Wall clock time and date at job start Sat Apr 11 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47072 * 2 1 4 4 C 1.53002 * 109.46968 * 119.99970 * 2 1 3 5 5 H 1.09003 * 109.46997 * 296.84822 * 4 2 1 6 6 C 1.52997 * 109.47145 * 176.85129 * 4 2 1 7 7 N 1.46500 * 109.47202 * 184.99769 * 6 4 2 8 8 C 1.34773 * 119.99922 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00308 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99955 * 180.02562 * 8 7 6 11 11 S 1.80992 * 109.47451 * 180.02562 * 10 8 7 12 12 C 1.76204 * 100.00485 * 179.97438 * 11 10 8 13 13 H 1.08000 * 119.99276 * 359.97438 * 12 11 10 14 14 C 1.38794 * 120.00453 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00444 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99774 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46948 * 89.99796 * 16 14 12 18 18 H 1.48501 * 109.47138 * 209.99705 * 16 14 12 19 19 H 1.48502 * 109.47137 * 329.99963 * 16 14 12 20 20 N 1.46898 * 109.47108 * 56.84837 * 4 2 1 21 21 C 1.46899 * 110.99638 * 62.27568 * 20 4 2 22 22 C 1.50706 * 109.46780 * 178.49234 * 21 20 4 23 23 C 1.39678 * 127.04786 * 95.00317 * 22 21 20 24 24 N 1.31374 * 105.90172 * 179.97438 * 23 22 21 25 25 N 1.28609 * 108.71840 * 359.97438 * 24 23 22 26 26 C 1.46494 * 124.61808 * 180.02562 * 25 24 23 27 27 N 1.28595 * 110.75648 * 359.75274 * 25 24 23 28 28 H 1.08993 * 109.47336 * 304.31575 * 1 2 3 29 29 H 1.09004 * 109.46674 * 64.31657 * 1 2 3 30 30 H 1.09006 * 109.46851 * 184.31104 * 1 2 3 31 31 H 1.08997 * 109.47335 * 239.99719 * 2 1 3 32 32 H 1.09001 * 109.46983 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47348 * 300.00044 * 3 2 1 34 34 H 1.09000 * 109.46987 * 60.00113 * 3 2 1 35 35 H 1.08998 * 109.47176 * 305.00053 * 6 4 2 36 36 H 1.08998 * 109.47306 * 64.99613 * 6 4 2 37 37 H 0.97002 * 119.99625 * 0.02562 * 7 6 4 38 38 H 1.08998 * 109.47009 * 300.00227 * 10 8 7 39 39 H 1.09006 * 109.47191 * 59.99466 * 10 8 7 40 40 H 0.96992 * 120.00248 * 179.97438 * 15 14 12 41 41 H 1.00897 * 111.00122 * 186.22821 * 20 4 2 42 42 H 1.08995 * 109.47329 * 298.49249 * 21 20 4 43 43 H 1.09000 * 109.47328 * 58.49784 * 21 20 4 44 44 H 1.08002 * 127.04844 * 359.97438 * 23 22 21 45 45 H 1.09002 * 109.47567 * 89.97987 * 26 25 24 46 46 H 1.09007 * 109.46927 * 209.97921 * 26 25 24 47 47 H 1.09002 * 109.47422 * 329.97775 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7235 -0.1758 2.1384 6 6 3.5679 -0.7903 1.2103 7 7 4.0500 -1.5835 2.3437 8 6 5.3722 -1.7812 2.5140 9 8 6.1631 -1.3020 1.7292 10 6 5.8681 -2.5976 3.6796 11 16 7.6756 -2.6791 3.6337 12 6 7.9742 -3.6618 5.0655 13 1 7.1451 -4.0117 5.6626 14 6 9.2747 -3.9860 5.4259 15 7 9.4978 -4.7197 6.4957 16 14 10.7086 -3.3812 4.3925 17 1 11.1615 -2.0607 4.8991 18 1 11.8266 -4.3547 4.4794 19 1 10.2775 -3.2474 2.9778 20 7 1.4891 -2.0825 1.2879 21 6 1.9399 -2.8658 0.1299 22 6 1.3860 -4.2643 0.2231 23 6 0.2204 -4.7494 -0.3745 24 7 0.1344 -6.0123 -0.0230 25 7 1.1419 -6.3029 0.7218 26 6 1.3908 -7.6225 1.3073 27 7 1.9039 -5.2789 0.8777 28 1 -0.3633 0.5793 0.8487 29 1 -0.3633 0.4454 -0.9262 30 1 -0.3633 -1.0248 0.0773 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.8869 -1.2569 0.2784 36 1 3.9788 0.2175 1.2712 37 1 3.4174 -1.9670 2.9712 38 1 5.5494 -2.1311 4.6117 39 1 5.4568 -3.6052 3.6185 40 1 10.4066 -4.9465 6.7474 41 1 1.7280 -2.5449 2.1523 42 1 1.5857 -2.3952 -0.7872 43 1 3.0291 -2.9064 0.1203 44 1 -0.4688 -4.1990 -0.9978 45 1 1.9908 -8.2181 0.6192 46 1 1.9264 -7.5067 2.2496 47 1 0.4405 -8.1246 1.4888 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271808481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:00 Heat of formation + Delta-G solvation = 41.007910 kcal Electronic energy + Delta-G solvation = -27413.119212 eV Core-core repulsion = 23565.721806 eV Total energy + Delta-G solvation = -3847.397406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.49186 -40.99109 -39.34486 -35.53310 -35.35268 -34.69066 -33.95923 -33.17615 -31.50071 -29.67884 -28.49421 -27.86559 -27.38960 -26.21111 -23.64268 -23.34095 -22.19763 -21.66596 -20.29985 -19.80465 -18.32310 -17.95598 -17.79508 -17.39447 -17.28714 -17.07601 -16.64696 -16.04371 -15.71454 -15.57346 -15.35254 -15.11188 -14.89193 -14.60936 -14.43347 -14.06694 -13.85626 -13.75640 -13.51053 -13.36876 -13.35090 -13.07311 -13.02584 -12.79421 -12.71150 -12.58141 -12.28668 -11.90443 -11.78396 -11.72145 -11.69976 -11.37632 -11.24172 -11.18943 -11.01925 -10.56412 -10.21694 -10.12435 -9.45707 -9.01721 -8.53438 -6.24340 0.82940 0.96462 1.29658 1.42768 1.45240 1.51345 1.53140 1.53916 2.18012 2.24042 2.69078 2.84804 3.09224 3.33295 3.69511 3.75911 3.81778 4.00123 4.15851 4.19837 4.22352 4.27198 4.29133 4.37322 4.42732 4.45722 4.53175 4.60236 4.65219 4.75719 4.87552 4.93277 4.99028 5.13600 5.16309 5.26739 5.28137 5.29781 5.42453 5.56429 5.68730 5.68902 5.76680 5.91594 6.09359 6.25542 6.36922 6.91701 7.13416 7.36726 8.59134 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009443 B = 0.002998 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.521194 B = 9337.722312 C =11814.259958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 C -0.152 4.152 4 C 0.094 3.906 5 H 0.104 0.896 6 C 0.084 3.916 7 N -0.711 5.711 8 C 0.537 3.463 9 O -0.560 6.560 10 C -0.111 4.111 11 S -0.173 6.173 12 C -0.529 4.529 13 H 0.061 0.939 14 C 0.046 3.954 15 N -0.917 5.917 16 Si 0.914 3.086 17 H -0.261 1.261 18 H -0.258 1.258 19 H -0.238 1.238 20 N -0.661 5.661 21 C 0.147 3.853 22 C -0.003 4.003 23 C -0.011 4.011 24 N -0.312 5.312 25 N -0.165 5.165 26 C 0.097 3.903 27 N -0.310 5.310 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.409 0.591 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.277 0.723 41 H 0.340 0.660 42 H 0.117 0.883 43 H 0.036 0.964 44 H 0.225 0.775 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.923 4.539 -14.862 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 C -0.210 4.210 4 C -0.016 4.016 5 H 0.122 0.878 6 C -0.042 4.042 7 N -0.366 5.366 8 C 0.322 3.678 9 O -0.438 6.438 10 C -0.262 4.262 11 S 0.054 5.946 12 C -0.677 4.677 13 H 0.079 0.921 14 C -0.159 4.159 15 N -0.555 5.555 16 Si 0.736 3.264 17 H -0.186 1.186 18 H -0.183 1.183 19 H -0.162 1.162 20 N -0.292 5.292 21 C 0.017 3.983 22 C -0.166 4.166 23 C -0.193 4.193 24 N -0.153 5.153 25 N -0.066 5.066 26 C -0.042 4.042 27 N -0.153 5.153 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.246 0.754 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.159 0.841 42 H 0.135 0.865 43 H 0.054 0.946 44 H 0.241 0.759 45 H 0.117 0.883 46 H 0.126 0.874 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.889 4.112 -15.768 28.918 hybrid contribution 0.644 -0.406 1.333 1.535 sum -23.246 3.707 -14.435 27.613 Atomic orbital electron populations 1.21667 0.93185 1.02815 1.01324 1.21074 0.97411 0.95558 0.96004 1.21917 1.00722 0.95691 1.02681 1.21956 0.88016 0.90125 1.01524 0.87782 1.22277 0.97374 0.95962 0.88555 1.45701 1.05804 1.54720 1.30341 1.19894 0.82964 0.79684 0.85209 1.90688 1.55998 1.50905 1.46249 1.23254 0.98415 1.03829 1.00715 1.84684 1.03719 1.69370 1.36874 1.22454 0.96553 1.37135 1.11525 0.92054 1.25555 1.00865 0.93834 0.95658 1.70010 1.22860 1.37106 1.25523 0.85876 0.79652 0.79420 0.81482 1.18585 1.18256 1.16160 1.60766 1.61399 1.02234 1.04766 1.20212 0.96820 0.84688 0.96612 1.23281 0.96345 0.96430 1.00565 1.25101 0.99644 0.90263 1.04276 1.74028 1.12144 1.18405 1.10743 1.48298 1.12997 1.11239 1.34102 1.22461 1.05837 0.75661 1.00238 1.74046 1.22073 0.96194 1.23019 0.93047 0.92603 0.91311 0.90774 0.93347 0.91590 0.92104 0.92166 0.91187 0.75363 0.86941 0.87348 0.91327 0.84110 0.86510 0.94612 0.75861 0.88260 0.87356 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 9.07 71.98 0.65 -0.58 16 2 C -0.08 -0.86 2.09 -10.79 -0.02 -0.88 16 3 C -0.15 -1.67 8.91 71.98 0.64 -1.03 16 4 C 0.09 1.19 2.30 44.92 0.10 1.29 16 5 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 6 C 0.08 1.62 4.16 86.38 0.36 1.98 16 7 N -0.71 -16.48 5.36 -463.08 -2.48 -18.97 16 8 C 0.54 18.52 7.85 87.66 0.69 19.20 16 9 O -0.56 -23.97 15.86 -3.03 -0.05 -24.02 16 10 C -0.11 -4.25 6.16 71.24 0.44 -3.82 16 11 S -0.17 -8.83 18.55 -56.49 -1.05 -9.88 16 12 C -0.53 -31.05 10.04 67.95 0.68 -30.36 16 13 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 14 C 0.05 2.73 5.50 84.86 0.47 3.20 16 15 N -0.92 -56.07 13.97 21.65 0.30 -55.77 16 16 Si 0.91 45.25 27.74 68.60 1.90 47.15 16 17 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 20 N -0.66 -8.88 5.39 -495.58 -2.67 -11.55 16 21 C 0.15 2.32 5.49 85.56 0.47 2.79 16 22 C 0.00 -0.07 6.85 42.98 0.29 0.23 16 23 C -0.01 -0.18 12.16 85.11 1.03 0.85 16 24 N -0.31 -6.58 12.05 -56.87 -0.69 -7.26 16 25 N -0.16 -3.48 4.35 -206.55 -0.90 -4.38 16 26 C 0.10 1.22 11.57 127.77 1.48 2.70 16 27 N -0.31 -7.42 12.05 -47.24 -0.57 -7.99 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.71 7.38 -2.38 -0.02 0.69 16 31 H 0.07 0.79 6.65 -2.39 -0.02 0.77 16 32 H 0.05 0.65 6.62 -2.39 -0.02 0.63 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 1.34 6.62 -2.39 -0.02 1.32 16 36 H 0.07 1.49 6.77 -2.39 -0.02 1.47 16 37 H 0.41 7.34 7.18 -92.71 -0.67 6.67 16 38 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 39 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 40 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 41 H 0.34 5.10 7.32 -89.70 -0.66 4.44 16 42 H 0.12 1.36 6.51 -2.39 -0.02 1.34 16 43 H 0.04 0.74 6.29 -2.39 -0.02 0.72 16 44 H 0.22 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.12 0.99 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -78.83 395.56 0.73 -78.10 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.36 Total: 19.00 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 7.29 Total: -4.44 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -7.00 Total: -105.92 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.88 kcal Total: -78.83 0.73 -78.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271808481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.105 kcal (2) G-P(sol) polarization free energy of solvation -78.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds