.15 16 12 C 0.03 0.37 6.48 -2.75 -0.02 0.35 16 13 N -0.49 -8.00 5.26 -231.89 -1.22 -9.22 16 14 C 0.04 0.63 5.52 -4.98 -0.03 0.61 16 15 C 0.44 10.14 7.49 -10.99 -0.08 10.05 16 16 O -0.58 -14.85 13.10 5.55 0.07 -14.77 16 17 N -0.56 -13.94 5.29 -10.97 -0.06 -14.00 16 18 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 22 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 C 0.01 0.16 5.03 -1.90 -0.01 0.15 16 27 C 0.09 1.13 4.14 -24.88 -0.10 1.03 16 28 H 0.07 0.81 7.74 -51.93 -0.40 0.41 16 29 O -0.56 -6.84 13.41 -35.23 -0.47 -7.32 16 30 H 0.10 0.62 6.41 -52.49 -0.34 0.29 16 31 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 32 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.19 5.51 -51.93 -0.29 0.90 16 36 H 0.37 2.42 8.05 45.56 0.37 2.79 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.40 2.97 8.35 -40.82 -0.34 2.63 16 40 H 0.05 0.77 7.57 -51.93 -0.39 0.38 16 41 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 42 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 43 H 0.05 0.87 7.81 -51.93 -0.41 0.46 16 44 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.12 2.31 5.97 -51.93 -0.31 2.00 16 47 H 0.05 0.85 8.02 -51.93 -0.42 0.43 16 48 H 0.38 3.19 9.12 45.56 0.42 3.61 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -34.18 391.11 -7.38 -41.56 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -5.71 Total: 18.68 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -0.59 Total: 8.16 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.82 Total: -54.18 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -1.14 Total: -35.81 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.18 -7.38 -41.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192524513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.448 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds