Wall clock time and date at job start Sat Apr 11 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 119.99978 * 2 1 4 4 H 1.48504 * 109.46690 * 269.99917 * 3 2 1 5 5 H 1.48493 * 109.47192 * 29.99920 * 3 2 1 6 6 H 1.48498 * 109.46801 * 150.00109 * 3 2 1 7 7 C 1.38950 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00321 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99698 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99924 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99670 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99811 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47180 * 179.97438 * 12 10 9 14 14 C 1.46202 * 110.99636 * 64.98996 * 13 12 10 15 15 C 1.51273 * 109.10092 * 144.77676 * 14 13 12 16 16 C 1.54177 * 109.77954 * 92.30801 * 15 14 13 17 17 N 1.47611 * 111.09093 * 320.23860 * 16 15 14 18 18 C 1.34778 * 118.74518 * 138.19802 * 17 16 15 19 19 O 1.21276 * 120.00297 * 179.73781 * 18 17 16 20 20 C 1.50705 * 119.99640 * 359.73621 * 18 17 16 21 21 H 1.08996 * 109.57894 * 305.15934 * 20 18 17 22 22 C 1.53143 * 109.52412 * 65.32741 * 20 18 17 23 23 O 1.43073 * 109.14759 * 175.21431 * 22 20 18 24 24 C 1.43075 * 113.59236 * 302.04125 * 23 22 20 25 25 C 1.53143 * 109.14823 * 57.95910 * 24 23 22 26 26 O 1.43073 * 109.15100 * 304.68541 * 25 24 23 27 27 C 1.44878 * 122.50891 * 317.92533 * 17 16 15 28 28 C 1.41441 * 111.00051 * 293.95904 * 13 12 10 29 29 H 0.97001 * 119.99909 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99743 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46901 * 59.99900 * 12 10 9 32 32 H 1.08995 * 109.47354 * 300.00055 * 12 10 9 33 33 H 1.09007 * 109.53160 * 264.65713 * 14 13 12 34 34 H 1.08996 * 109.53371 * 24.81001 * 14 13 12 35 35 H 1.08998 * 109.44218 * 212.45430 * 15 14 13 36 36 H 1.09002 * 109.44397 * 332.38793 * 15 14 13 37 37 H 1.08997 * 109.31363 * 199.77544 * 16 15 14 38 38 H 1.08996 * 109.12092 * 80.58633 * 16 15 14 39 39 H 1.08996 * 109.52097 * 295.11334 * 22 20 18 40 40 H 1.08995 * 109.52375 * 55.31093 * 22 20 18 41 41 H 1.09004 * 109.52835 * 177.85434 * 24 23 22 42 42 H 1.08995 * 109.53001 * 297.99194 * 24 23 22 43 43 H 1.09006 * 109.52544 * 184.78090 * 25 24 23 44 44 H 1.09001 * 109.52898 * 64.59125 * 25 24 23 45 45 H 1.09006 * 109.43812 * 210.06788 * 27 17 16 46 46 H 1.08995 * 109.43674 * 329.98174 * 27 17 16 47 47 H 1.08995 * 109.38832 * 71.52501 * 28 13 12 48 48 H 1.08998 * 109.38704 * 311.83439 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0504 -3.7556 0.0017 14 6 5.6810 -4.4424 -1.2350 15 6 6.7905 -5.3947 -1.6227 16 6 6.5105 -6.7906 -1.0310 17 7 5.9632 -6.6880 0.3361 18 6 4.9470 -7.4995 0.6900 19 8 4.4831 -7.4378 1.8088 20 6 4.3872 -8.4836 -0.3046 21 1 4.0880 -7.9569 -1.2108 22 6 5.4540 -9.5274 -0.6478 23 8 4.8811 -10.5199 -1.5044 24 6 3.7449 -11.1790 -0.9372 25 6 2.6781 -10.1352 -0.5941 26 8 3.2509 -9.1427 0.2625 27 6 6.4805 -5.7522 1.3137 28 6 5.7138 -4.4117 1.2087 29 1 -0.4850 0.8401 -0.0004 30 1 3.8649 -0.3633 0.0007 31 1 5.9240 -1.8567 0.8911 32 1 5.9240 -1.8568 -0.8889 33 1 4.7584 -5.0018 -1.0795 34 1 5.5338 -3.7100 -2.0286 35 1 6.8449 -5.4653 -2.7091 36 1 7.7393 -5.0235 -1.2352 37 1 7.4380 -7.3625 -1.0020 38 1 5.7920 -7.3097 -1.6652 39 1 6.2868 -9.0431 -1.1575 40 1 5.8105 -9.9986 0.2681 41 1 3.3398 -11.8908 -1.6566 42 1 4.0442 -11.7066 -0.0316 43 1 1.8451 -10.6196 -0.0843 44 1 2.3214 -9.6641 -1.5100 45 1 6.3531 -6.1655 2.3143 46 1 7.5399 -5.5791 1.1249 47 1 4.6415 -4.6058 1.2282 48 1 5.9802 -3.7756 2.0527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194882443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:46 Heat of formation + Delta-G solvation = -121.404597 kcal Electronic energy + Delta-G solvation = -31858.249466 eV Core-core repulsion = 27528.763703 eV Total energy + Delta-G solvation = -4329.485763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99495 -39.77256 -38.80129 -37.23513 -36.20850 -35.16301 -33.85400 -32.70524 -32.04119 -31.71111 -29.56541 -28.17933 -26.83737 -25.70418 -25.20692 -23.87599 -22.63408 -21.53588 -20.64841 -19.45609 -19.31334 -18.32507 -17.67972 -17.11713 -16.85420 -16.40928 -16.22106 -15.90157 -15.57025 -15.40597 -15.07675 -14.96416 -14.89682 -14.45205 -13.97239 -13.77008 -13.55685 -13.51323 -13.23988 -13.19198 -12.74935 -12.63559 -12.33023 -11.98382 -11.93437 -11.79084 -11.55811 -11.41380 -11.23490 -11.17445 -10.99134 -10.89969 -10.83281 -10.61912 -10.56440 -10.02103 -9.70051 -9.57386 -9.43245 -9.17361 -8.66276 -8.20832 -7.55074 -6.34302 -3.85594 2.50194 2.66779 3.00369 3.04238 3.12960 3.33049 3.59678 3.67835 4.07229 4.14397 4.19123 4.33497 4.57743 4.62966 4.65844 4.69894 4.80810 4.86462 4.90670 5.03567 5.13598 5.17433 5.24886 5.31674 5.38137 5.43693 5.47002 5.54192 5.58744 5.66148 5.75198 5.84112 5.87250 5.90660 6.01988 6.04970 6.41177 6.44710 6.54961 6.67873 6.77657 7.23598 7.27754 7.53872 7.65656 8.11965 8.16160 8.55081 8.91752 9.39200 9.78112 10.78746 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.002988 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.067752 B = 9369.941186 C =10345.631963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.881 3.119 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.118 0.882 9 N -0.586 5.586 10 C 0.413 3.587 11 O -0.574 6.574 12 C 0.046 3.954 13 N -0.534 5.534 14 C 0.070 3.930 15 C -0.130 4.130 16 C 0.100 3.900 17 N -0.601 5.601 18 C 0.521 3.479 19 O -0.509 6.509 20 C 0.038 3.962 21 H 0.095 0.905 22 C 0.032 3.968 23 O -0.374 6.374 24 C 0.021 3.979 25 C 0.022 3.978 26 O -0.348 6.348 27 C 0.124 3.876 28 C 0.042 3.958 29 H 0.274 0.726 30 H 0.371 0.629 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.696 -15.912 -4.444 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.435 4.435 8 H 0.135 0.865 9 N -0.225 5.225 10 C 0.199 3.801 11 O -0.458 6.458 12 C -0.085 4.085 13 N -0.257 5.257 14 C -0.057 4.057 15 C -0.169 4.169 16 C -0.023 4.023 17 N -0.336 5.336 18 C 0.306 3.694 19 O -0.383 6.383 20 C -0.024 4.024 21 H 0.113 0.887 22 C -0.045 4.045 23 O -0.292 6.292 24 C -0.056 4.056 25 C -0.055 4.055 26 O -0.266 6.266 27 C 0.001 3.999 28 C -0.088 4.088 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.133 0.867 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.129 0.871 44 H 0.083 0.917 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.295 -16.480 -3.814 23.487 hybrid contribution -0.487 1.534 -0.086 1.612 sum 15.808 -14.946 -3.900 22.102 Atomic orbital electron populations 1.69632 1.05711 1.27559 1.49026 1.25077 0.95509 0.98070 0.97520 0.86653 0.79813 0.83941 0.78887 1.19604 1.20151 1.19412 1.19446 0.79476 0.96556 1.48063 0.86460 1.42371 1.07581 1.06441 1.66060 1.21068 0.90016 0.84632 0.84400 1.90544 1.69843 1.30683 1.54714 1.22111 0.92092 0.90891 1.03429 1.58906 1.61936 1.02171 1.02676 1.21452 0.96728 0.96668 0.90882 1.21971 1.00913 0.93678 1.00328 1.22335 0.98924 0.98825 0.82177 1.47699 1.34955 1.37489 1.13443 1.19884 0.79991 0.81336 0.88163 1.90735 1.57456 1.68818 1.21248 1.22586 0.89146 0.93882 0.96770 0.88747 1.23350 0.95303 0.89579 0.96272 1.88111 1.45519 1.52934 1.42663 1.23330 0.87093 0.95068 1.00080 1.23357 0.96283 0.89893 0.95986 1.88262 1.43689 1.52981 1.41666 1.21581 0.97768 0.88317 0.92258 1.21827 1.01196 0.94403 0.91374 0.91579 0.79663 0.89360 0.89279 0.92206 0.91486 0.90348 0.90101 0.91305 0.90232 0.86688 0.91501 0.87411 0.91862 0.87113 0.91681 0.89593 0.90049 0.91333 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.93 13.96 55.50 0.77 -25.15 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.31 -8.72 10.16 -14.93 -0.15 -8.88 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 9 N -0.59 -13.88 5.09 -10.96 -0.06 -13.93 16 10 C 0.41 9.16 7.24 -10.99 -0.08 9.08 16 11 O -0.57 -14.99 12.15 5.55 0.07 -14.93 16 12 C 0.05 0.74 5.58 -4.98 -0.03 0.71 16 13 N -0.53 -7.95 3.99 -240.94 -0.96 -8.91 16 14 C 0.07 1.02 4.21 -5.07 -0.02 0.99 16 15 C -0.13 -1.27 5.79 -26.99 -0.16 -1.43 16 16 C 0.10 0.92 4.63 -2.82 -0.01 0.91 16 17 N -0.60 -7.71 2.17 -172.22 -0.37 -8.09 16 18 C 0.52 8.16 7.06 -10.98 -0.08 8.08 16 19 O -0.51 -10.27 15.94 -14.25 -0.23 -10.49 16 20 C 0.04 0.50 2.41 -27.81 -0.07 0.43 16 21 H 0.10 1.19 7.14 -51.93 -0.37 0.82 16 22 C 0.03 0.32 5.92 37.23 0.22 0.54 16 23 O -0.37 -3.83 10.85 -48.80 -0.53 -4.36 16 24 C 0.02 0.18 7.05 37.23 0.26 0.44 16 25 C 0.02 0.22 7.05 37.23 0.26 0.48 16 26 O -0.35 -5.20 10.03 -62.51 -0.63 -5.82 16 27 C 0.12 1.62 5.51 -3.97 -0.02 1.60 16 28 C 0.04 0.67 4.93 -5.74 -0.03 0.64 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 30 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 31 H 0.09 1.26 7.92 -51.93 -0.41 0.85 16 32 H 0.09 1.23 7.93 -51.93 -0.41 0.82 16 33 H 0.06 1.09 6.32 -51.93 -0.33 0.76 16 34 H 0.07 0.98 7.57 -51.93 -0.39 0.59 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.76 7.98 -51.93 -0.41 0.34 16 37 H 0.07 0.46 7.70 -51.93 -0.40 0.06 16 38 H 0.08 0.68 5.00 -51.93 -0.26 0.42 16 39 H 0.12 0.87 5.32 -51.93 -0.28 0.59 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.19 7.28 -51.93 -0.38 0.81 16 46 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 47 H 0.07 1.48 6.00 -51.93 -0.31 1.16 16 48 H 0.07 1.12 7.85 -51.93 -0.41 0.72 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -36.90 368.12 -8.21 -45.11 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -7.11 Total: 11.69 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 0.00 Total: 14.66 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.62 Total: -56.09 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -1.32 Total: -35.61 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.90 -8.21 -45.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194882443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.293 kcal (2) G-P(sol) polarization free energy of solvation -36.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds