Wall clock time and date at job start Sat Apr 11 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47262 * 60.00054 * 11 10 9 13 13 C 1.54807 * 109.46777 * 179.97438 * 11 10 9 14 14 N 1.45121 * 109.54283 * 187.88901 * 13 11 10 15 15 C 1.34774 * 118.75546 * 90.71188 * 14 13 11 16 16 O 1.21282 * 120.00053 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00247 * 180.02562 * 15 14 13 18 18 N 1.46494 * 109.47329 * 180.02562 * 17 15 14 19 19 C 1.46101 * 118.72559 * 269.73030 * 18 17 15 20 20 C 1.53180 * 109.82778 * 161.46260 * 19 18 17 21 21 O 1.43244 * 108.53863 * 49.51227 * 20 19 18 22 22 C 1.42969 * 112.98979 * 291.48777 * 21 20 19 23 23 C 1.33864 * 118.73465 * 89.99690 * 18 17 15 24 24 O 1.21281 * 118.83247 * 1.88092 * 23 18 17 25 25 C 1.47506 * 122.48902 * 270.71587 * 14 13 11 26 26 C 1.53572 * 111.02545 * 41.62206 * 25 14 13 27 27 C 1.51534 * 109.58380 * 39.97857 * 26 25 14 28 28 O 1.38014 * 109.47405 * 300.00216 * 11 10 9 29 29 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 30 30 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 32 32 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 33 33 H 1.08999 * 109.46089 * 307.91897 * 13 11 10 34 34 H 1.09000 * 109.45960 * 67.87053 * 13 11 10 35 35 H 1.09003 * 109.46456 * 299.99972 * 17 15 14 36 36 H 1.08998 * 109.47256 * 59.99271 * 17 15 14 37 37 H 1.08998 * 109.39452 * 281.78029 * 19 18 17 38 38 H 1.09002 * 109.39634 * 41.50150 * 19 18 17 39 39 H 1.08995 * 109.79480 * 289.72905 * 20 19 18 40 40 H 1.08998 * 109.68379 * 169.23406 * 20 19 18 41 41 H 1.08997 * 109.41041 * 289.49517 * 22 21 20 42 42 H 1.08998 * 109.35561 * 169.66467 * 22 21 20 43 43 H 1.08996 * 109.16852 * 281.22844 * 25 14 13 44 44 H 1.08997 * 109.12563 * 161.99146 * 25 14 13 45 45 H 1.09007 * 109.45232 * 279.94697 * 26 25 14 46 46 H 1.09000 * 109.43650 * 160.00724 * 26 25 14 47 47 H 1.09001 * 109.59262 * 148.81548 * 27 26 25 48 48 H 1.09001 * 109.58815 * 28.38608 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0636 -4.8197 -0.0109 12 1 0.4339 -4.7597 -0.8985 13 6 1.8376 -6.1603 -0.0175 14 7 0.9064 -7.2575 -0.2047 15 6 0.6375 -7.6730 -1.4582 16 8 1.1706 -7.1321 -2.4039 17 6 -0.3257 -8.8097 -1.6851 18 7 -0.4459 -9.0686 -3.1219 19 6 -1.4766 -8.3621 -3.8789 20 6 -1.1472 -8.4090 -5.3741 21 8 -0.8552 -9.7644 -5.7338 22 6 0.3653 -10.2430 -5.1635 23 6 0.3893 -9.9473 -3.6896 24 8 1.1942 -10.5252 -2.9902 25 6 0.2431 -7.9352 0.9252 26 6 -0.2170 -6.9211 1.9827 27 6 -0.7760 -5.6907 1.2972 28 8 0.2740 -4.7493 1.1189 29 1 -0.4850 0.8400 0.0040 30 1 0.3555 -2.3880 -0.0021 31 1 2.6812 -3.7126 -0.9040 32 1 2.6880 -3.7165 0.8760 33 1 2.5630 -6.1568 -0.8310 34 1 2.3581 -6.2839 0.9322 35 1 0.0443 -9.7046 -1.1847 36 1 -1.3024 -8.5446 -1.2802 37 1 -2.4430 -8.8345 -3.7026 38 1 -1.5180 -7.3232 -3.5515 39 1 -0.2806 -7.7811 -5.5810 40 1 -2.0019 -8.0539 -5.9497 41 1 1.2087 -9.7491 -5.6459 42 1 0.4388 -11.3194 -5.3184 43 1 0.9414 -8.6364 1.3819 44 1 -0.6230 -8.4832 0.5542 45 1 0.6311 -6.6359 2.6053 46 1 -0.9894 -7.3720 2.6058 47 1 -1.5590 -5.2518 1.9155 48 1 -1.1867 -5.9681 0.3263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200696109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:16 Heat of formation + Delta-G solvation = -117.172891 kcal Electronic energy + Delta-G solvation = -31373.199113 eV Core-core repulsion = 27043.896851 eV Total energy + Delta-G solvation = -4329.302262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.29414 -40.31976 -38.51600 -37.96035 -35.77617 -35.62122 -34.59142 -32.89036 -31.00370 -30.83542 -29.97602 -28.56097 -26.97819 -26.21440 -24.86106 -24.20451 -22.68827 -21.77568 -20.96275 -19.86191 -19.05813 -18.08394 -17.80562 -17.43019 -17.14945 -16.50993 -16.33099 -16.22478 -15.99330 -15.62550 -15.16175 -14.81748 -14.64540 -14.37910 -14.17525 -13.95659 -13.79544 -13.59713 -13.40820 -13.07896 -13.04367 -12.68132 -12.52614 -12.23092 -12.14477 -11.97623 -11.72939 -11.67514 -11.40344 -11.02142 -10.92881 -10.82291 -10.78979 -10.30859 -10.20284 -9.97153 -9.80631 -9.68358 -9.43175 -9.09048 -8.83659 -8.60662 -6.84728 -5.69952 -2.97899 2.05897 2.34920 2.43062 2.88281 3.32202 3.47203 3.52544 3.55010 3.91445 3.92778 4.19221 4.32186 4.51066 4.57787 4.61181 4.64322 4.69348 4.78320 4.89313 4.94708 4.95904 5.04863 5.18617 5.21762 5.25748 5.30102 5.32189 5.40403 5.46618 5.57360 5.63376 5.73539 5.81434 5.93370 5.97253 6.07179 6.32946 6.33385 6.45052 6.65477 6.77805 6.91119 7.11793 7.65201 7.75071 7.97624 8.00558 8.48485 9.60179 10.18333 10.54655 11.53074 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013765 B = 0.002754 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.696719 B =10164.856914 C =11268.420533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.166 3.834 11 C 0.091 3.909 12 H 0.049 0.951 13 C 0.081 3.919 14 N -0.607 5.607 15 C 0.493 3.507 16 O -0.525 6.525 17 C 0.091 3.909 18 N -0.587 5.587 19 C 0.081 3.919 20 C 0.043 3.957 21 O -0.371 6.371 22 C 0.052 3.948 23 C 0.495 3.505 24 O -0.541 6.541 25 C 0.104 3.896 26 C -0.167 4.167 27 C 0.074 3.926 28 O -0.367 6.367 29 H 0.253 0.747 30 H 0.387 0.613 31 H 0.034 0.966 32 H 0.027 0.973 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.131 0.869 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 -24.341 -4.179 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.038 3.962 11 C 0.031 3.969 12 H 0.067 0.933 13 C -0.042 4.042 14 N -0.341 5.341 15 C 0.279 3.721 16 O -0.400 6.400 17 C -0.036 4.036 18 N -0.320 5.320 19 C -0.041 4.041 20 C -0.033 4.033 21 O -0.289 6.289 22 C -0.027 4.027 23 C 0.283 3.717 24 O -0.418 6.418 25 C -0.018 4.018 26 C -0.206 4.206 27 C -0.002 4.002 28 O -0.285 6.285 29 H 0.063 0.937 30 H 0.221 0.779 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.136 0.864 41 H 0.111 0.889 42 H 0.149 0.851 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.108 0.892 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.443 -24.232 -4.339 25.211 hybrid contribution 0.180 0.927 0.187 0.963 sum -5.263 -23.304 -4.151 24.249 Atomic orbital electron populations 1.69689 1.05095 1.25343 1.58011 1.24734 0.95529 0.97624 1.03222 0.86109 0.78785 0.84158 0.77116 1.20567 1.21939 1.21917 1.19285 0.91037 0.84133 1.42262 0.91149 1.42214 1.06037 0.99469 1.89233 1.20614 0.92382 0.84714 0.98521 1.22247 0.92555 0.94002 0.88099 0.93271 1.22434 0.92460 0.85923 1.03416 1.47940 1.45240 1.35081 1.05878 1.21127 0.83215 0.84691 0.83084 1.90721 1.51223 1.57010 1.41038 1.21452 1.00115 0.98885 0.83141 1.47069 1.34520 1.42087 1.08324 1.22256 0.90836 0.98526 0.92521 1.23060 1.03124 0.83736 0.93428 1.88179 1.40179 1.28491 1.72101 1.22818 0.89012 1.02963 0.87897 1.21017 0.80148 0.78727 0.91809 1.90740 1.37436 1.50617 1.63025 1.22030 0.97185 0.94933 0.87661 1.22523 1.02855 0.96819 0.98354 1.22107 0.89954 0.88984 0.99201 1.86450 1.44731 1.54285 1.42992 0.93689 0.77898 0.94844 0.95554 0.88945 0.89787 0.86531 0.87351 0.90258 0.89213 0.91132 0.86369 0.88852 0.85126 0.91118 0.90211 0.89778 0.89549 0.89189 0.93762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -19.40 5.49 -59.90 -0.33 -19.73 16 10 C 0.17 3.56 5.95 -4.04 -0.02 3.53 16 11 C 0.09 1.62 2.73 -25.78 -0.07 1.55 16 12 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 13 C 0.08 1.18 4.86 -3.83 -0.02 1.16 16 14 N -0.61 -7.38 2.19 -172.48 -0.38 -7.76 16 15 C 0.49 6.55 7.69 -10.99 -0.08 6.46 16 16 O -0.52 -9.07 15.86 5.56 0.09 -8.98 16 17 C 0.09 0.87 4.13 -5.20 -0.02 0.85 16 18 N -0.59 -6.05 2.32 -175.69 -0.41 -6.45 16 19 C 0.08 0.62 6.63 -4.16 -0.03 0.59 16 20 C 0.04 0.31 6.91 37.25 0.26 0.57 16 21 O -0.37 -3.20 10.85 -35.23 -0.38 -3.58 16 22 C 0.05 0.46 6.98 35.83 0.25 0.71 16 23 C 0.49 5.82 7.58 -11.56 -0.09 5.73 16 24 O -0.54 -8.11 16.36 5.56 0.09 -8.01 16 25 C 0.10 0.87 6.00 -3.19 -0.02 0.85 16 26 C -0.17 -1.49 5.78 -27.18 -0.16 -1.65 16 27 C 0.07 0.92 6.37 36.42 0.23 1.16 16 28 O -0.37 -6.41 9.19 -26.53 -0.24 -6.66 16 29 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.39 10.98 7.53 -40.82 -0.31 10.68 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.47 7.27 -51.93 -0.38 1.09 16 34 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 35 H 0.12 1.10 7.13 -51.93 -0.37 0.73 16 36 H 0.11 0.69 7.30 -51.93 -0.38 0.31 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.71 8.13 -51.93 -0.42 0.29 16 39 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.46 5.87 -51.93 -0.30 0.15 16 45 H 0.08 0.86 8.02 -51.93 -0.42 0.45 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.04 0.53 7.40 -51.93 -0.38 0.15 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -38.28 385.72 -7.64 -45.92 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.58 Total: 5.80 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -0.02 Total: 13.95 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -0.39 Total: -62.16 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.45 Total: -27.23 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.28 -7.64 -45.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200696109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.253 kcal (2) G-P(sol) polarization free energy of solvation -38.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds