Wall clock time and date at job start Sat Apr 11 2020 06:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99989 * 2 1 4 4 H 1.48496 * 109.47181 * 240.00499 * 3 2 1 5 5 H 1.48500 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47128 * 120.00246 * 3 2 1 7 7 C 1.38952 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99913 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99767 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00259 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99916 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46935 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99748 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.49673 * 324.93311 * 14 13 12 16 16 C 1.53036 * 109.49942 * 84.99666 * 14 13 12 17 17 C 1.53038 * 109.53948 * 181.34547 * 16 14 13 18 18 C 1.53187 * 109.31446 * 298.63830 * 17 16 14 19 19 N 1.46925 * 108.78004 * 54.63289 * 18 17 16 20 20 C 1.34770 * 120.63539 * 126.36332 * 19 18 17 21 21 O 1.21277 * 120.00289 * 180.02562 * 20 19 18 22 22 C 1.50702 * 119.99844 * 0.02562 * 20 19 18 23 23 H 1.09009 * 109.51884 * 304.86327 * 22 20 19 24 24 C 1.53136 * 109.52970 * 64.99063 * 22 20 19 25 25 O 1.43076 * 109.15675 * 175.21306 * 24 22 20 26 26 C 1.43070 * 113.59290 * 302.05511 * 25 24 22 27 27 C 1.53146 * 109.15244 * 57.94855 * 26 25 24 28 28 O 1.43073 * 109.14937 * 304.68606 * 27 26 25 29 29 C 1.46926 * 118.73481 * 306.64716 * 19 18 17 30 30 H 0.96996 * 119.99863 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00209 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47646 * 59.99107 * 12 10 9 33 33 H 1.09002 * 109.46527 * 299.99268 * 12 10 9 34 34 H 1.00898 * 110.99768 * 303.94753 * 13 12 10 35 35 H 1.09009 * 109.46174 * 61.32683 * 16 14 13 36 36 H 1.08993 * 109.45093 * 301.36520 * 16 14 13 37 37 H 1.08999 * 109.49879 * 178.68213 * 17 16 14 38 38 H 1.09002 * 109.52223 * 58.60547 * 17 16 14 39 39 H 1.09000 * 109.58841 * 294.84537 * 18 17 16 40 40 H 1.09004 * 109.58486 * 174.42252 * 18 17 16 41 41 H 1.09004 * 109.52208 * 55.31695 * 24 22 20 42 42 H 1.08996 * 109.58269 * 295.15755 * 24 22 20 43 43 H 1.08996 * 109.52659 * 298.04416 * 26 25 24 44 44 H 1.09001 * 109.52507 * 177.84833 * 26 25 24 45 45 H 1.08996 * 109.52874 * 64.59013 * 27 26 25 46 46 H 1.09003 * 109.52413 * 184.78704 * 27 26 25 47 47 H 1.08998 * 109.58677 * 173.14001 * 29 19 18 48 48 H 1.09000 * 109.58762 * 293.56387 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9794 -0.0016 14 6 1.4982 -7.2708 -0.0016 15 1 0.5857 -7.1898 0.5891 16 6 1.1436 -7.6597 -1.4386 17 6 0.3845 -8.9885 -1.4368 18 6 1.2796 -10.0826 -0.8467 19 7 1.7431 -9.6507 0.4789 20 6 1.5631 -10.4364 1.5590 21 8 1.9499 -10.0683 2.6479 22 6 0.8812 -11.7724 1.4136 23 1 -0.0928 -11.6350 0.9438 24 6 1.7423 -12.6949 0.5461 25 8 1.1442 -13.9941 0.5051 26 6 0.9745 -14.5872 1.7960 27 6 0.1133 -13.6647 2.6635 28 8 0.7114 -12.3656 2.7045 29 6 2.4010 -8.3431 0.6057 30 1 -0.4850 0.8400 0.0004 31 1 0.3535 -2.3906 -0.0005 32 1 0.6174 -4.9205 -0.8912 33 1 0.6170 -4.9208 0.8887 34 1 2.8333 -5.9120 -0.7830 35 1 2.0580 -7.7647 -2.0226 36 1 0.5177 -6.8844 -1.8805 37 1 0.1118 -9.2531 -2.4584 38 1 -0.5178 -8.8917 -0.8330 39 1 2.1378 -10.2440 -1.4991 40 1 0.7113 -11.0079 -0.7516 41 1 2.7425 -12.7678 0.9732 42 1 1.8063 -12.2913 -0.4644 43 1 1.9488 -14.7236 2.2652 44 1 0.4812 -15.5535 1.6909 45 1 -0.8869 -13.5919 2.2364 46 1 0.0504 -14.0688 3.6739 47 1 2.5724 -8.1209 1.6589 48 1 3.3525 -8.3596 0.0741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207395981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:35 Heat of formation + Delta-G solvation = -145.091164 kcal Electronic energy + Delta-G solvation = -30135.023257 eV Core-core repulsion = 25804.510368 eV Total energy + Delta-G solvation = -4330.512889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17296 -39.76205 -38.45458 -37.69473 -36.45136 -35.29494 -33.88584 -32.62863 -32.22373 -31.23808 -30.16927 -28.56036 -26.32278 -26.21273 -24.91465 -24.02708 -22.60838 -22.30293 -20.95951 -19.76683 -19.15577 -17.96943 -17.89431 -17.26428 -17.19072 -16.62119 -16.23331 -15.92942 -15.75771 -15.41835 -14.98910 -14.88247 -14.78758 -14.49684 -14.06143 -14.02057 -13.90826 -13.79865 -13.50385 -13.25056 -13.18190 -12.84929 -12.50796 -12.19589 -12.12462 -11.88943 -11.53490 -11.45361 -11.38036 -11.28709 -11.22008 -11.04148 -10.96797 -10.82519 -10.43914 -10.21232 -10.00418 -9.69821 -9.49905 -9.01949 -8.45621 -8.07141 -7.95908 -6.41467 -3.82330 2.20756 2.30438 3.11517 3.20617 3.26270 3.30408 3.32382 3.90382 3.93105 4.04877 4.06530 4.24994 4.34478 4.40532 4.47895 4.53729 4.55080 4.59403 4.67813 4.86271 4.87305 4.99369 5.04508 5.12805 5.15977 5.20952 5.24012 5.25848 5.30001 5.43509 5.56170 5.63920 5.70625 5.79279 5.94379 6.01172 6.05578 6.12088 6.27541 6.34210 6.43960 7.02579 7.16535 7.55329 7.61411 7.85346 8.06086 8.61208 9.17893 9.54146 10.05547 10.76166 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030996 B = 0.001827 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.120724 B =15320.942311 C =15560.969084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.053 3.947 13 N -0.660 5.660 14 C 0.076 3.924 15 H 0.081 0.919 16 C -0.154 4.154 17 C -0.131 4.131 18 C 0.095 3.905 19 N -0.607 5.607 20 C 0.523 3.477 21 O -0.509 6.509 22 C 0.039 3.961 23 H 0.094 0.906 24 C 0.030 3.970 25 O -0.373 6.373 26 C 0.020 3.980 27 C 0.023 3.977 28 O -0.349 6.349 29 C 0.125 3.875 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.352 0.648 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.064 0.936 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.952 -29.497 -3.052 29.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.292 5.292 14 C -0.036 4.036 15 H 0.099 0.901 16 C -0.193 4.193 17 C -0.170 4.170 18 C -0.028 4.028 19 N -0.343 5.343 20 C 0.309 3.691 21 O -0.382 6.382 22 C -0.023 4.023 23 H 0.112 0.888 24 C -0.047 4.047 25 O -0.291 6.291 26 C -0.057 4.057 27 C -0.054 4.054 28 O -0.267 6.267 29 C 0.003 3.997 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.172 0.828 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.082 0.918 46 H 0.130 0.870 47 H 0.121 0.879 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.951 -29.096 -1.740 29.297 hybrid contribution -0.768 0.830 -0.998 1.508 sum -3.719 -28.267 -2.738 28.642 Atomic orbital electron populations 1.69604 1.05934 1.28267 1.50527 1.25268 0.95644 0.99738 0.97298 0.85908 0.78751 0.80420 0.79081 1.19925 1.20987 1.19866 1.19659 0.93359 0.82233 1.47693 0.87949 1.41851 1.09191 1.04596 1.64335 1.19787 0.88386 0.84695 0.84562 1.90525 1.13733 1.87047 1.55398 1.21688 0.94289 0.90775 1.01202 1.59966 1.18591 0.99269 1.51374 1.21811 0.97115 0.89796 0.94858 0.90117 1.22350 1.01099 0.97380 0.98507 1.21873 0.98659 0.94869 1.01560 1.22050 0.98790 0.98016 0.83905 1.48017 1.59764 1.19144 1.07403 1.19849 0.79779 0.85195 0.84303 1.90764 1.48627 1.73288 1.25544 1.22550 1.00297 0.92444 0.86981 0.88809 1.23386 0.96239 0.83498 1.01617 1.88126 1.82346 1.30653 1.28009 1.23342 1.00643 0.97197 0.84520 1.23368 0.96305 0.83417 1.02337 1.88255 1.82366 1.31129 1.24970 1.21492 0.94670 0.79427 1.04142 0.91823 0.77468 0.93783 0.89577 0.82816 0.91191 0.91178 0.90307 0.91216 0.90470 0.89536 0.91222 0.86546 0.91688 0.87297 0.91758 0.87014 0.87933 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.44 10.38 7.82 -10.98 -0.09 10.29 16 11 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 12 C 0.05 0.92 5.97 -4.97 -0.03 0.89 16 13 N -0.66 -10.33 5.88 -108.10 -0.64 -10.96 16 14 C 0.08 0.90 2.60 -67.81 -0.18 0.73 16 15 H 0.08 1.02 7.80 -51.93 -0.41 0.62 16 16 C -0.15 -1.40 5.14 -26.69 -0.14 -1.54 16 17 C -0.13 -0.87 6.08 -26.62 -0.16 -1.03 16 18 C 0.10 0.59 5.07 -3.71 -0.02 0.58 16 19 N -0.61 -5.98 2.98 -173.03 -0.52 -6.50 16 20 C 0.52 6.30 7.12 -10.99 -0.08 6.22 16 21 O -0.51 -8.56 15.92 -14.26 -0.23 -8.78 16 22 C 0.04 0.36 2.42 -27.81 -0.07 0.29 16 23 H 0.09 0.69 7.44 -51.92 -0.39 0.31 16 24 C 0.03 0.22 5.90 37.23 0.22 0.44 16 25 O -0.37 -2.87 10.85 -48.80 -0.53 -3.40 16 26 C 0.02 0.11 7.05 37.23 0.26 0.38 16 27 C 0.02 0.15 7.05 37.23 0.26 0.41 16 28 O -0.35 -3.82 10.03 -62.51 -0.63 -4.45 16 29 C 0.12 1.48 6.01 -3.93 -0.02 1.46 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 32 H 0.04 0.68 7.41 -51.93 -0.39 0.29 16 33 H 0.09 1.43 8.06 -51.93 -0.42 1.01 16 34 H 0.35 5.56 8.18 -39.29 -0.32 5.23 16 35 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.07 0.69 7.42 -51.93 -0.39 0.30 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.39 4.59 -51.93 -0.24 0.15 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.12 0.60 5.46 -51.93 -0.28 0.31 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.10 1.51 7.01 -51.93 -0.36 1.15 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -35.43 382.22 -8.57 -44.00 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -7.25 Total: 11.12 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -0.27 Total: 11.05 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.48 Total: -55.69 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -1.30 Total: -32.37 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.43 -8.57 -44.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207395981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.091 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds