Wall clock time and date at job start Sat Apr 11 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47072 * 2 1 4 4 C 1.53002 * 109.46968 * 119.99970 * 2 1 3 5 5 H 1.09003 * 109.46997 * 296.84822 * 4 2 1 6 6 C 1.52997 * 109.47145 * 176.85129 * 4 2 1 7 7 N 1.46500 * 109.47202 * 184.99769 * 6 4 2 8 8 C 1.34773 * 119.99922 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00308 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99955 * 180.02562 * 8 7 6 11 11 S 1.80992 * 109.47451 * 180.02562 * 10 8 7 12 12 C 1.76204 * 100.00485 * 179.97438 * 11 10 8 13 13 H 1.08000 * 119.99276 * 359.97438 * 12 11 10 14 14 C 1.38794 * 120.00453 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00444 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99774 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46948 * 89.99796 * 16 14 12 18 18 H 1.48501 * 109.47138 * 209.99705 * 16 14 12 19 19 H 1.48502 * 109.47137 * 329.99963 * 16 14 12 20 20 N 1.46898 * 109.47108 * 56.84837 * 4 2 1 21 21 C 1.46899 * 110.99638 * 62.27568 * 20 4 2 22 22 C 1.50706 * 109.46780 * 178.49234 * 21 20 4 23 23 C 1.39678 * 127.04786 * 95.00317 * 22 21 20 24 24 N 1.31374 * 105.90172 * 179.97438 * 23 22 21 25 25 N 1.28609 * 108.71840 * 359.97438 * 24 23 22 26 26 C 1.46494 * 124.61808 * 180.02562 * 25 24 23 27 27 N 1.28595 * 110.75648 * 359.75274 * 25 24 23 28 28 H 1.08993 * 109.47336 * 304.31575 * 1 2 3 29 29 H 1.09004 * 109.46674 * 64.31657 * 1 2 3 30 30 H 1.09006 * 109.46851 * 184.31104 * 1 2 3 31 31 H 1.08997 * 109.47335 * 239.99719 * 2 1 3 32 32 H 1.09001 * 109.46983 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47348 * 300.00044 * 3 2 1 34 34 H 1.09000 * 109.46987 * 60.00113 * 3 2 1 35 35 H 1.08998 * 109.47176 * 305.00053 * 6 4 2 36 36 H 1.08998 * 109.47306 * 64.99613 * 6 4 2 37 37 H 0.97002 * 119.99625 * 0.02562 * 7 6 4 38 38 H 1.08998 * 109.47009 * 300.00227 * 10 8 7 39 39 H 1.09006 * 109.47191 * 59.99466 * 10 8 7 40 40 H 0.96992 * 120.00248 * 179.97438 * 15 14 12 41 41 H 1.00897 * 111.00122 * 186.22821 * 20 4 2 42 42 H 1.08995 * 109.47329 * 298.49249 * 21 20 4 43 43 H 1.09000 * 109.47328 * 58.49784 * 21 20 4 44 44 H 1.08002 * 127.04844 * 359.97438 * 23 22 21 45 45 H 1.09002 * 109.47567 * 89.97987 * 26 25 24 46 46 H 1.09007 * 109.46927 * 209.97921 * 26 25 24 47 47 H 1.09002 * 109.47422 * 329.97775 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7235 -0.1758 2.1384 6 6 3.5679 -0.7903 1.2103 7 7 4.0500 -1.5835 2.3437 8 6 5.3722 -1.7812 2.5140 9 8 6.1631 -1.3020 1.7292 10 6 5.8681 -2.5976 3.6796 11 16 7.6756 -2.6791 3.6337 12 6 7.9742 -3.6618 5.0655 13 1 7.1451 -4.0117 5.6626 14 6 9.2747 -3.9860 5.4259 15 7 9.4978 -4.7197 6.4957 16 14 10.7086 -3.3812 4.3925 17 1 11.1615 -2.0607 4.8991 18 1 11.8266 -4.3547 4.4794 19 1 10.2775 -3.2474 2.9778 20 7 1.4891 -2.0825 1.2879 21 6 1.9399 -2.8658 0.1299 22 6 1.3860 -4.2643 0.2231 23 6 0.2204 -4.7494 -0.3745 24 7 0.1344 -6.0123 -0.0230 25 7 1.1419 -6.3029 0.7218 26 6 1.3908 -7.6225 1.3073 27 7 1.9039 -5.2789 0.8777 28 1 -0.3633 0.5793 0.8487 29 1 -0.3633 0.4454 -0.9262 30 1 -0.3633 -1.0248 0.0773 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.8869 -1.2569 0.2784 36 1 3.9788 0.2175 1.2712 37 1 3.4174 -1.9670 2.9712 38 1 5.5494 -2.1311 4.6117 39 1 5.4568 -3.6052 3.6185 40 1 10.4066 -4.9465 6.7474 41 1 1.7280 -2.5449 2.1523 42 1 1.5857 -2.3952 -0.7872 43 1 3.0291 -2.9064 0.1203 44 1 -0.4688 -4.1990 -0.9978 45 1 1.9908 -8.2181 0.6192 46 1 1.9264 -7.5067 2.2496 47 1 0.4405 -8.1246 1.4888 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271808481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:01 Heat of formation + Delta-G solvation = 68.857805 kcal Electronic energy + Delta-G solvation = -27411.911550 eV Core-core repulsion = 23565.721806 eV Total energy + Delta-G solvation = -3846.189744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.73308 -39.87208 -38.33375 -34.86621 -34.26057 -33.24222 -32.44727 -32.39318 -30.19164 -28.84193 -27.73784 -26.77536 -25.66106 -25.42587 -22.87607 -22.60589 -21.38330 -20.43466 -19.52609 -17.91363 -17.61536 -17.04750 -16.58776 -16.47548 -16.15527 -15.57875 -15.10462 -14.97430 -14.92523 -14.56173 -14.07429 -14.00951 -13.59894 -13.57098 -13.32292 -13.13132 -13.04378 -12.80985 -12.80260 -12.49111 -12.32441 -12.16599 -11.71879 -11.56582 -11.28133 -11.18043 -11.10842 -11.01272 -10.97290 -10.78004 -10.60621 -10.45419 -9.86531 -9.54342 -9.44798 -9.03736 -8.98161 -8.74801 -8.50510 -6.91999 -6.29575 -4.01074 1.61117 2.11686 2.18319 2.75121 2.96741 3.27969 3.33008 3.49964 3.62621 3.78713 4.01699 4.32545 4.37952 4.48402 4.61104 4.73840 4.74504 4.76440 4.78951 4.92628 5.01992 5.03269 5.07921 5.09659 5.24105 5.25125 5.36234 5.41034 5.45053 5.60154 5.65146 5.70470 5.76990 5.78144 5.87411 5.89191 5.96285 6.01356 6.08159 6.16463 6.44828 6.47474 6.61420 6.96407 7.54130 7.93604 8.13420 8.41028 8.46929 9.16721 10.79738 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009443 B = 0.002998 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.521194 B = 9337.722312 C =11814.259958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C -0.153 4.153 4 C 0.082 3.918 5 H 0.094 0.906 6 C 0.083 3.917 7 N -0.737 5.737 8 C 0.533 3.467 9 O -0.518 6.518 10 C -0.124 4.124 11 S -0.141 6.141 12 C -0.521 4.521 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.881 5.881 16 Si 0.856 3.144 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 N -0.670 5.670 21 C 0.140 3.860 22 C 0.003 3.997 23 C -0.011 4.011 24 N -0.295 5.295 25 N -0.158 5.158 26 C 0.107 3.893 27 N -0.277 5.277 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.395 0.605 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.344 0.656 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.195 0.805 45 H 0.089 0.911 46 H 0.105 0.895 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.260 3.585 -13.672 27.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 C -0.211 4.211 4 C -0.029 4.029 5 H 0.112 0.888 6 C -0.043 4.043 7 N -0.392 5.392 8 C 0.319 3.681 9 O -0.393 6.393 10 C -0.274 4.274 11 S 0.085 5.915 12 C -0.668 4.668 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.518 5.518 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 N -0.301 5.301 21 C 0.010 3.990 22 C -0.160 4.160 23 C -0.194 4.194 24 N -0.136 5.136 25 N -0.058 5.058 26 C -0.033 4.033 27 N -0.120 5.120 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.229 0.771 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.163 0.837 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.212 0.788 45 H 0.108 0.892 46 H 0.123 0.877 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.170 3.172 -14.595 26.732 hybrid contribution 0.309 -0.101 0.962 1.015 sum -21.861 3.070 -13.633 25.946 Atomic orbital electron populations 1.21722 0.94000 1.02951 1.00888 1.21093 0.96939 0.95739 0.96694 1.21926 1.01478 0.95608 1.02078 1.21964 0.90506 0.90079 1.00322 0.88832 1.22100 0.95291 0.96899 0.90009 1.45937 1.07487 1.55878 1.29910 1.20251 0.81574 0.80074 0.86241 1.90699 1.54567 1.48994 1.45000 1.23271 1.03084 1.02323 0.98758 1.84776 0.97862 1.70181 1.38678 1.22316 0.97041 1.36857 1.10608 0.89420 1.24707 0.98329 0.93679 0.94573 1.69935 1.21795 1.35962 1.24069 0.86740 0.82433 0.79438 0.83276 1.19191 1.19939 1.15931 1.60733 1.61925 1.02321 1.05168 1.20214 0.98242 0.85063 0.95527 1.22994 0.96056 0.96150 1.00780 1.24581 0.99585 0.90616 1.04589 1.74048 1.11738 1.17577 1.10212 1.47917 1.13266 1.10592 1.34068 1.22154 1.04452 0.76718 0.99973 1.74088 1.20933 0.95190 1.21775 0.93020 0.93378 0.91011 0.90934 0.92211 0.92364 0.92452 0.91295 0.90771 0.77071 0.88587 0.88495 0.91945 0.83737 0.88492 0.92433 0.78767 0.89238 0.87667 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.07 37.16 0.34 -0.51 16 2 C -0.09 -0.56 2.09 -90.62 -0.19 -0.74 16 3 C -0.15 -1.00 8.91 37.16 0.33 -0.67 16 4 C 0.08 0.61 2.30 -67.71 -0.16 0.45 16 5 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 6 C 0.08 0.86 4.16 -4.04 -0.02 0.85 16 7 N -0.74 -9.09 5.36 -60.30 -0.32 -9.41 16 8 C 0.53 9.42 7.85 -10.99 -0.09 9.33 16 9 O -0.52 -11.16 15.86 5.56 0.09 -11.08 16 10 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 11 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 12 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 13 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 14 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 15 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 16 Si 0.86 21.88 27.74 -169.99 -4.71 17.17 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 20 N -0.67 -5.21 5.39 -107.99 -0.58 -5.79 16 21 C 0.14 1.22 5.49 -4.97 -0.03 1.19 16 22 C 0.00 0.03 6.85 -82.25 -0.56 -0.53 16 23 C -0.01 -0.10 12.16 -17.21 -0.21 -0.31 16 24 N -0.29 -3.28 12.05 30.67 0.37 -2.91 16 25 N -0.16 -1.72 4.35 -16.64 -0.07 -1.79 16 26 C 0.11 0.71 11.57 59.84 0.69 1.40 16 27 N -0.28 -3.40 12.05 33.72 0.41 -2.99 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.48 7.38 -51.93 -0.38 0.10 16 31 H 0.07 0.48 6.65 -51.93 -0.35 0.13 16 32 H 0.06 0.44 6.62 -51.93 -0.34 0.10 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.80 6.62 -51.93 -0.34 0.46 16 36 H 0.07 0.84 6.77 -51.93 -0.35 0.49 16 37 H 0.39 3.95 7.18 -40.82 -0.29 3.66 16 38 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 39 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 41 H 0.34 2.92 7.32 -39.29 -0.29 2.63 16 42 H 0.10 0.68 6.51 -51.93 -0.34 0.34 16 43 H 0.06 0.62 6.29 -51.93 -0.33 0.29 16 44 H 0.20 1.24 8.06 -52.49 -0.42 0.81 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 47 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -36.27 395.56 -6.78 -43.04 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.24 Total: 3.05 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 0.55 Total: -3.77 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.57 Total: -48.78 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.27 -6.78 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271808481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.902 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds