Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46761 * 2 1 4 4 C 1.52993 * 109.46982 * 119.99912 * 2 1 3 5 5 H 1.09003 * 109.46952 * 182.49970 * 4 2 1 6 6 C 1.53002 * 109.47057 * 302.49705 * 4 2 1 7 7 N 1.46507 * 109.47073 * 175.00285 * 6 4 2 8 8 C 1.34775 * 119.99962 * 179.72478 * 7 6 4 9 9 O 1.21283 * 120.00203 * 0.27766 * 8 7 6 10 10 C 1.50699 * 119.99892 * 180.27359 * 8 7 6 11 11 S 1.81006 * 109.46950 * 180.02562 * 10 8 7 12 12 C 1.76204 * 99.99811 * 179.97438 * 11 10 8 13 13 H 1.07991 * 119.99972 * 0.02562 * 12 11 10 14 14 C 1.38796 * 119.99551 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00586 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99626 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47329 * 59.99866 * 16 14 12 18 18 H 1.48507 * 109.47054 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47069 * 299.99700 * 16 14 12 20 20 N 1.46901 * 109.47413 * 62.50064 * 4 2 1 21 21 C 1.46896 * 111.00272 * 86.37561 * 20 4 2 22 22 C 1.50693 * 109.47292 * 175.84777 * 21 20 4 23 23 N 1.30834 * 125.96401 * 90.01857 * 22 21 20 24 24 C 1.33245 * 109.82723 * 180.02562 * 23 22 21 25 25 N 1.30709 * 108.94947 * 0.02562 * 24 23 22 26 26 N 1.34434 * 125.95850 * 269.71697 * 22 21 20 27 27 C 1.46494 * 126.82349 * 0.02562 * 26 22 21 28 28 H 1.08991 * 109.47260 * 306.05638 * 1 2 3 29 29 H 1.09007 * 109.46944 * 66.05916 * 1 2 3 30 30 H 1.08999 * 109.47003 * 186.05397 * 1 2 3 31 31 H 1.08998 * 109.47109 * 239.99578 * 2 1 3 32 32 H 1.09007 * 109.47017 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47346 * 299.99140 * 3 2 1 34 34 H 1.08998 * 109.47654 * 59.99912 * 3 2 1 35 35 H 1.09002 * 109.47370 * 55.00506 * 6 4 2 36 36 H 1.09000 * 109.47140 * 294.99668 * 6 4 2 37 37 H 0.96996 * 120.00055 * 0.02562 * 7 6 4 38 38 H 1.09004 * 109.47007 * 299.99855 * 10 8 7 39 39 H 1.09000 * 109.47286 * 60.00312 * 10 8 7 40 40 H 0.96997 * 120.00040 * 180.02562 * 15 14 12 41 41 H 1.00904 * 110.99988 * 210.33178 * 20 4 2 42 42 H 1.09006 * 109.46935 * 295.84439 * 21 20 4 43 43 H 1.08998 * 109.47288 * 55.84429 * 21 20 4 44 44 H 1.08007 * 125.52360 * 180.02562 * 24 23 22 45 45 H 1.08997 * 109.47433 * 90.00037 * 27 26 22 46 46 H 1.09007 * 109.47105 * 210.00334 * 27 26 22 47 47 H 1.08999 * 109.47128 * 329.99891 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1291 -0.6825 1.2719 6 6 1.4793 -0.0371 2.4976 7 7 1.8694 -0.7972 3.6878 8 6 1.4900 -0.3761 4.9106 9 8 0.8213 0.6292 5.0253 10 6 1.8965 -1.1545 6.1353 11 16 1.2380 -0.3420 7.6126 12 6 1.8457 -1.4312 8.8573 13 1 2.4346 -2.2930 8.5801 14 6 1.5684 -1.1809 10.1940 15 7 0.8510 -0.1303 10.5320 16 14 2.2132 -2.3352 11.5136 17 1 3.6965 -2.3736 11.4560 18 1 1.7825 -1.8498 12.8494 19 1 1.6735 -3.6996 11.2846 20 7 1.6003 -2.1226 1.2195 21 6 2.5475 -2.9557 0.4667 22 6 2.1189 -4.3983 0.5438 23 7 1.3171 -5.0073 -0.2916 24 6 1.1566 -6.2768 0.0801 25 7 1.8568 -6.4940 1.1622 26 7 2.4983 -5.2856 1.4797 27 6 3.3978 -5.0395 2.6095 28 1 -0.3633 0.6048 0.8307 29 1 -0.3633 0.4170 -0.9393 30 1 -0.3633 -1.0219 0.1084 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 0.3920 0.0032 2.4326 36 1 1.8770 0.9754 2.5667 37 1 2.4045 -1.6010 3.5961 38 1 1.4990 -2.1674 6.0705 39 1 2.9840 -1.1942 6.1962 40 1 0.6575 0.0447 11.4662 41 1 1.4677 -2.4799 2.1537 42 1 2.5634 -2.6366 -0.5755 43 1 3.5444 -2.8494 0.8944 44 1 0.5468 -7.0078 -0.4301 45 1 2.8174 -4.7090 3.4709 46 1 3.9274 -5.9589 2.8593 47 1 4.1181 -4.2674 2.3390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268203170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = 51.965322 kcal Electronic energy + Delta-G solvation = -27406.238376 eV Core-core repulsion = 23559.316119 eV Total energy + Delta-G solvation = -3846.922257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.42425 -39.79862 -38.26416 -34.98887 -34.18830 -34.10111 -32.47865 -31.55325 -29.98895 -28.21050 -27.43174 -27.31608 -25.63899 -25.33593 -23.62794 -22.32718 -20.88098 -20.55035 -19.46415 -17.97245 -17.42011 -16.77779 -16.61340 -16.49349 -15.89738 -15.54154 -15.15999 -14.87952 -14.85274 -14.64688 -14.26101 -13.87957 -13.81573 -13.65213 -13.53129 -13.36547 -13.19805 -13.08467 -12.61742 -12.53789 -12.26077 -12.10934 -11.91918 -11.65154 -11.25261 -11.10314 -11.09375 -11.08087 -10.82544 -10.68010 -10.30432 -10.05766 -9.94102 -9.87965 -9.51747 -9.11699 -9.01627 -8.98334 -8.30487 -6.55918 -6.26383 -3.97746 1.21169 1.92576 2.59997 2.91917 2.98734 3.19481 3.23288 3.25951 3.49181 3.60225 3.79507 4.08344 4.15413 4.29473 4.33263 4.56556 4.66495 4.70168 4.74930 4.94525 5.00449 5.01474 5.03787 5.08294 5.08907 5.15724 5.35012 5.44407 5.51862 5.54002 5.70063 5.77805 5.80392 5.85384 5.91656 5.93931 6.02235 6.10056 6.12104 6.26651 6.35176 6.43928 6.47802 6.75009 7.49370 7.54062 7.78696 8.29522 8.48383 9.18726 10.80946 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.002828 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.369238 B = 9898.457979 C =12298.018563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.155 4.155 4 C 0.084 3.916 5 H 0.056 0.944 6 C 0.113 3.887 7 N -0.744 5.744 8 C 0.533 3.467 9 O -0.510 6.510 10 C -0.154 4.154 11 S -0.057 6.057 12 C -0.538 4.538 13 H 0.072 0.928 14 C 0.075 3.925 15 N -0.867 5.867 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.274 1.274 20 N -0.673 5.673 21 C 0.139 3.861 22 C 0.277 3.723 23 N -0.524 5.524 24 C 0.197 3.803 25 N -0.317 5.317 26 N -0.377 5.377 27 C 0.088 3.912 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.389 0.611 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.270 0.730 41 H 0.345 0.655 42 H 0.112 0.888 43 H 0.055 0.945 44 H 0.218 0.782 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.840 -6.121 -24.054 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 C -0.213 4.213 4 C -0.026 4.026 5 H 0.074 0.926 6 C -0.011 4.011 7 N -0.400 5.400 8 C 0.319 3.681 9 O -0.384 6.384 10 C -0.305 4.305 11 S 0.170 5.830 12 C -0.686 4.686 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.744 3.256 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 N -0.308 5.308 21 C 0.008 3.992 22 C 0.000 4.000 23 N -0.252 5.252 24 C -0.105 4.105 25 N -0.145 5.145 26 N -0.168 5.168 27 C -0.054 4.054 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.222 0.778 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.166 0.834 42 H 0.130 0.870 43 H 0.073 0.927 44 H 0.234 0.766 45 H 0.104 0.896 46 H 0.115 0.885 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.143 -4.761 -24.067 25.067 hybrid contribution 2.289 -2.382 1.444 3.605 sum 7.432 -7.143 -22.624 24.861 Atomic orbital electron populations 1.21829 0.94193 1.03159 1.01130 1.21018 0.97230 0.95193 0.96358 1.21956 1.00831 0.95926 1.02540 1.21892 0.97812 0.87229 0.95671 0.92582 1.21680 1.01613 0.95610 0.82184 1.46062 1.57602 1.30021 1.06277 1.20296 0.79054 0.85185 0.83578 1.90720 1.36772 1.24973 1.85912 1.23538 1.04781 1.03338 0.98853 1.85441 1.69662 1.35692 0.92240 1.22811 1.39524 1.13321 0.92970 0.91019 1.24986 0.94814 0.95783 0.97914 1.69999 1.35846 1.25967 1.18371 0.86233 0.79173 0.80359 0.79786 1.19941 1.20757 1.19920 1.60389 1.47517 1.01536 1.21334 1.20461 0.93253 0.82972 1.02560 1.24112 0.94167 0.94601 0.87156 1.70478 1.19258 1.06421 1.29047 1.26013 0.98377 0.93658 0.92500 1.78098 1.14506 1.03427 1.18457 1.50315 1.36196 1.07642 1.22689 1.22063 0.92581 1.04212 0.86593 0.92667 0.93267 0.90935 0.90788 0.92794 0.92250 0.91979 0.89935 0.90350 0.77806 0.89351 0.89311 0.92056 0.83427 0.86982 0.92707 0.76574 0.89595 0.88473 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.53 37.16 0.32 -0.91 16 2 C -0.08 -0.55 2.84 -90.62 -0.26 -0.81 16 3 C -0.15 -1.03 8.90 37.16 0.33 -0.70 16 4 C 0.08 0.59 2.00 -67.71 -0.14 0.46 16 5 H 0.06 0.33 7.71 -51.93 -0.40 -0.07 16 6 C 0.11 1.16 4.60 -4.04 -0.02 1.14 16 7 N -0.74 -8.58 4.98 -60.29 -0.30 -8.88 16 8 C 0.53 9.22 7.85 -10.99 -0.09 9.14 16 9 O -0.51 -11.06 15.86 5.55 0.09 -10.97 16 10 C -0.15 -2.92 6.16 36.01 0.22 -2.69 16 11 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 12 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 13 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 14 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -25.78 13.22 55.49 0.73 -25.05 16 16 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 N -0.67 -5.03 5.56 -108.00 -0.60 -5.63 16 21 C 0.14 0.89 5.85 -4.98 -0.03 0.87 16 22 C 0.28 2.58 7.45 -155.69 -1.16 1.42 16 23 N -0.52 -5.90 11.19 -11.97 -0.13 -6.03 16 24 C 0.20 2.03 13.03 -91.81 -1.20 0.84 16 25 N -0.32 -3.59 12.70 29.29 0.37 -3.22 16 26 N -0.38 -3.49 4.04 -65.10 -0.26 -3.75 16 27 C 0.09 0.49 11.33 59.84 0.68 1.17 16 28 H 0.05 0.51 6.62 -51.93 -0.34 0.16 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.71 7.51 -51.93 -0.39 0.32 16 31 H 0.07 0.49 7.57 -51.93 -0.39 0.09 16 32 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.47 6.61 -51.93 -0.34 0.13 16 35 H 0.08 0.99 6.25 -51.93 -0.32 0.67 16 36 H 0.08 0.86 6.75 -51.93 -0.35 0.51 16 37 H 0.39 3.25 7.40 -40.82 -0.30 2.95 16 38 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 39 H 0.09 1.52 8.14 -51.92 -0.42 1.09 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.35 2.81 6.65 -39.29 -0.26 2.55 16 42 H 0.11 0.70 7.58 -51.93 -0.39 0.31 16 43 H 0.06 0.23 6.93 -51.93 -0.36 -0.13 16 44 H 0.22 1.43 8.06 -52.48 -0.42 1.01 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 47 H 0.09 0.26 7.10 -51.93 -0.37 -0.10 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -36.65 398.38 -9.63 -46.28 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.16 Total: 1.73 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.14 Total: -2.75 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.19 Total: -52.56 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.65 -9.63 -46.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268203170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.249 kcal (2) G-P(sol) polarization free energy of solvation -36.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds