Wall clock time and date at job start Sat Apr 11 2020 06:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99989 * 2 1 4 4 H 1.48496 * 109.47181 * 240.00499 * 3 2 1 5 5 H 1.48500 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47128 * 120.00246 * 3 2 1 7 7 C 1.38952 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99913 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99817 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99767 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00259 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99916 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46935 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99748 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.49673 * 324.93311 * 14 13 12 16 16 C 1.53036 * 109.49942 * 84.99666 * 14 13 12 17 17 C 1.53038 * 109.53948 * 181.34547 * 16 14 13 18 18 C 1.53187 * 109.31446 * 298.63830 * 17 16 14 19 19 N 1.46925 * 108.78004 * 54.63289 * 18 17 16 20 20 C 1.34770 * 120.63539 * 126.36332 * 19 18 17 21 21 O 1.21277 * 120.00289 * 180.02562 * 20 19 18 22 22 C 1.50702 * 119.99844 * 0.02562 * 20 19 18 23 23 H 1.09009 * 109.51884 * 304.86327 * 22 20 19 24 24 C 1.53136 * 109.52970 * 64.99063 * 22 20 19 25 25 O 1.43076 * 109.15675 * 175.21306 * 24 22 20 26 26 C 1.43070 * 113.59290 * 302.05511 * 25 24 22 27 27 C 1.53146 * 109.15244 * 57.94855 * 26 25 24 28 28 O 1.43073 * 109.14937 * 304.68606 * 27 26 25 29 29 C 1.46926 * 118.73481 * 306.64716 * 19 18 17 30 30 H 0.96996 * 119.99863 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00209 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47646 * 59.99107 * 12 10 9 33 33 H 1.09002 * 109.46527 * 299.99268 * 12 10 9 34 34 H 1.00898 * 110.99768 * 303.94753 * 13 12 10 35 35 H 1.09009 * 109.46174 * 61.32683 * 16 14 13 36 36 H 1.08993 * 109.45093 * 301.36520 * 16 14 13 37 37 H 1.08999 * 109.49879 * 178.68213 * 17 16 14 38 38 H 1.09002 * 109.52223 * 58.60547 * 17 16 14 39 39 H 1.09000 * 109.58841 * 294.84537 * 18 17 16 40 40 H 1.09004 * 109.58486 * 174.42252 * 18 17 16 41 41 H 1.09004 * 109.52208 * 55.31695 * 24 22 20 42 42 H 1.08996 * 109.58269 * 295.15755 * 24 22 20 43 43 H 1.08996 * 109.52659 * 298.04416 * 26 25 24 44 44 H 1.09001 * 109.52507 * 177.84833 * 26 25 24 45 45 H 1.08996 * 109.52874 * 64.59013 * 27 26 25 46 46 H 1.09003 * 109.52413 * 184.78704 * 27 26 25 47 47 H 1.08998 * 109.58677 * 173.14001 * 29 19 18 48 48 H 1.09000 * 109.58762 * 293.56387 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9794 -0.0016 14 6 1.4982 -7.2708 -0.0016 15 1 0.5857 -7.1898 0.5891 16 6 1.1436 -7.6597 -1.4386 17 6 0.3845 -8.9885 -1.4368 18 6 1.2796 -10.0826 -0.8467 19 7 1.7431 -9.6507 0.4789 20 6 1.5631 -10.4364 1.5590 21 8 1.9499 -10.0683 2.6479 22 6 0.8812 -11.7724 1.4136 23 1 -0.0928 -11.6350 0.9438 24 6 1.7423 -12.6949 0.5461 25 8 1.1442 -13.9941 0.5051 26 6 0.9745 -14.5872 1.7960 27 6 0.1133 -13.6647 2.6635 28 8 0.7114 -12.3656 2.7045 29 6 2.4010 -8.3431 0.6057 30 1 -0.4850 0.8400 0.0004 31 1 0.3535 -2.3906 -0.0005 32 1 0.6174 -4.9205 -0.8912 33 1 0.6170 -4.9208 0.8887 34 1 2.8333 -5.9120 -0.7830 35 1 2.0580 -7.7647 -2.0226 36 1 0.5177 -6.8844 -1.8805 37 1 0.1118 -9.2531 -2.4584 38 1 -0.5178 -8.8917 -0.8330 39 1 2.1378 -10.2440 -1.4991 40 1 0.7113 -11.0079 -0.7516 41 1 2.7425 -12.7678 0.9732 42 1 1.8063 -12.2913 -0.4644 43 1 1.9488 -14.7236 2.2652 44 1 0.4812 -15.5535 1.6909 45 1 -0.8869 -13.5919 2.2364 46 1 0.0504 -14.0688 3.6739 47 1 2.5724 -8.1209 1.6589 48 1 3.3525 -8.3596 0.0741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207395981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:35 Heat of formation + Delta-G solvation = -173.380401 kcal Electronic energy + Delta-G solvation = -30136.249970 eV Core-core repulsion = 25804.510368 eV Total energy + Delta-G solvation = -4331.739603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.92964 -40.55234 -40.08239 -38.82137 -37.10608 -36.47186 -35.82553 -33.51546 -33.22915 -32.88945 -31.13572 -29.26799 -27.82601 -26.98593 -25.86884 -25.42160 -23.40418 -22.93312 -21.80296 -21.20388 -20.37979 -19.89136 -18.71644 -18.05681 -17.81018 -17.74813 -17.15851 -16.86173 -16.79957 -16.44556 -16.39123 -16.02145 -15.78030 -15.54783 -15.48117 -15.20957 -14.93315 -14.57388 -14.54577 -14.29274 -13.97759 -13.93957 -13.58351 -13.45510 -13.30586 -13.13963 -12.87992 -12.68641 -12.44215 -12.35983 -12.13440 -12.07605 -11.96068 -11.91588 -11.70822 -11.53333 -11.50972 -10.86691 -10.40623 -10.31421 -10.02988 -9.84643 -9.28694 -8.47473 -5.96426 1.33274 1.39284 1.41329 1.50768 1.52868 2.03454 2.28540 2.59997 2.68812 2.94599 3.19526 3.28013 3.42349 3.49975 3.73883 3.78990 3.81462 3.91125 3.96013 4.08615 4.10606 4.20928 4.25345 4.28968 4.37907 4.42835 4.47074 4.54798 4.57748 4.59051 4.76040 4.77409 4.79119 4.84462 4.86210 5.04607 5.16722 5.29769 5.35074 5.40004 5.83121 5.83808 5.86808 6.06619 6.24633 6.39464 6.58651 6.97674 7.11229 7.54508 8.09711 8.69622 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030996 B = 0.001827 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.120724 B =15320.942311 C =15560.969084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.070 3.930 13 N -0.678 5.678 14 C 0.082 3.918 15 H 0.072 0.928 16 C -0.149 4.149 17 C -0.125 4.125 18 C 0.089 3.911 19 N -0.599 5.599 20 C 0.517 3.483 21 O -0.571 6.571 22 C 0.043 3.957 23 H 0.117 0.883 24 C 0.036 3.964 25 O -0.379 6.379 26 C 0.017 3.983 27 C 0.017 3.983 28 O -0.388 6.388 29 C 0.129 3.871 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.350 0.650 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.057 0.943 42 H 0.143 0.857 43 H 0.060 0.940 44 H 0.137 0.863 45 H 0.077 0.923 46 H 0.125 0.875 47 H 0.065 0.935 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.266 -31.166 -5.006 32.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.062 4.062 13 N -0.311 5.311 14 C -0.028 4.028 15 H 0.090 0.910 16 C -0.188 4.188 17 C -0.163 4.163 18 C -0.032 4.032 19 N -0.333 5.333 20 C 0.304 3.696 21 O -0.449 6.449 22 C -0.018 4.018 23 H 0.134 0.866 24 C -0.041 4.041 25 O -0.298 6.298 26 C -0.059 4.059 27 C -0.059 4.059 28 O -0.307 6.307 29 C 0.006 3.994 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.170 0.830 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.075 0.925 42 H 0.160 0.840 43 H 0.078 0.922 44 H 0.154 0.846 45 H 0.095 0.905 46 H 0.143 0.857 47 H 0.083 0.917 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.310 -30.805 -3.740 31.329 hybrid contribution -0.361 1.277 -0.366 1.376 sum -4.670 -29.528 -4.106 30.175 Atomic orbital electron populations 1.69666 1.06815 1.29390 1.50180 1.26056 0.96575 1.02446 0.96223 0.84980 0.77757 0.76595 0.78946 1.19506 1.19429 1.19925 1.19641 0.92736 0.84032 1.50087 0.90288 1.41921 1.09330 1.04712 1.64990 1.20851 0.88260 0.86140 0.82293 1.90491 1.15823 1.87949 1.56648 1.21495 0.93911 0.87909 1.02901 1.59896 1.19044 1.00306 1.51812 1.21770 0.96159 0.87895 0.97026 0.90992 1.22278 1.01838 0.98835 0.95815 1.21870 0.97999 0.93230 1.03244 1.22417 1.00013 0.98857 0.81930 1.48072 1.58693 1.17879 1.08615 1.20513 0.79051 0.86255 0.83739 1.90731 1.51390 1.74791 1.27972 1.22604 1.01227 0.90937 0.87010 0.86553 1.23401 0.95097 0.83300 1.02351 1.88118 1.82258 1.30487 1.28907 1.23504 1.00642 0.98021 0.83728 1.23621 0.96770 0.81875 1.03603 1.88208 1.83058 1.33151 1.26265 1.21267 0.95439 0.80774 1.01951 0.91267 0.76974 0.90975 0.88631 0.82988 0.90343 0.91455 0.87402 0.91561 0.88221 0.87082 0.92481 0.83996 0.92169 0.84557 0.90477 0.85732 0.91668 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.89 13.05 21.66 0.28 -49.60 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 43.26 29.55 68.60 2.03 45.28 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.34 -19.24 9.68 84.04 0.81 -18.43 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.66 5.29 -306.98 -1.62 -31.28 16 10 C 0.44 20.99 7.82 87.66 0.69 21.68 16 11 O -0.62 -34.84 15.78 -3.05 -0.05 -34.89 16 12 C 0.07 2.41 5.97 85.56 0.51 2.92 16 13 N -0.68 -21.22 5.88 -495.91 -2.91 -24.13 16 14 C 0.08 1.90 2.60 44.85 0.12 2.02 16 15 H 0.07 1.79 7.80 -2.39 -0.02 1.78 16 16 C -0.15 -2.33 5.14 30.62 0.16 -2.18 16 17 C -0.12 -1.21 6.08 30.67 0.19 -1.02 16 18 C 0.09 0.80 5.07 86.36 0.44 1.24 16 19 N -0.60 -11.16 2.98 -819.75 -2.44 -13.60 16 20 C 0.52 12.47 7.12 87.66 0.62 13.09 16 21 O -0.57 -20.35 15.92 15.93 0.25 -20.10 16 22 C 0.04 0.74 2.42 29.89 0.07 0.81 16 23 H 0.12 1.41 7.44 -2.38 -0.02 1.39 16 24 C 0.04 0.45 5.90 72.03 0.43 0.87 16 25 O -0.38 -4.84 10.85 -136.01 -1.48 -6.32 16 26 C 0.02 0.17 7.05 72.03 0.51 0.67 16 27 C 0.02 0.20 7.05 72.03 0.51 0.71 16 28 O -0.39 -8.36 10.03 -122.90 -1.23 -9.59 16 29 C 0.13 3.09 6.01 86.22 0.52 3.60 16 30 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 32 H 0.07 2.10 7.41 -2.39 -0.02 2.08 16 33 H 0.10 3.13 8.06 -2.39 -0.02 3.11 16 34 H 0.35 11.04 8.18 -89.70 -0.73 10.31 16 35 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.07 1.13 7.42 -2.39 -0.02 1.12 16 37 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.11 0.52 4.59 -2.38 -0.01 0.50 16 41 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.14 0.94 5.46 -2.39 -0.01 0.93 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 44 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.06 2.07 7.01 -2.39 -0.02 2.05 16 48 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -80.74 382.22 -1.60 -82.34 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: -0.46 Total: 36.13 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 6.03 Total: 25.75 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -6.70 Total: -118.62 kcal Atomic # 8 Polarization: -68.39 SS G_CDS: -2.50 Total: -70.89 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -80.74 -1.60 -82.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207395981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.040 kcal (2) G-P(sol) polarization free energy of solvation -80.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds