Wall clock time and date at job start Sat Apr 11 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99986 * 2 1 4 4 C 1.53005 * 109.47481 * 240.00348 * 3 2 1 5 5 O 1.42897 * 109.47486 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.46941 * 120.00586 * 3 2 1 7 7 C 1.50709 * 109.47058 * 179.97438 * 6 3 2 8 8 O 1.21285 * 119.99795 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99685 * 179.97438 * 7 6 3 10 10 C 1.46498 * 119.99428 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.36021 * 35.68987 * 10 9 7 12 12 C 1.53996 * 110.30794 * 273.54794 * 10 9 7 13 13 N 1.47906 * 107.06117 * 242.31048 * 12 10 9 14 14 C 1.46900 * 111.00463 * 214.15679 * 13 12 10 15 15 C 1.50696 * 109.47238 * 169.99874 * 14 13 12 16 16 O 1.21291 * 120.00196 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99951 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00186 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99512 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00094 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00183 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99845 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47249 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47131 * 119.99634 * 22 20 18 25 25 H 1.48502 * 109.46955 * 239.99799 * 22 20 18 26 26 C 1.48534 * 105.81681 * 334.67510 * 13 12 10 27 27 C 1.54591 * 110.30733 * 157.83730 * 10 9 7 28 28 H 1.09002 * 110.72589 * 22.51242 * 27 10 9 29 29 O 1.42904 * 110.72428 * 259.40899 * 27 10 9 30 30 H 1.08002 * 120.00002 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.00122 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.00002 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.47188 * 300.00294 * 4 3 2 34 34 H 1.09003 * 109.47068 * 59.99647 * 4 3 2 35 35 H 1.08997 * 109.47501 * 180.02562 * 4 3 2 36 36 H 0.96709 * 113.99477 * 59.99992 * 5 3 2 37 37 H 1.08998 * 109.47361 * 59.99862 * 6 3 2 38 38 H 1.09001 * 109.46986 * 299.99251 * 6 3 2 39 39 H 0.96998 * 119.99900 * 0.02562 * 9 7 6 40 40 H 1.09003 * 109.91856 * 122.96222 * 12 10 9 41 41 H 1.08997 * 110.08243 * 1.75635 * 12 10 9 42 42 H 1.08996 * 109.46735 * 290.00125 * 14 13 12 43 43 H 1.09001 * 109.46927 * 50.00010 * 14 13 12 44 44 H 0.96993 * 120.00165 * 0.02562 * 17 15 14 45 45 H 0.97006 * 120.00198 * 179.97438 * 21 20 18 46 46 H 1.09004 * 110.66939 * 157.64184 * 26 13 12 47 47 H 1.09002 * 110.66619 * 280.76580 * 26 13 12 48 48 H 0.96700 * 114.00467 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 8 1.1349 2.3913 0.0006 6 6 2.9432 1.3860 1.2492 7 6 3.6972 2.6909 1.2489 8 8 3.5462 3.4783 0.3389 9 7 4.5393 2.9827 2.2599 10 6 5.2718 4.2514 2.2599 11 1 4.6551 5.0454 1.8389 12 6 6.5816 4.1123 1.4620 13 7 7.6932 4.3560 2.4068 14 6 8.8146 5.0293 1.7381 15 6 9.8171 5.4796 2.7692 16 8 9.6175 5.2607 3.9454 17 7 10.9361 6.1246 2.3843 18 6 11.8485 6.5338 3.3223 19 1 11.6703 6.3396 4.3696 20 6 13.0019 7.1993 2.9255 21 7 13.2185 7.4360 1.6512 22 14 14.2454 7.7561 4.2035 23 1 13.7706 7.3709 5.5568 24 1 15.5547 7.1091 3.9350 25 1 14.3989 9.2316 4.1346 26 6 7.1285 5.2065 3.4857 27 6 5.7110 4.6175 3.6962 28 1 5.7524 3.7283 4.3253 29 8 4.8326 5.5933 4.2603 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9352 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.6514 0.5577 -1.2494 34 1 2.3164 1.3285 -2.1393 35 1 3.4884 2.3300 -1.2491 36 1 0.5439 2.4030 0.7660 37 1 3.6515 0.5575 1.2491 38 1 2.3166 1.3283 2.1392 39 1 4.6603 2.3528 2.9875 40 1 6.6079 4.8498 0.6598 41 1 6.6615 3.1081 1.0458 42 1 9.2924 4.3374 1.0446 43 1 8.4436 5.8952 1.1897 44 1 11.0960 6.2994 1.4438 45 1 14.0236 7.9009 1.3743 46 1 7.7213 5.1173 4.3961 47 1 7.0691 6.2464 3.1645 48 1 5.0643 5.8571 5.1614 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192524513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:37 Heat of formation + Delta-G solvation = -160.201687 kcal Electronic energy + Delta-G solvation = -30056.529968 eV Core-core repulsion = 25725.361837 eV Total energy + Delta-G solvation = -4331.168131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50114 -40.67208 -39.59809 -38.58626 -36.93602 -35.99309 -35.28661 -33.93838 -33.33667 -32.32694 -31.39118 -29.52421 -28.72162 -27.72520 -25.97258 -23.85834 -22.84902 -21.89502 -21.34814 -21.05801 -20.53965 -19.89005 -18.68449 -18.34440 -17.82095 -17.42735 -17.32656 -16.71763 -16.55500 -16.29877 -16.14830 -16.05361 -15.61104 -15.44881 -15.33785 -14.87483 -14.45420 -14.32055 -14.08637 -13.83236 -13.71481 -13.52219 -13.43848 -13.18371 -13.09057 -13.00531 -12.89540 -12.64106 -12.50941 -12.43883 -12.41387 -12.11720 -11.97377 -11.78430 -11.48921 -11.20192 -11.10759 -10.54145 -10.29773 -10.28234 -10.06970 -10.02261 -9.46824 -8.48086 -5.97023 1.33841 1.35965 1.41822 1.55845 1.71750 2.00287 2.12815 2.26762 2.63411 3.09470 3.18584 3.29218 3.38114 3.57519 3.67601 3.78178 3.85384 3.99328 4.08577 4.19680 4.23633 4.26986 4.33458 4.41874 4.44033 4.48546 4.62728 4.64979 4.74547 4.79314 4.82160 4.90009 4.98182 5.09783 5.18074 5.34478 5.40290 5.54901 5.69853 5.70312 5.79592 5.84672 6.02109 6.57298 6.59579 6.75139 6.89410 7.10451 7.35449 7.52526 8.06844 8.69511 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.027443 B = 0.001929 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.047126 B =14511.739216 C =15081.106501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.189 4.189 3 C 0.173 3.827 4 C -0.150 4.150 5 O -0.564 6.564 6 C -0.156 4.156 7 C 0.510 3.490 8 O -0.559 6.559 9 N -0.710 5.710 10 C 0.152 3.848 11 H 0.080 0.920 12 C 0.032 3.968 13 N -0.496 5.496 14 C 0.044 3.956 15 C 0.441 3.559 16 O -0.610 6.610 17 N -0.572 5.572 18 C -0.331 4.331 19 H 0.083 0.917 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.995 3.005 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.273 1.273 26 C 0.011 3.989 27 C 0.107 3.893 28 H 0.098 0.902 29 O -0.572 6.572 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.380 0.620 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.415 0.585 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.098 0.902 47 H 0.030 0.970 48 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.718 -15.475 -0.524 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.207 4.207 3 C 0.132 3.868 4 C -0.206 4.206 5 O -0.371 6.371 6 C -0.196 4.196 7 C 0.298 3.702 8 O -0.437 6.437 9 N -0.363 5.363 10 C 0.045 3.955 11 H 0.098 0.902 12 C -0.097 4.097 13 N -0.222 5.222 14 C -0.087 4.087 15 C 0.229 3.771 16 O -0.497 6.497 17 N -0.208 5.208 18 C -0.461 4.461 19 H 0.101 0.899 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.818 3.182 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.117 4.117 27 C 0.047 3.953 28 H 0.116 0.884 29 O -0.380 6.380 30 H 0.118 0.882 31 H 0.132 0.868 32 H 0.151 0.849 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.253 0.747 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.116 0.884 47 H 0.049 0.951 48 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -22.586 -15.364 -1.423 27.353 hybrid contribution 0.842 1.180 0.788 1.650 sum -21.744 -14.184 -0.635 25.969 Atomic orbital electron populations 1.24025 0.96099 1.02948 0.98628 1.23579 0.96824 0.98288 1.02022 1.19916 0.87991 0.84607 0.94330 1.21940 0.99194 1.03540 0.95976 1.86714 1.50787 1.49947 1.49665 1.22421 1.00743 0.95256 1.01181 1.21128 0.78735 0.89210 0.81115 1.90707 1.65203 1.51332 1.36423 1.45940 1.44336 1.19871 1.26178 1.21359 0.92098 0.87420 0.94581 0.90218 1.23356 0.88945 1.02914 0.94460 1.64584 1.05668 1.42328 1.09587 1.22041 0.92416 0.98973 0.95262 1.20532 0.84057 0.82469 0.90055 1.90408 1.77864 1.61286 1.20093 1.41931 1.18265 1.50734 1.09916 1.19727 1.00232 1.35275 0.90834 0.89876 1.26077 0.99633 0.96787 0.98917 1.69685 1.28699 1.41931 1.15891 0.84842 0.77506 0.78026 0.77790 1.19509 1.19687 1.19806 1.23984 0.95278 0.94493 0.97980 1.22846 0.86934 0.91864 0.93643 0.88439 1.86440 1.53996 1.61373 1.36175 0.88151 0.86781 0.84873 0.89838 0.93154 0.91707 0.77132 0.85193 0.86067 0.74707 0.93264 0.88656 0.87011 0.91797 0.77120 0.91320 0.88389 0.95142 0.74907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 13.93 67.78 0.94 -0.80 16 2 C -0.19 -1.95 8.77 25.65 0.22 -1.72 16 3 C 0.17 2.59 0.94 -11.54 -0.01 2.57 16 4 C -0.15 -2.81 8.50 71.98 0.61 -2.19 16 5 O -0.56 -10.96 10.85 -131.54 -1.43 -12.39 16 6 C -0.16 -1.74 4.93 29.85 0.15 -1.59 16 7 C 0.51 10.11 7.38 87.66 0.65 10.75 16 8 O -0.56 -16.39 12.66 14.40 0.18 -16.20 16 9 N -0.71 -12.63 5.03 -438.37 -2.21 -14.83 16 10 C 0.15 3.70 3.06 45.87 0.14 3.84 16 11 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 12 C 0.03 0.86 6.48 86.45 0.56 1.42 16 13 N -0.50 -15.87 5.26 -887.57 -4.67 -20.53 16 14 C 0.04 1.58 5.52 85.56 0.47 2.05 16 15 C 0.44 20.61 7.49 87.66 0.66 21.27 16 16 O -0.61 -31.78 13.10 -3.06 -0.04 -31.82 16 17 N -0.57 -29.12 5.29 -307.00 -1.62 -30.74 16 18 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 19 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 20 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 21 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 22 Si 0.99 42.46 29.55 68.60 2.03 44.49 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 C 0.01 0.36 5.03 86.65 0.44 0.80 16 27 C 0.11 2.55 4.14 31.80 0.13 2.68 16 28 H 0.10 1.89 7.74 -2.39 -0.02 1.87 16 29 O -0.57 -13.23 13.41 -148.98 -2.00 -15.23 16 30 H 0.10 1.05 6.41 -2.91 -0.02 1.03 16 31 H 0.11 0.77 8.06 -2.91 -0.02 0.75 16 32 H 0.13 0.91 8.06 -2.91 -0.02 0.89 16 33 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.65 5.51 -2.39 -0.01 1.64 16 36 H 0.38 4.62 8.05 -74.05 -0.60 4.03 16 37 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.42 4.81 8.35 -92.71 -0.77 4.04 16 40 H 0.05 1.37 7.57 -2.39 -0.02 1.35 16 41 H 0.10 2.34 7.93 -2.39 -0.02 2.32 16 42 H 0.11 3.54 8.14 -2.39 -0.02 3.53 16 43 H 0.06 2.13 7.81 -2.39 -0.02 2.11 16 44 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 45 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 46 H 0.10 3.71 5.97 -2.38 -0.01 3.70 16 47 H 0.03 1.07 8.02 -2.39 -0.02 1.06 16 48 H 0.40 6.15 9.12 -74.06 -0.68 5.47 16 Total: -1.00 -75.88 391.11 -4.98 -80.86 By element: Atomic # 1 Polarization: 46.48 SS G_CDS: -1.75 Total: 44.73 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 6.24 Total: 21.07 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -8.21 Total: -115.51 kcal Atomic # 8 Polarization: -72.35 SS G_CDS: -3.28 Total: -75.64 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -75.88 -4.98 -80.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192524513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.344 kcal (2) G-P(sol) polarization free energy of solvation -75.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds