Wall clock time and date at job start Sat Apr 11 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 119.99865 * 2 1 4 4 H 1.48498 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47234 * 300.00522 * 3 2 1 6 6 H 1.48510 * 109.47161 * 60.00270 * 3 2 1 7 7 C 1.38946 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00461 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00125 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99912 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99951 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47143 * 180.02562 * 12 10 9 14 14 C 1.46196 * 110.99929 * 64.98926 * 13 12 10 15 15 C 1.51277 * 109.09539 * 144.76570 * 14 13 12 16 16 C 1.53790 * 109.62938 * 92.41272 * 15 14 13 17 17 N 1.47614 * 111.30394 * 319.95875 * 16 15 14 18 18 C 1.34776 * 118.74751 * 138.29482 * 17 16 15 19 19 O 1.21285 * 119.99660 * 174.67742 * 18 17 16 20 20 C 1.50692 * 120.00219 * 354.67676 * 18 17 16 21 21 H 1.08994 * 109.52623 * 46.14716 * 20 18 17 22 22 C 1.53148 * 109.52595 * 285.94915 * 20 18 17 23 23 O 1.43065 * 109.15380 * 184.78490 * 22 20 18 24 24 C 1.43074 * 113.59533 * 57.95383 * 23 22 20 25 25 C 1.53139 * 109.15108 * 302.05001 * 24 23 22 26 26 O 1.43075 * 109.15303 * 55.30887 * 25 24 23 27 27 C 1.44892 * 122.50302 * 318.31690 * 17 16 15 28 28 C 1.41440 * 110.99912 * 293.95298 * 13 12 10 29 29 H 0.96997 * 120.00093 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99367 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47250 * 60.00042 * 12 10 9 32 32 H 1.08999 * 109.47395 * 300.00439 * 12 10 9 33 33 H 1.08999 * 109.53228 * 24.88699 * 14 13 12 34 34 H 1.08989 * 109.53483 * 264.65248 * 14 13 12 35 35 H 1.09005 * 109.44663 * 332.36525 * 15 14 13 36 36 H 1.08997 * 109.44368 * 212.46724 * 15 14 13 37 37 H 1.09001 * 109.11147 * 80.42908 * 16 15 14 38 38 H 1.09001 * 109.11623 * 199.55431 * 16 15 14 39 39 H 1.08998 * 109.52066 * 304.69229 * 22 20 18 40 40 H 1.09006 * 109.52243 * 64.88109 * 22 20 18 41 41 H 1.08996 * 109.53064 * 182.14592 * 24 23 22 42 42 H 1.09003 * 109.57808 * 61.97905 * 24 23 22 43 43 H 1.09005 * 109.52237 * 295.40931 * 25 24 23 44 44 H 1.09005 * 109.53045 * 175.20979 * 25 24 23 45 45 H 1.09000 * 109.43314 * 209.79100 * 27 17 16 46 46 H 1.09005 * 109.43278 * 329.65911 * 27 17 16 47 47 H 1.09004 * 109.38440 * 71.52583 * 28 13 12 48 48 H 1.09006 * 109.38756 * 311.84029 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2102 -3.5577 -0.0031 12 6 1.2439 -4.8629 -0.0032 13 7 2.1985 -5.9795 -0.0037 14 6 2.9776 -6.0032 1.2331 15 6 3.2472 -7.4404 1.6207 16 6 4.5945 -7.8904 1.0313 17 7 4.7817 -7.3702 -0.3374 18 6 5.9927 -6.8956 -0.6905 19 8 6.1993 -6.5526 -1.8353 20 6 7.0900 -6.7912 0.3371 21 1 7.1369 -7.7141 0.9150 22 6 6.8040 -5.6135 1.2734 23 8 7.9037 -5.4523 2.1742 24 6 9.1557 -5.2357 1.5166 25 6 9.4417 -6.4133 0.5804 26 8 8.3420 -6.5746 -0.3206 27 6 3.7129 -7.3499 -1.3155 28 6 2.9354 -6.0158 -1.2105 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3906 -0.0016 31 1 0.6169 -4.9201 -0.8930 32 1 0.6175 -4.9213 0.8869 33 1 2.4160 -5.5110 2.0271 34 1 3.9233 -5.4840 1.0782 35 1 2.4511 -8.0763 1.2331 36 1 3.2804 -7.5232 2.7070 37 1 5.4017 -7.5244 1.6658 38 1 4.6269 -8.9797 1.0056 39 1 6.6776 -4.7039 0.6863 40 1 5.8944 -5.8115 1.8405 41 1 9.9494 -5.1601 2.2598 42 1 9.1096 -4.3132 0.9379 43 1 9.5681 -7.3230 1.1674 44 1 10.3513 -6.2153 0.0131 45 1 4.1350 -7.4460 -2.3159 46 1 3.0336 -8.1814 -1.1277 47 1 3.6396 -5.1840 -1.2296 48 1 2.2515 -5.9282 -2.0548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194882444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:48 Heat of formation + Delta-G solvation = -129.968704 kcal Electronic energy + Delta-G solvation = -32243.450571 eV Core-core repulsion = 27913.593441 eV Total energy + Delta-G solvation = -4329.857130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.95275 -39.66900 -38.69901 -37.15431 -36.12229 -35.07945 -33.80535 -32.71773 -31.91054 -31.31082 -29.46052 -28.13696 -26.64884 -25.74536 -25.06046 -24.01877 -22.53555 -21.56297 -20.65881 -19.33500 -19.06486 -17.95450 -17.64361 -17.07016 -16.84917 -16.46127 -16.03342 -15.73727 -15.54285 -15.35873 -15.05458 -14.92366 -14.68132 -14.27876 -13.89351 -13.75164 -13.63222 -13.51482 -13.29946 -13.24941 -12.69679 -12.41683 -12.08808 -11.83965 -11.78685 -11.57420 -11.49786 -11.29797 -11.14434 -11.12386 -10.93449 -10.79605 -10.72325 -10.52422 -10.37517 -10.26924 -9.67422 -9.53649 -9.37058 -9.07612 -8.62214 -8.01135 -7.46927 -6.46053 -3.87165 2.52123 2.65103 3.12618 3.24108 3.31335 3.50324 3.62630 3.83561 4.13721 4.21655 4.31868 4.37110 4.64333 4.70923 4.77697 4.86485 4.91105 4.94461 4.98468 5.13159 5.20274 5.22450 5.36680 5.40915 5.44408 5.50861 5.58474 5.63953 5.69832 5.71584 5.81338 5.94777 5.99495 6.07055 6.08625 6.23433 6.45118 6.46504 6.68408 6.72483 6.80838 7.26610 7.35838 7.50937 7.72588 8.00945 8.16677 8.55323 9.13021 9.49097 9.99569 10.70699 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.003651 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.878563 B = 7666.821770 C = 9201.694943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.928 3.072 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.558 5.558 10 C 0.405 3.595 11 O -0.594 6.594 12 C 0.049 3.951 13 N -0.535 5.535 14 C 0.071 3.929 15 C -0.132 4.132 16 C 0.100 3.900 17 N -0.600 5.600 18 C 0.522 3.478 19 O -0.512 6.512 20 C 0.039 3.961 21 H 0.089 0.911 22 C 0.036 3.964 23 O -0.372 6.372 24 C 0.019 3.981 25 C 0.024 3.976 26 O -0.352 6.352 27 C 0.122 3.878 28 C 0.044 3.956 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.226 -17.298 4.936 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.194 5.194 10 C 0.191 3.809 11 O -0.480 6.480 12 C -0.083 4.083 13 N -0.257 5.257 14 C -0.057 4.057 15 C -0.171 4.171 16 C -0.023 4.023 17 N -0.335 5.335 18 C 0.307 3.693 19 O -0.386 6.386 20 C -0.022 4.022 21 H 0.106 0.894 22 C -0.041 4.041 23 O -0.291 6.291 24 C -0.058 4.058 25 C -0.053 4.053 26 O -0.270 6.270 27 C -0.001 4.001 28 C -0.086 4.086 29 H 0.081 0.919 30 H 0.226 0.774 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.127 0.873 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.784 -17.365 4.296 20.390 hybrid contribution 0.155 1.687 0.077 1.696 sum 9.939 -15.678 4.373 19.071 Atomic orbital electron populations 1.69616 1.05934 1.28141 1.50318 1.25264 0.95610 0.99755 0.97161 0.85830 0.79728 0.81202 0.77779 1.19284 1.20673 1.20681 1.19744 0.93353 0.82399 1.47500 0.88035 1.42025 1.09252 1.04907 1.63187 1.21095 0.88929 0.86010 0.84911 1.90480 1.13856 1.87125 1.56542 1.22068 0.94923 0.87900 1.03373 1.58882 1.22162 1.42191 1.02492 1.21471 0.98469 0.94697 0.91081 1.21936 0.96382 0.98444 1.00347 1.22199 0.99456 0.98541 0.82062 1.47699 1.10090 1.62242 1.13455 1.19897 0.82962 0.77725 0.88679 1.90722 1.81086 1.46830 1.19978 1.22615 0.85989 0.99892 0.93721 0.89384 1.23252 0.90461 0.97609 0.92806 1.88111 1.15894 1.92945 1.32115 1.23311 0.87097 0.98121 0.97275 1.23336 0.90347 0.98222 0.93353 1.88224 1.14344 1.93094 1.31332 1.21610 0.87888 0.98290 0.92329 1.21813 0.97610 0.97626 0.91552 0.91852 0.77434 0.89487 0.89414 0.91485 0.92286 0.90031 0.90348 0.90306 0.91414 0.90605 0.86736 0.87507 0.91630 0.92022 0.87266 0.89540 0.90062 0.91530 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -13.84 5.29 -10.97 -0.06 -13.90 16 10 C 0.41 9.13 7.24 -10.99 -0.08 9.05 16 11 O -0.59 -15.15 12.15 5.55 0.07 -15.08 16 12 C 0.05 0.82 5.58 -4.97 -0.03 0.79 16 13 N -0.53 -8.15 3.99 -240.94 -0.96 -9.11 16 14 C 0.07 1.02 4.21 -5.08 -0.02 1.00 16 15 C -0.13 -1.34 5.78 -27.19 -0.16 -1.49 16 16 C 0.10 0.97 5.54 -3.02 -0.02 0.95 16 17 N -0.60 -7.93 2.18 -172.45 -0.38 -8.31 16 18 C 0.52 8.27 6.93 -10.99 -0.08 8.20 16 19 O -0.51 -10.29 15.96 -13.92 -0.22 -10.51 16 20 C 0.04 0.53 2.38 -27.81 -0.07 0.46 16 21 H 0.09 0.93 7.04 -51.93 -0.37 0.57 16 22 C 0.04 0.50 6.00 37.23 0.22 0.72 16 23 O -0.37 -4.82 10.85 -48.80 -0.53 -5.35 16 24 C 0.02 0.19 7.05 37.23 0.26 0.46 16 25 C 0.02 0.24 7.05 37.23 0.26 0.51 16 26 O -0.35 -5.10 10.06 -62.34 -0.63 -5.72 16 27 C 0.12 1.65 5.56 -3.97 -0.02 1.62 16 28 C 0.04 0.71 4.93 -5.74 -0.03 0.68 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 31 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 32 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 33 H 0.07 1.01 7.57 -51.93 -0.39 0.61 16 34 H 0.06 1.03 5.33 -51.94 -0.28 0.75 16 35 H 0.08 0.81 7.98 -51.93 -0.41 0.39 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.70 4.21 -51.93 -0.22 0.49 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.11 1.46 5.33 -51.93 -0.28 1.18 16 41 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.24 7.22 -51.93 -0.37 0.87 16 46 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 47 H 0.07 1.41 6.00 -51.93 -0.31 1.10 16 48 H 0.07 1.16 7.85 -51.93 -0.41 0.75 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -34.26 370.69 -8.48 -42.75 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -7.08 Total: 12.07 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: 0.01 Total: 15.04 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.67 Total: -54.90 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -1.31 Total: -36.67 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.26 -8.48 -42.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194882444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.220 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds