Wall clock time and date at job start Sat Apr 11 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 119.99978 * 2 1 4 4 H 1.48504 * 109.46690 * 269.99917 * 3 2 1 5 5 H 1.48493 * 109.47192 * 29.99920 * 3 2 1 6 6 H 1.48498 * 109.46801 * 150.00109 * 3 2 1 7 7 C 1.38950 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00321 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99698 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99924 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99670 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99811 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47180 * 179.97438 * 12 10 9 14 14 C 1.46202 * 110.99636 * 64.98996 * 13 12 10 15 15 C 1.51273 * 109.10092 * 144.77676 * 14 13 12 16 16 C 1.54177 * 109.77954 * 92.30801 * 15 14 13 17 17 N 1.47611 * 111.09093 * 320.23860 * 16 15 14 18 18 C 1.34778 * 118.74518 * 138.19802 * 17 16 15 19 19 O 1.21276 * 120.00297 * 179.73781 * 18 17 16 20 20 C 1.50705 * 119.99640 * 359.73621 * 18 17 16 21 21 H 1.08996 * 109.57894 * 305.15934 * 20 18 17 22 22 C 1.53143 * 109.52412 * 65.32741 * 20 18 17 23 23 O 1.43073 * 109.14759 * 175.21431 * 22 20 18 24 24 C 1.43075 * 113.59236 * 302.04125 * 23 22 20 25 25 C 1.53143 * 109.14823 * 57.95910 * 24 23 22 26 26 O 1.43073 * 109.15100 * 304.68541 * 25 24 23 27 27 C 1.44878 * 122.50891 * 317.92533 * 17 16 15 28 28 C 1.41441 * 111.00051 * 293.95904 * 13 12 10 29 29 H 0.97001 * 119.99909 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99743 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46901 * 59.99900 * 12 10 9 32 32 H 1.08995 * 109.47354 * 300.00055 * 12 10 9 33 33 H 1.09007 * 109.53160 * 264.65713 * 14 13 12 34 34 H 1.08996 * 109.53371 * 24.81001 * 14 13 12 35 35 H 1.08998 * 109.44218 * 212.45430 * 15 14 13 36 36 H 1.09002 * 109.44397 * 332.38793 * 15 14 13 37 37 H 1.08997 * 109.31363 * 199.77544 * 16 15 14 38 38 H 1.08996 * 109.12092 * 80.58633 * 16 15 14 39 39 H 1.08996 * 109.52097 * 295.11334 * 22 20 18 40 40 H 1.08995 * 109.52375 * 55.31093 * 22 20 18 41 41 H 1.09004 * 109.52835 * 177.85434 * 24 23 22 42 42 H 1.08995 * 109.53001 * 297.99194 * 24 23 22 43 43 H 1.09006 * 109.52544 * 184.78090 * 25 24 23 44 44 H 1.09001 * 109.52898 * 64.59125 * 25 24 23 45 45 H 1.09006 * 109.43812 * 210.06788 * 27 17 16 46 46 H 1.08995 * 109.43674 * 329.98174 * 27 17 16 47 47 H 1.08995 * 109.38832 * 71.52501 * 28 13 12 48 48 H 1.08998 * 109.38704 * 311.83439 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0504 -3.7556 0.0017 14 6 5.6810 -4.4424 -1.2350 15 6 6.7905 -5.3947 -1.6227 16 6 6.5105 -6.7906 -1.0310 17 7 5.9632 -6.6880 0.3361 18 6 4.9470 -7.4995 0.6900 19 8 4.4831 -7.4378 1.8088 20 6 4.3872 -8.4836 -0.3046 21 1 4.0880 -7.9569 -1.2108 22 6 5.4540 -9.5274 -0.6478 23 8 4.8811 -10.5199 -1.5044 24 6 3.7449 -11.1790 -0.9372 25 6 2.6781 -10.1352 -0.5941 26 8 3.2509 -9.1427 0.2625 27 6 6.4805 -5.7522 1.3137 28 6 5.7138 -4.4117 1.2087 29 1 -0.4850 0.8401 -0.0004 30 1 3.8649 -0.3633 0.0007 31 1 5.9240 -1.8567 0.8911 32 1 5.9240 -1.8568 -0.8889 33 1 4.7584 -5.0018 -1.0795 34 1 5.5338 -3.7100 -2.0286 35 1 6.8449 -5.4653 -2.7091 36 1 7.7393 -5.0235 -1.2352 37 1 7.4380 -7.3625 -1.0020 38 1 5.7920 -7.3097 -1.6652 39 1 6.2868 -9.0431 -1.1575 40 1 5.8105 -9.9986 0.2681 41 1 3.3398 -11.8908 -1.6566 42 1 4.0442 -11.7066 -0.0316 43 1 1.8451 -10.6196 -0.0843 44 1 2.3214 -9.6641 -1.5100 45 1 6.3531 -6.1655 2.3143 46 1 7.5399 -5.5791 1.1249 47 1 4.6415 -4.6058 1.2282 48 1 5.9802 -3.7756 2.0527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194882443.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:45 Heat of formation + Delta-G solvation = -152.285558 kcal Electronic energy + Delta-G solvation = -31859.588565 eV Core-core repulsion = 27528.763703 eV Total energy + Delta-G solvation = -4330.824861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.05897 -41.02204 -40.15117 -38.63417 -37.16571 -36.49388 -35.75987 -33.82677 -33.70256 -32.96421 -30.72258 -29.24305 -28.05728 -27.04016 -26.19696 -25.43465 -23.65310 -22.44895 -21.90436 -21.27796 -20.43615 -20.15870 -18.73443 -18.20387 -17.83888 -17.67150 -17.31577 -17.13435 -16.77623 -16.59982 -16.40300 -16.25661 -15.92252 -15.80297 -15.58151 -15.09645 -14.79349 -14.63491 -14.51779 -14.35327 -14.31569 -13.95684 -13.58746 -13.16672 -13.15151 -12.95950 -12.76476 -12.65798 -12.47798 -12.39778 -12.28869 -12.03690 -11.99223 -11.81760 -11.79463 -11.57020 -11.46889 -10.94173 -10.84555 -10.35630 -10.28422 -9.73194 -9.05834 -8.46615 -6.07881 1.26690 1.32202 1.33920 1.41767 1.66659 1.90503 2.19214 2.57090 2.70075 2.91866 2.97883 3.10461 3.25292 3.41960 3.68794 3.80515 3.88827 3.99676 4.04974 4.13106 4.17435 4.19893 4.22227 4.31559 4.39509 4.43059 4.49287 4.54557 4.62863 4.69023 4.71513 4.73380 4.77629 4.87789 4.91186 5.11195 5.20598 5.36769 5.48356 5.59740 5.79871 5.80576 5.88052 6.01446 6.17420 6.38508 6.53777 6.83765 7.01490 7.34612 7.92808 8.71615 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.002988 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.067752 B = 9369.941186 C =10345.631963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.018 4.018 3 Si 0.970 3.030 4 H -0.253 1.253 5 H -0.276 1.276 6 H -0.229 1.229 7 C -0.330 4.330 8 H 0.045 0.955 9 N -0.589 5.589 10 C 0.413 3.587 11 O -0.620 6.620 12 C 0.053 3.947 13 N -0.512 5.512 14 C 0.067 3.933 15 C -0.118 4.118 16 C 0.090 3.910 17 N -0.594 5.594 18 C 0.509 3.491 19 O -0.571 6.571 20 C 0.038 3.962 21 H 0.093 0.907 22 C 0.044 3.956 23 O -0.379 6.379 24 C 0.023 3.977 25 C 0.013 3.987 26 O -0.391 6.391 27 C 0.129 3.871 28 C 0.045 3.955 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.011 0.989 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.145 0.855 40 H 0.065 0.935 41 H 0.138 0.862 42 H 0.067 0.933 43 H 0.125 0.875 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.123 0.877 47 H 0.003 0.997 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.708 -15.076 -6.129 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.216 4.216 3 Si 0.789 3.211 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.153 1.153 7 C -0.460 4.460 8 H 0.064 0.936 9 N -0.231 5.231 10 C 0.200 3.800 11 O -0.506 6.506 12 C -0.079 4.079 13 N -0.233 5.233 14 C -0.061 4.061 15 C -0.156 4.156 16 C -0.031 4.031 17 N -0.327 5.327 18 C 0.297 3.703 19 O -0.450 6.450 20 C -0.024 4.024 21 H 0.111 0.889 22 C -0.033 4.033 23 O -0.298 6.298 24 C -0.053 4.053 25 C -0.063 4.063 26 O -0.310 6.310 27 C 0.006 3.994 28 C -0.085 4.085 29 H 0.089 0.911 30 H 0.226 0.774 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.030 0.970 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.162 0.838 40 H 0.084 0.916 41 H 0.156 0.844 42 H 0.086 0.914 43 H 0.143 0.857 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.141 0.859 47 H 0.021 0.979 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 21.367 -15.668 -5.551 27.071 hybrid contribution -2.170 1.139 0.418 2.486 sum 19.197 -14.529 -5.133 24.616 Atomic orbital electron populations 1.69828 1.08346 1.29346 1.50199 1.26220 0.96514 1.02998 0.95866 0.85301 0.79440 0.76224 0.80126 1.17764 1.20100 1.15253 1.18961 0.81924 0.94564 1.50542 0.93638 1.42210 1.05653 1.07967 1.67230 1.22548 0.92911 0.83305 0.81227 1.90566 1.71835 1.32551 1.55607 1.22361 0.86438 0.92435 1.06627 1.59165 1.60059 1.01706 1.02392 1.21557 0.96871 0.97166 0.90497 1.21928 0.99296 0.92171 1.02216 1.22730 1.00840 0.99527 0.79954 1.47856 1.33850 1.36126 1.14893 1.20513 0.80046 0.81916 0.87864 1.90689 1.59581 1.70868 1.23855 1.22666 0.89853 0.94401 0.95433 0.88908 1.23352 0.94593 0.88692 0.96674 1.88101 1.45929 1.52766 1.42960 1.23466 0.86054 0.94605 1.01204 1.23644 0.97389 0.89669 0.95626 1.88203 1.44759 1.54360 1.43701 1.21550 0.99256 0.86471 0.92094 1.21758 0.97737 0.96596 0.92449 0.91115 0.77387 0.86349 0.85498 0.97043 0.91722 0.87461 0.88164 0.86816 0.89766 0.83776 0.91647 0.84381 0.91447 0.85737 0.91643 0.90980 0.85856 0.97853 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.02 13.96 21.66 0.30 -57.72 16 2 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 3 Si 0.97 39.34 27.74 68.60 1.90 41.24 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.23 -7.78 6.52 99.48 0.65 -7.13 16 7 C -0.33 -19.95 10.16 84.04 0.85 -19.10 16 8 H 0.05 3.32 7.39 -2.91 -0.02 3.30 16 9 N -0.59 -28.20 5.09 -306.99 -1.56 -29.76 16 10 C 0.41 18.67 7.24 87.65 0.63 19.31 16 11 O -0.62 -34.86 12.15 -3.06 -0.04 -34.90 16 12 C 0.05 1.56 5.58 85.56 0.48 2.03 16 13 N -0.51 -14.26 3.99 -916.20 -3.66 -17.92 16 14 C 0.07 1.84 4.21 85.87 0.36 2.21 16 15 C -0.12 -1.83 5.79 30.43 0.18 -1.65 16 16 C 0.09 1.37 4.63 86.57 0.40 1.77 16 17 N -0.59 -14.88 2.17 -817.16 -1.78 -16.65 16 18 C 0.51 16.80 7.06 87.66 0.62 17.42 16 19 O -0.57 -25.08 15.94 15.93 0.25 -24.83 16 20 C 0.04 1.03 2.41 29.90 0.07 1.10 16 21 H 0.09 2.46 7.14 -2.39 -0.02 2.44 16 22 C 0.04 0.81 5.92 72.03 0.43 1.24 16 23 O -0.38 -7.05 10.85 -136.00 -1.48 -8.52 16 24 C 0.02 0.36 7.05 72.03 0.51 0.87 16 25 C 0.01 0.27 7.05 72.03 0.51 0.77 16 26 O -0.39 -12.47 10.03 -122.90 -1.23 -13.70 16 27 C 0.13 3.26 5.51 87.29 0.48 3.74 16 28 C 0.04 1.45 4.93 87.91 0.43 1.88 16 29 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 30 H 0.39 15.32 5.76 -92.71 -0.53 14.78 16 31 H 0.12 2.89 7.92 -2.38 -0.02 2.87 16 32 H 0.13 2.91 7.93 -2.39 -0.02 2.89 16 33 H 0.01 0.42 6.32 -2.38 -0.02 0.41 16 34 H 0.06 1.79 7.57 -2.39 -0.02 1.78 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.10 1.27 7.98 -2.39 -0.02 1.25 16 37 H 0.11 0.85 7.70 -2.39 -0.02 0.83 16 38 H 0.08 1.24 5.00 -2.39 -0.01 1.22 16 39 H 0.14 1.70 5.32 -2.39 -0.01 1.69 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.07 2.04 7.28 -2.38 -0.02 2.02 16 46 H 0.12 2.11 8.11 -2.39 -0.02 2.09 16 47 H 0.00 0.15 6.00 -2.39 -0.01 0.14 16 48 H 0.08 2.51 7.85 -2.39 -0.02 2.49 16 Total: -1.00 -94.54 368.12 -0.47 -95.01 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: 0.40 Total: 36.71 kcal Atomic # 6 Polarization: 24.63 SS G_CDS: 6.42 Total: 31.05 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -6.69 Total: -122.06 kcal Atomic # 8 Polarization: -79.46 SS G_CDS: -2.49 Total: -81.95 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 1.90 Total: 41.24 kcal Total: -94.54 -0.47 -95.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194882443.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.280 kcal (2) G-P(sol) polarization free energy of solvation -94.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds