Wall clock time and date at job start Sat Apr 11 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48503 * 109.46886 * 269.99610 * 3 2 1 5 5 H 1.48502 * 109.47241 * 29.99386 * 3 2 1 6 6 H 1.48499 * 109.46901 * 149.99550 * 3 2 1 7 7 C 1.38946 * 119.99468 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99633 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00374 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99685 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00561 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99425 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.46952 * 174.44933 * 12 10 9 14 14 C 1.47019 * 111.00202 * 300.99349 * 13 12 10 15 15 C 1.53100 * 109.25605 * 182.39171 * 14 13 12 16 16 O 1.43013 * 109.25694 * 303.14369 * 15 14 13 17 17 C 1.43012 * 113.73777 * 58.67515 * 16 15 14 18 18 C 1.47022 * 110.99808 * 64.61992 * 13 12 10 19 19 H 1.08995 * 109.54517 * 297.56988 * 18 13 12 20 20 C 1.53002 * 109.50210 * 57.67668 * 18 13 12 21 21 N 1.46499 * 109.47595 * 54.23114 * 20 18 13 22 22 C 1.34777 * 120.00259 * 174.95327 * 21 20 18 23 23 O 1.21277 * 119.99808 * 359.97438 * 22 21 20 24 24 C 1.50696 * 119.99914 * 180.02562 * 22 21 20 25 25 H 1.08999 * 111.01953 * 297.23091 * 24 22 21 26 26 C 1.55309 * 111.12187 * 173.01044 * 24 22 21 27 27 C 1.54386 * 102.25056 * 207.94670 * 26 24 22 28 28 O 1.43238 * 107.59053 * 21.35520 * 27 26 24 29 29 C 1.43645 * 109.96945 * 1.71461 * 28 27 26 30 30 H 0.97001 * 119.99659 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99969 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47106 * 54.45746 * 12 10 9 33 33 H 1.08991 * 109.47467 * 294.45113 * 12 10 9 34 34 H 1.08996 * 109.51039 * 62.45643 * 14 13 12 35 35 H 1.08997 * 109.50211 * 302.32261 * 14 13 12 36 36 H 1.09003 * 109.50397 * 183.21072 * 15 14 13 37 37 H 1.09003 * 109.50711 * 63.08111 * 15 14 13 38 38 H 1.09002 * 109.51013 * 181.39134 * 17 16 15 39 39 H 1.09003 * 109.50918 * 61.26266 * 17 16 15 40 40 H 1.09008 * 109.47145 * 294.23282 * 20 18 13 41 41 H 1.08994 * 109.47142 * 174.23770 * 20 18 13 42 42 H 0.97000 * 119.99746 * 354.95530 * 21 20 18 43 43 H 1.08999 * 110.84917 * 89.76150 * 26 24 22 44 44 H 1.08994 * 110.84661 * 326.13510 * 26 24 22 45 45 H 1.08998 * 109.82882 * 261.84628 * 27 26 24 46 46 H 1.08998 * 109.90450 * 140.91061 * 27 26 24 47 47 H 1.08999 * 110.31229 * 94.48556 * 29 28 27 48 48 H 1.09003 * 110.30995 * 216.65497 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1924 -5.9764 -0.1330 14 6 2.9700 -5.8593 -1.3752 15 6 3.9012 -7.0677 -1.5038 16 8 4.7380 -7.1437 -0.3465 17 6 4.0135 -7.2591 0.8812 18 6 3.0835 -6.0526 1.0340 19 1 3.6775 -5.1411 1.0994 20 6 2.2474 -6.2099 2.3057 21 7 1.3509 -7.3596 2.1617 22 6 0.5883 -7.7539 3.2007 23 8 0.6446 -7.1571 4.2550 24 6 -0.3333 -8.9369 3.0527 25 1 -1.0949 -8.7470 2.2964 26 6 -0.9783 -9.3175 4.4133 27 6 -1.2349 -10.8303 4.2424 28 8 -0.3617 -11.3036 3.2103 29 6 0.4617 -10.2278 2.7328 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3907 0.0005 32 1 0.5442 -4.8791 -0.8348 33 1 0.6939 -4.9648 0.9368 34 1 3.5623 -4.9446 -1.3490 35 1 2.2916 -5.8302 -2.2278 36 1 4.5204 -6.9570 -2.3940 37 1 3.3071 -7.9781 -1.5838 38 1 4.7139 -7.2868 1.7159 39 1 3.4227 -8.1750 0.8705 40 1 1.6577 -5.3074 2.4668 41 1 2.9083 -6.3689 3.1577 42 1 1.3062 -7.8372 1.3186 43 1 -1.9146 -8.7798 4.5627 44 1 -0.2874 -9.1317 5.2356 45 1 -2.2726 -10.9992 3.9550 46 1 -1.0203 -11.3508 5.1757 47 1 1.4181 -10.2225 3.2558 48 1 0.6180 -10.3192 1.6579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272842441.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:17 Heat of formation + Delta-G solvation = -148.452052 kcal Electronic energy + Delta-G solvation = -31344.684937 eV Core-core repulsion = 27014.026309 eV Total energy + Delta-G solvation = -4330.658628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.65603 -39.97615 -38.57024 -37.99903 -35.79930 -34.53718 -33.72138 -32.65403 -31.43823 -31.30201 -29.66880 -28.98490 -26.60821 -25.48850 -23.79440 -23.72517 -22.64452 -22.12512 -20.40482 -20.00977 -19.20208 -18.00626 -17.78771 -16.99882 -16.54058 -16.30795 -16.12691 -15.92887 -15.42341 -15.28473 -14.95016 -14.73977 -14.57914 -14.35064 -14.11678 -13.91406 -13.83496 -13.74397 -13.50340 -13.20078 -12.82440 -12.36277 -12.04037 -11.95319 -11.78569 -11.67362 -11.61682 -11.56750 -11.26033 -11.24319 -10.98988 -10.74063 -10.49929 -10.43233 -10.31373 -9.95346 -9.87050 -9.62232 -9.55890 -9.35625 -9.00622 -8.09430 -7.63430 -6.53980 -3.95590 2.50541 3.02538 3.08957 3.19574 3.24995 3.55907 3.70698 3.91887 3.99857 4.04809 4.08052 4.51036 4.57531 4.80660 4.82305 4.83828 4.89441 4.93302 5.01108 5.10359 5.19931 5.28611 5.31024 5.39694 5.42605 5.46542 5.48334 5.61109 5.63565 5.72737 5.79420 5.79841 5.81487 5.94585 6.02002 6.07945 6.25142 6.45289 6.56015 6.58274 7.05808 7.10638 7.25055 7.43321 7.47733 7.91291 8.14544 8.44989 9.03822 9.38608 9.88116 10.62345 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.002971 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.658738 B = 9422.489165 C =10963.616714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.103 0.897 9 N -0.552 5.552 10 C 0.403 3.597 11 O -0.593 6.593 12 C 0.036 3.964 13 N -0.507 5.507 14 C -0.002 4.002 15 C 0.068 3.932 16 O -0.382 6.382 17 C 0.076 3.924 18 C 0.016 3.984 19 H 0.112 0.888 20 C 0.128 3.872 21 N -0.713 5.713 22 C 0.521 3.479 23 O -0.539 6.539 24 C -0.148 4.148 25 H 0.115 0.885 26 C -0.135 4.135 27 C 0.050 3.950 28 O -0.381 6.381 29 C 0.065 3.935 30 H 0.274 0.726 31 H 0.393 0.607 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.407 0.593 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 -19.357 2.157 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.121 0.879 9 N -0.186 5.186 10 C 0.189 3.811 11 O -0.481 6.481 12 C -0.096 4.096 13 N -0.231 5.231 14 C -0.130 4.130 15 C -0.009 4.009 16 O -0.300 6.300 17 C -0.002 4.002 18 C -0.093 4.093 19 H 0.129 0.871 20 C 0.004 3.996 21 N -0.366 5.366 22 C 0.306 3.694 23 O -0.416 6.416 24 C -0.170 4.170 25 H 0.133 0.867 26 C -0.173 4.173 27 C -0.027 4.027 28 O -0.301 6.301 29 C -0.012 4.012 30 H 0.083 0.917 31 H 0.226 0.774 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.243 0.757 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.394 -19.389 2.808 19.641 hybrid contribution -0.325 1.847 -0.373 1.912 sum -1.719 -17.542 2.435 17.794 Atomic orbital electron populations 1.69611 1.06005 1.28453 1.49564 1.25309 0.95635 0.99922 0.96850 0.85850 0.79295 0.80661 0.78470 1.20304 1.20790 1.19349 1.19717 0.93403 0.82295 1.47953 0.87876 1.42052 1.09323 1.04971 1.62261 1.20942 0.88798 0.85864 0.85522 1.90413 1.13783 1.86723 1.57136 1.22113 0.95468 0.88410 1.03588 1.62721 1.17528 1.40668 1.02221 1.23043 0.97255 1.00641 0.92018 1.22627 0.92905 0.96893 0.88432 1.87983 1.33218 1.94379 1.14438 1.22605 0.94384 0.95958 0.87206 1.22908 0.94698 1.01802 0.89862 0.87103 1.21419 0.92265 0.88856 0.97080 1.45985 1.42489 1.32895 1.15188 1.20115 0.80565 0.84815 0.83923 1.90726 1.66851 1.56321 1.27713 1.23052 0.98722 0.94486 1.00699 0.86709 1.23003 1.02556 0.95053 0.96715 1.23194 0.94452 0.93665 0.91366 1.88414 1.53142 1.33733 1.54783 1.23316 0.93744 0.83770 1.00370 0.91655 0.77388 0.89213 0.89019 0.89260 0.90569 0.88915 0.93186 0.88869 0.93245 0.90928 0.90702 0.75667 0.89355 0.89131 0.90984 0.91111 0.91606 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.76 13.05 55.50 0.72 -23.03 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 8 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 9 N -0.55 -13.25 5.29 -10.96 -0.06 -13.31 16 10 C 0.40 8.66 7.15 -10.98 -0.08 8.58 16 11 O -0.59 -14.34 11.16 5.55 0.06 -14.28 16 12 C 0.04 0.57 5.55 -4.97 -0.03 0.54 16 13 N -0.51 -7.12 4.08 -227.77 -0.93 -8.05 16 14 C 0.00 -0.03 5.25 -3.71 -0.02 -0.05 16 15 C 0.07 0.85 7.01 37.21 0.26 1.11 16 16 O -0.38 -5.55 10.83 -35.23 -0.38 -5.93 16 17 C 0.08 0.95 6.20 37.21 0.23 1.18 16 18 C 0.02 0.23 1.91 -67.59 -0.13 0.10 16 19 H 0.11 2.08 5.62 -51.93 -0.29 1.79 16 20 C 0.13 1.72 4.67 -4.04 -0.02 1.70 16 21 N -0.71 -7.80 5.00 -60.29 -0.30 -8.10 16 22 C 0.52 6.20 7.16 -10.99 -0.08 6.12 16 23 O -0.54 -8.62 15.79 5.56 0.09 -8.53 16 24 C -0.15 -1.31 3.49 -89.52 -0.31 -1.62 16 25 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 26 C -0.14 -1.18 6.12 -24.78 -0.15 -1.33 16 27 C 0.05 0.39 7.79 37.88 0.30 0.69 16 28 O -0.38 -3.78 11.36 -35.23 -0.40 -4.18 16 29 C 0.06 0.54 7.21 38.19 0.28 0.81 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.09 1.41 6.14 -51.93 -0.32 1.09 16 34 H 0.09 1.70 5.54 -51.93 -0.29 1.41 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.52 7.27 -51.93 -0.38 0.14 16 40 H 0.07 1.15 6.61 -51.92 -0.34 0.81 16 41 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 42 H 0.41 3.79 7.43 -40.82 -0.30 3.49 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.91 7.48 -51.93 -0.39 0.52 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16 48 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -31.51 379.16 -7.71 -39.22 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -7.21 Total: 14.79 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 0.01 Total: 10.11 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.57 Total: -52.49 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.63 Total: -32.92 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.51 -7.71 -39.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272842441.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.235 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds