Wall clock time and date at job start Sat Apr 11 2020 06:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 119.99865 * 2 1 4 4 H 1.48498 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47234 * 300.00522 * 3 2 1 6 6 H 1.48510 * 109.47161 * 60.00270 * 3 2 1 7 7 C 1.38946 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00461 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00125 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99912 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99951 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47143 * 180.02562 * 12 10 9 14 14 C 1.46196 * 110.99929 * 64.98926 * 13 12 10 15 15 C 1.51277 * 109.09539 * 144.76570 * 14 13 12 16 16 C 1.53790 * 109.62938 * 92.41272 * 15 14 13 17 17 N 1.47614 * 111.30394 * 319.95875 * 16 15 14 18 18 C 1.34776 * 118.74751 * 138.29482 * 17 16 15 19 19 O 1.21285 * 119.99660 * 174.67742 * 18 17 16 20 20 C 1.50692 * 120.00219 * 354.67676 * 18 17 16 21 21 H 1.08994 * 109.52623 * 46.14716 * 20 18 17 22 22 C 1.53148 * 109.52595 * 285.94915 * 20 18 17 23 23 O 1.43065 * 109.15380 * 184.78490 * 22 20 18 24 24 C 1.43074 * 113.59533 * 57.95383 * 23 22 20 25 25 C 1.53139 * 109.15108 * 302.05001 * 24 23 22 26 26 O 1.43075 * 109.15303 * 55.30887 * 25 24 23 27 27 C 1.44892 * 122.50302 * 318.31690 * 17 16 15 28 28 C 1.41440 * 110.99912 * 293.95298 * 13 12 10 29 29 H 0.96997 * 120.00093 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99367 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47250 * 60.00042 * 12 10 9 32 32 H 1.08999 * 109.47395 * 300.00439 * 12 10 9 33 33 H 1.08999 * 109.53228 * 24.88699 * 14 13 12 34 34 H 1.08989 * 109.53483 * 264.65248 * 14 13 12 35 35 H 1.09005 * 109.44663 * 332.36525 * 15 14 13 36 36 H 1.08997 * 109.44368 * 212.46724 * 15 14 13 37 37 H 1.09001 * 109.11147 * 80.42908 * 16 15 14 38 38 H 1.09001 * 109.11623 * 199.55431 * 16 15 14 39 39 H 1.08998 * 109.52066 * 304.69229 * 22 20 18 40 40 H 1.09006 * 109.52243 * 64.88109 * 22 20 18 41 41 H 1.08996 * 109.53064 * 182.14592 * 24 23 22 42 42 H 1.09003 * 109.57808 * 61.97905 * 24 23 22 43 43 H 1.09005 * 109.52237 * 295.40931 * 25 24 23 44 44 H 1.09005 * 109.53045 * 175.20979 * 25 24 23 45 45 H 1.09000 * 109.43314 * 209.79100 * 27 17 16 46 46 H 1.09005 * 109.43278 * 329.65911 * 27 17 16 47 47 H 1.09004 * 109.38440 * 71.52583 * 28 13 12 48 48 H 1.09006 * 109.38756 * 311.84029 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2102 -3.5577 -0.0031 12 6 1.2439 -4.8629 -0.0032 13 7 2.1985 -5.9795 -0.0037 14 6 2.9776 -6.0032 1.2331 15 6 3.2472 -7.4404 1.6207 16 6 4.5945 -7.8904 1.0313 17 7 4.7817 -7.3702 -0.3374 18 6 5.9927 -6.8956 -0.6905 19 8 6.1993 -6.5526 -1.8353 20 6 7.0900 -6.7912 0.3371 21 1 7.1369 -7.7141 0.9150 22 6 6.8040 -5.6135 1.2734 23 8 7.9037 -5.4523 2.1742 24 6 9.1557 -5.2357 1.5166 25 6 9.4417 -6.4133 0.5804 26 8 8.3420 -6.5746 -0.3206 27 6 3.7129 -7.3499 -1.3155 28 6 2.9354 -6.0158 -1.2105 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3906 -0.0016 31 1 0.6169 -4.9201 -0.8930 32 1 0.6175 -4.9213 0.8869 33 1 2.4160 -5.5110 2.0271 34 1 3.9233 -5.4840 1.0782 35 1 2.4511 -8.0763 1.2331 36 1 3.2804 -7.5232 2.7070 37 1 5.4017 -7.5244 1.6658 38 1 4.6269 -8.9797 1.0056 39 1 6.6776 -4.7039 0.6863 40 1 5.8944 -5.8115 1.8405 41 1 9.9494 -5.1601 2.2598 42 1 9.1096 -4.3132 0.9379 43 1 9.5681 -7.3230 1.1674 44 1 10.3513 -6.2153 0.0131 45 1 4.1350 -7.4460 -2.3159 46 1 3.0336 -8.1814 -1.1277 47 1 3.6396 -5.1840 -1.2296 48 1 2.2515 -5.9282 -2.0548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194882444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:47 Heat of formation + Delta-G solvation = -156.744426 kcal Electronic energy + Delta-G solvation = -32244.611653 eV Core-core repulsion = 27913.593441 eV Total energy + Delta-G solvation = -4331.018213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.06862 -40.93828 -40.11237 -38.59406 -37.16835 -36.45595 -35.68852 -33.76011 -33.34389 -32.90637 -30.67582 -29.25449 -27.94264 -27.07739 -26.27517 -25.51998 -23.61608 -22.56837 -21.92490 -20.96080 -20.25689 -19.87834 -18.75946 -18.20292 -17.95464 -17.72317 -17.33640 -16.92599 -16.69885 -16.61848 -16.39810 -16.30481 -15.96027 -15.77081 -15.53346 -15.27002 -14.80831 -14.67023 -14.46734 -14.35647 -13.99262 -13.60923 -13.36883 -13.31928 -13.10673 -12.99105 -12.81873 -12.70003 -12.47325 -12.38039 -12.26382 -12.18092 -11.98270 -11.80696 -11.77216 -11.62495 -11.46770 -10.84958 -10.82688 -10.38537 -10.03484 -9.71489 -9.01640 -8.49817 -5.99538 1.30002 1.32033 1.35611 1.48938 1.64370 2.01204 2.24938 2.52536 2.69732 2.97285 3.16129 3.25804 3.30470 3.33871 3.67133 3.81339 3.86884 3.98828 4.02247 4.13367 4.15817 4.22319 4.31236 4.35681 4.37554 4.43911 4.50944 4.57296 4.66801 4.68926 4.71571 4.74773 4.78074 4.89333 4.92983 5.11486 5.20893 5.35936 5.38318 5.59759 5.74167 5.80980 5.90243 6.07118 6.18479 6.42805 6.56177 7.00480 7.09157 7.53151 8.09075 8.65681 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.003651 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.878563 B = 7666.821770 C = 9201.694943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.987 3.013 4 H -0.280 1.280 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.332 4.332 8 H 0.071 0.929 9 N -0.571 5.571 10 C 0.405 3.595 11 O -0.626 6.626 12 C 0.056 3.944 13 N -0.514 5.514 14 C 0.066 3.934 15 C -0.120 4.120 16 C 0.093 3.907 17 N -0.595 5.595 18 C 0.511 3.489 19 O -0.570 6.570 20 C 0.048 3.952 21 H 0.127 0.873 22 C 0.047 3.953 23 O -0.378 6.378 24 C 0.011 3.989 25 C 0.021 3.979 26 O -0.386 6.386 27 C 0.129 3.871 28 C 0.048 3.952 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.023 0.977 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.028 0.972 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.130 0.870 45 H 0.073 0.927 46 H 0.118 0.882 47 H 0.009 0.991 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.975 -19.756 6.773 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.209 4.209 3 Si 0.811 3.189 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.462 4.462 8 H 0.089 0.911 9 N -0.208 5.208 10 C 0.192 3.808 11 O -0.514 6.514 12 C -0.075 4.075 13 N -0.236 5.236 14 C -0.062 4.062 15 C -0.158 4.158 16 C -0.028 4.028 17 N -0.328 5.328 18 C 0.298 3.702 19 O -0.448 6.448 20 C -0.013 4.013 21 H 0.144 0.856 22 C -0.031 4.031 23 O -0.297 6.297 24 C -0.065 4.065 25 C -0.055 4.055 26 O -0.305 6.305 27 C 0.006 3.994 28 C -0.082 4.082 29 H 0.088 0.912 30 H 0.230 0.770 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.046 0.954 40 H 0.141 0.859 41 H 0.161 0.839 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.147 0.853 45 H 0.091 0.909 46 H 0.136 0.864 47 H 0.027 0.973 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.506 -19.858 6.181 22.867 hybrid contribution 0.290 2.439 -0.471 2.501 sum 9.796 -17.419 5.710 20.784 Atomic orbital electron populations 1.69662 1.06628 1.29212 1.50257 1.25949 0.96498 1.02157 0.96327 0.84969 0.77782 0.77607 0.78554 1.20476 1.19553 1.19165 1.19591 0.92335 0.84410 1.49858 0.91145 1.42091 1.09332 1.04907 1.64513 1.22309 0.88853 0.87359 0.82269 1.90494 1.15869 1.87945 1.57069 1.22194 0.95012 0.84740 1.05575 1.59116 1.21727 1.40227 1.02500 1.21591 0.96462 0.97768 0.90357 1.21884 0.96815 0.94863 1.02268 1.22544 0.99655 1.00667 0.79920 1.47861 1.09062 1.60974 1.14861 1.20509 0.84290 0.76917 0.88495 1.90681 1.82300 1.49457 1.22396 1.22609 0.85124 1.00881 0.92732 0.85572 1.23032 0.91482 0.95972 0.92624 1.88094 1.16491 1.92911 1.32156 1.23581 0.86842 0.97731 0.98323 1.23626 0.89606 0.98992 0.93263 1.88186 1.15475 1.93343 1.33536 1.21533 0.88123 0.97596 0.92193 1.21727 0.96748 0.97381 0.92339 0.91239 0.76962 0.87499 0.86700 0.92067 0.95836 0.88608 0.87369 0.89477 0.87537 0.95358 0.85869 0.83902 0.93499 0.89397 0.85266 0.90906 0.86359 0.97302 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.77 13.05 21.66 0.28 -49.49 16 2 C -0.01 -0.50 5.50 84.92 0.47 -0.03 16 3 Si 0.99 44.06 29.55 68.60 2.03 46.09 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 8 H 0.07 4.43 7.16 -2.91 -0.02 4.41 16 9 N -0.57 -29.32 5.29 -306.99 -1.62 -30.95 16 10 C 0.41 18.89 7.24 87.66 0.63 19.52 16 11 O -0.63 -34.00 12.15 -3.06 -0.04 -34.04 16 12 C 0.06 1.84 5.58 85.56 0.48 2.32 16 13 N -0.51 -15.12 3.99 -916.20 -3.66 -18.78 16 14 C 0.07 1.84 4.21 85.87 0.36 2.20 16 15 C -0.12 -1.98 5.78 30.30 0.18 -1.80 16 16 C 0.09 1.49 5.54 86.43 0.48 1.96 16 17 N -0.59 -15.16 2.18 -817.89 -1.79 -16.95 16 18 C 0.51 16.61 6.93 87.65 0.61 17.22 16 19 O -0.57 -24.38 15.96 15.57 0.25 -24.13 16 20 C 0.05 1.26 2.38 29.89 0.07 1.33 16 21 H 0.13 2.33 7.04 -2.39 -0.02 2.31 16 22 C 0.05 1.33 6.00 72.03 0.43 1.76 16 23 O -0.38 -9.62 10.85 -136.00 -1.48 -11.09 16 24 C 0.01 0.23 7.05 72.03 0.51 0.74 16 25 C 0.02 0.39 7.05 72.03 0.51 0.89 16 26 O -0.39 -11.24 10.06 -123.06 -1.24 -12.48 16 27 C 0.13 3.38 5.56 87.29 0.48 3.86 16 28 C 0.05 1.60 4.93 87.90 0.43 2.03 16 29 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 30 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 31 H 0.11 3.14 7.93 -2.38 -0.02 3.12 16 32 H 0.12 3.22 7.93 -2.39 -0.02 3.20 16 33 H 0.06 1.77 7.57 -2.39 -0.02 1.75 16 34 H 0.02 0.84 5.33 -2.39 -0.01 0.82 16 35 H 0.10 1.40 7.98 -2.38 -0.02 1.38 16 36 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.28 4.21 -2.39 -0.01 1.27 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.12 3.19 5.33 -2.38 -0.01 3.18 16 41 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.13 1.79 8.14 -2.38 -0.02 1.78 16 45 H 0.07 2.14 7.22 -2.39 -0.02 2.12 16 46 H 0.12 2.26 8.11 -2.38 -0.02 2.24 16 47 H 0.01 0.40 6.00 -2.38 -0.01 0.39 16 48 H 0.08 2.50 7.85 -2.38 -0.02 2.48 16 Total: -1.00 -81.65 370.69 -0.54 -82.19 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: 0.26 Total: 35.97 kcal Atomic # 6 Polarization: 27.19 SS G_CDS: 6.45 Total: 33.64 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -6.78 Total: -116.16 kcal Atomic # 8 Polarization: -79.24 SS G_CDS: -2.50 Total: -81.74 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -81.65 -0.54 -82.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194882444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.551 kcal (2) G-P(sol) polarization free energy of solvation -81.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds