Wall clock time and date at job start Sat Apr 11 2020 06:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00020 * 2 1 4 4 H 1.48500 * 109.47141 * 240.00057 * 3 2 1 5 5 H 1.48506 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47084 * 120.00373 * 3 2 1 7 7 C 1.38810 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99770 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00381 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00382 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47320 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46801 * 304.99249 * 11 10 9 13 13 C 1.54803 * 109.46772 * 185.00111 * 11 10 9 14 14 N 1.45127 * 109.53073 * 172.10285 * 13 11 10 15 15 C 1.34772 * 118.75778 * 269.29248 * 14 13 11 16 16 O 1.21284 * 120.00239 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99851 * 179.97438 * 15 14 13 18 18 N 1.46505 * 109.47422 * 180.02562 * 17 15 14 19 19 C 1.46076 * 118.71508 * 270.24949 * 18 17 15 20 20 C 1.53019 * 109.99071 * 161.87499 * 19 18 17 21 21 O 1.43239 * 108.66909 * 48.93979 * 20 19 18 22 22 C 1.42975 * 112.98993 * 291.64050 * 21 20 19 23 23 C 1.33864 * 118.73076 * 89.99610 * 18 17 15 24 24 O 1.21283 * 118.83714 * 1.86926 * 23 18 17 25 25 C 1.47507 * 122.48467 * 89.56707 * 14 13 11 26 26 C 1.53956 * 110.81967 * 317.98117 * 25 14 13 27 27 C 1.51533 * 109.72795 * 320.30373 * 26 25 14 28 28 O 1.38008 * 109.47022 * 64.98693 * 11 10 9 29 29 H 0.97003 * 119.99895 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99966 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46827 * 60.00044 * 10 9 7 32 32 H 1.09005 * 109.46806 * 300.00436 * 10 9 7 33 33 H 1.09008 * 109.46307 * 52.09209 * 13 11 10 34 34 H 1.08993 * 109.45539 * 292.11356 * 13 11 10 35 35 H 1.08996 * 109.47497 * 59.99992 * 17 15 14 36 36 H 1.09001 * 109.47462 * 300.00243 * 17 15 14 37 37 H 1.09008 * 109.54531 * 41.60090 * 19 18 17 38 38 H 1.08999 * 109.10883 * 281.87352 * 19 18 17 39 39 H 1.09002 * 109.60059 * 289.18730 * 20 19 18 40 40 H 1.09003 * 109.60936 * 168.69583 * 20 19 18 41 41 H 1.08997 * 109.41173 * 289.49559 * 22 21 20 42 42 H 1.08998 * 109.36198 * 169.66521 * 22 21 20 43 43 H 1.09000 * 109.16616 * 78.49663 * 25 14 13 44 44 H 1.08998 * 109.17279 * 197.70019 * 25 14 13 45 45 H 1.08997 * 109.45689 * 200.17311 * 26 25 14 46 46 H 1.09001 * 109.27681 * 80.32120 * 26 25 14 47 47 H 1.09007 * 109.58565 * 331.50772 * 27 26 25 48 48 H 1.08998 * 109.58837 * 211.07998 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3794 -4.7130 0.8405 13 6 1.8336 -6.1567 0.1261 14 7 0.8905 -7.2437 0.3132 15 6 0.5425 -7.5915 1.5679 16 8 1.0155 -6.9991 2.5147 17 6 -0.4350 -8.7158 1.7945 18 7 -0.6468 -8.8965 3.2328 19 6 0.2254 -9.8148 3.9607 20 6 0.1490 -9.5294 5.4621 21 8 -1.2292 -9.4522 5.8446 22 6 -1.8947 -8.3069 5.3065 23 6 -1.6286 -8.2099 3.8300 24 8 -2.3317 -7.4879 3.1552 25 6 0.3027 -7.9861 -0.8178 26 6 -0.0928 -7.0272 -1.9555 27 6 -0.6915 -5.7626 -1.3736 28 8 0.3472 -4.8116 -1.1806 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6846 -3.7145 0.8894 32 1 2.6847 -3.7145 -0.8905 33 1 2.5064 -6.1084 0.9824 34 1 2.4123 -6.3302 -0.7812 35 1 -0.0362 -9.6358 1.3672 36 1 -1.3839 -8.4744 1.3154 37 1 1.2532 -9.6887 3.6201 38 1 -0.0959 -10.8387 3.7701 39 1 0.6426 -8.5823 5.6799 40 1 0.6368 -10.3339 6.0127 41 1 -1.5260 -7.4082 5.8009 42 1 -2.9675 -8.3994 5.4760 43 1 1.0308 -8.7072 -1.1896 44 1 -0.5839 -8.5189 -0.4742 45 1 -0.8251 -7.5120 -2.6009 46 1 0.7935 -6.7747 -2.5377 47 1 -1.1630 -5.9882 -0.4170 48 1 -1.4333 -5.3589 -2.0627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200696108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:13 Heat of formation + Delta-G solvation = -116.182328 kcal Electronic energy + Delta-G solvation = -31473.267699 eV Core-core repulsion = 27144.008391 eV Total energy + Delta-G solvation = -4329.259308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26875 -40.28017 -38.47512 -37.93014 -35.74536 -35.59203 -34.55376 -32.83781 -30.98674 -30.82296 -29.94677 -28.52300 -26.94948 -26.17576 -24.83364 -24.20454 -22.64655 -21.72757 -20.92357 -19.83809 -19.04432 -18.08310 -17.79056 -17.40672 -17.10195 -16.45339 -16.32002 -16.20490 -15.94677 -15.50832 -15.15433 -14.92781 -14.48973 -14.38945 -14.12638 -13.94522 -13.75214 -13.54692 -13.45772 -13.05830 -13.01017 -12.62425 -12.49518 -12.19925 -12.11227 -11.98179 -11.75857 -11.62543 -11.36666 -10.95816 -10.89495 -10.77932 -10.72855 -10.26716 -10.19283 -9.98153 -9.76868 -9.63449 -9.38585 -9.06771 -8.78548 -8.58070 -6.80488 -5.64688 -2.93183 2.10101 2.38508 2.43870 2.90302 3.32511 3.51272 3.54545 3.56420 3.93329 3.98629 4.20727 4.31867 4.54605 4.58917 4.61398 4.64866 4.70963 4.80826 4.90147 4.92970 4.98459 5.04573 5.19080 5.24498 5.26078 5.30623 5.36437 5.45062 5.49812 5.61544 5.67690 5.76399 5.85988 5.98944 6.01463 6.13210 6.33666 6.37783 6.47153 6.69139 6.82286 6.93919 7.12860 7.71479 7.77633 8.00592 8.05086 8.53299 9.64461 10.23180 10.59100 11.58156 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.002897 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.948124 B = 9664.220602 C =10806.643087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.167 3.833 11 C 0.089 3.911 12 H 0.051 0.949 13 C 0.082 3.918 14 N -0.608 5.608 15 C 0.492 3.508 16 O -0.524 6.524 17 C 0.091 3.909 18 N -0.589 5.589 19 C 0.084 3.916 20 C 0.043 3.957 21 O -0.371 6.371 22 C 0.052 3.948 23 C 0.493 3.507 24 O -0.533 6.533 25 C 0.104 3.896 26 C -0.166 4.166 27 C 0.072 3.928 28 O -0.368 6.368 29 H 0.255 0.745 30 H 0.387 0.613 31 H 0.033 0.967 32 H 0.027 0.973 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.132 0.868 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.048 0.952 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 -28.876 4.396 29.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.370 5.370 10 C 0.039 3.961 11 C 0.029 3.971 12 H 0.069 0.931 13 C -0.041 4.041 14 N -0.342 5.342 15 C 0.278 3.722 16 O -0.399 6.399 17 C -0.035 4.035 18 N -0.323 5.323 19 C -0.039 4.039 20 C -0.034 4.034 21 O -0.289 6.289 22 C -0.027 4.027 23 C 0.281 3.719 24 O -0.409 6.409 25 C -0.018 4.018 26 C -0.204 4.204 27 C -0.005 4.005 28 O -0.286 6.286 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.135 0.865 41 H 0.113 0.887 42 H 0.150 0.850 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.066 0.934 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.013 -28.078 4.559 28.463 hybrid contribution 0.344 0.804 -0.157 0.888 sum -0.669 -27.274 4.402 27.635 Atomic orbital electron populations 1.69675 1.05103 1.25592 1.57691 1.24743 0.95513 0.97624 1.03169 0.86254 0.78469 0.83600 0.77773 1.21313 1.21726 1.21326 1.19183 0.90943 0.84160 1.42681 0.91257 1.42226 1.06029 0.99498 1.89253 1.20594 0.92389 0.84725 0.98407 1.22258 0.93726 0.93910 0.87226 0.93068 1.22427 0.92040 0.86390 1.03266 1.47957 1.45429 1.35116 1.05708 1.21155 0.82681 0.85268 0.83106 1.90724 1.54100 1.54059 1.41062 1.21441 1.00892 0.98111 0.83097 1.47070 1.32941 1.44123 1.08163 1.22181 0.95450 0.93246 0.93034 1.23011 0.83408 1.03823 0.93137 1.88174 1.23123 1.44757 1.72881 1.22843 1.00697 0.90944 0.88223 1.21030 0.79878 0.79303 0.91676 1.90782 1.47457 1.38196 1.64505 1.22114 0.98206 0.94184 0.87339 1.22568 1.02961 0.97097 0.97788 1.22117 0.89918 0.88389 1.00043 1.86427 1.48055 1.55631 1.38486 0.93551 0.77921 0.94930 0.95536 0.88967 0.89822 0.87450 0.86481 0.89490 0.90487 0.91227 0.86532 0.88711 0.85000 0.91168 0.90162 0.89602 0.89878 0.93368 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.82 13.06 55.49 0.72 -29.09 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 23.39 29.55 -169.99 -5.02 18.37 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -7.10 9.99 -15.06 -0.15 -7.25 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -20.16 5.54 -59.91 -0.33 -20.49 16 10 C 0.17 3.70 5.92 -4.04 -0.02 3.68 16 11 C 0.09 1.68 2.68 -25.78 -0.07 1.61 16 12 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 13 C 0.08 1.20 4.86 -3.83 -0.02 1.18 16 14 N -0.61 -7.40 2.18 -172.23 -0.38 -7.78 16 15 C 0.49 6.57 7.69 -10.99 -0.08 6.48 16 16 O -0.52 -9.13 15.86 5.55 0.09 -9.04 16 17 C 0.09 0.88 4.13 -5.19 -0.02 0.86 16 18 N -0.59 -6.11 2.32 -175.79 -0.41 -6.52 16 19 C 0.08 0.57 6.62 -4.26 -0.03 0.54 16 20 C 0.04 0.29 6.90 37.17 0.26 0.54 16 21 O -0.37 -3.23 10.85 -35.23 -0.38 -3.61 16 22 C 0.05 0.49 6.98 35.84 0.25 0.74 16 23 C 0.49 6.23 7.58 -11.56 -0.09 6.14 16 24 O -0.53 -8.83 16.36 5.55 0.09 -8.74 16 25 C 0.10 0.86 6.04 -2.99 -0.02 0.84 16 26 C -0.17 -1.59 5.79 -26.97 -0.16 -1.74 16 27 C 0.07 1.01 6.38 36.42 0.23 1.24 16 28 O -0.37 -6.85 9.38 -26.51 -0.25 -7.10 16 29 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 30 H 0.39 11.50 7.65 -40.82 -0.31 11.19 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.43 7.27 -51.92 -0.38 1.05 16 34 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 35 H 0.11 0.61 7.93 -51.93 -0.41 0.20 16 36 H 0.12 1.19 6.51 -51.93 -0.34 0.86 16 37 H 0.09 0.55 8.13 -51.92 -0.42 0.13 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.50 5.87 -51.93 -0.31 0.20 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 47 H 0.05 0.72 7.41 -51.92 -0.38 0.33 16 48 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -39.63 386.04 -7.65 -47.28 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.58 Total: 6.58 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -0.02 Total: 14.33 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.39 Total: -63.88 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.45 Total: -28.50 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.63 -7.65 -47.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200696108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.900 kcal (2) G-P(sol) polarization free energy of solvation -39.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds