Wall clock time and date at job start Sat Apr 11 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48503 * 109.46886 * 269.99610 * 3 2 1 5 5 H 1.48502 * 109.47241 * 29.99386 * 3 2 1 6 6 H 1.48499 * 109.46901 * 149.99550 * 3 2 1 7 7 C 1.38946 * 119.99468 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99633 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00374 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99685 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00561 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99425 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.46952 * 174.44933 * 12 10 9 14 14 C 1.47019 * 111.00202 * 300.99349 * 13 12 10 15 15 C 1.53100 * 109.25605 * 182.39171 * 14 13 12 16 16 O 1.43013 * 109.25694 * 303.14369 * 15 14 13 17 17 C 1.43012 * 113.73777 * 58.67515 * 16 15 14 18 18 C 1.47022 * 110.99808 * 64.61992 * 13 12 10 19 19 H 1.08995 * 109.54517 * 297.56988 * 18 13 12 20 20 C 1.53002 * 109.50210 * 57.67668 * 18 13 12 21 21 N 1.46499 * 109.47595 * 54.23114 * 20 18 13 22 22 C 1.34777 * 120.00259 * 174.95327 * 21 20 18 23 23 O 1.21277 * 119.99808 * 359.97438 * 22 21 20 24 24 C 1.50696 * 119.99914 * 180.02562 * 22 21 20 25 25 H 1.08999 * 111.01953 * 297.23091 * 24 22 21 26 26 C 1.55309 * 111.12187 * 173.01044 * 24 22 21 27 27 C 1.54386 * 102.25056 * 207.94670 * 26 24 22 28 28 O 1.43238 * 107.59053 * 21.35520 * 27 26 24 29 29 C 1.43645 * 109.96945 * 1.71461 * 28 27 26 30 30 H 0.97001 * 119.99659 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99969 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47106 * 54.45746 * 12 10 9 33 33 H 1.08991 * 109.47467 * 294.45113 * 12 10 9 34 34 H 1.08996 * 109.51039 * 62.45643 * 14 13 12 35 35 H 1.08997 * 109.50211 * 302.32261 * 14 13 12 36 36 H 1.09003 * 109.50397 * 183.21072 * 15 14 13 37 37 H 1.09003 * 109.50711 * 63.08111 * 15 14 13 38 38 H 1.09002 * 109.51013 * 181.39134 * 17 16 15 39 39 H 1.09003 * 109.50918 * 61.26266 * 17 16 15 40 40 H 1.09008 * 109.47145 * 294.23282 * 20 18 13 41 41 H 1.08994 * 109.47142 * 174.23770 * 20 18 13 42 42 H 0.97000 * 119.99746 * 354.95530 * 21 20 18 43 43 H 1.08999 * 110.84917 * 89.76150 * 26 24 22 44 44 H 1.08994 * 110.84661 * 326.13510 * 26 24 22 45 45 H 1.08998 * 109.82882 * 261.84628 * 27 26 24 46 46 H 1.08998 * 109.90450 * 140.91061 * 27 26 24 47 47 H 1.08999 * 110.31229 * 94.48556 * 29 28 27 48 48 H 1.09003 * 110.30995 * 216.65497 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1924 -5.9764 -0.1330 14 6 2.9700 -5.8593 -1.3752 15 6 3.9012 -7.0677 -1.5038 16 8 4.7380 -7.1437 -0.3465 17 6 4.0135 -7.2591 0.8812 18 6 3.0835 -6.0526 1.0340 19 1 3.6775 -5.1411 1.0994 20 6 2.2474 -6.2099 2.3057 21 7 1.3509 -7.3596 2.1617 22 6 0.5883 -7.7539 3.2007 23 8 0.6446 -7.1571 4.2550 24 6 -0.3333 -8.9369 3.0527 25 1 -1.0949 -8.7470 2.2964 26 6 -0.9783 -9.3175 4.4133 27 6 -1.2349 -10.8303 4.2424 28 8 -0.3617 -11.3036 3.2103 29 6 0.4617 -10.2278 2.7328 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3907 0.0005 32 1 0.5442 -4.8791 -0.8348 33 1 0.6939 -4.9648 0.9368 34 1 3.5623 -4.9446 -1.3490 35 1 2.2916 -5.8302 -2.2278 36 1 4.5204 -6.9570 -2.3940 37 1 3.3071 -7.9781 -1.5838 38 1 4.7139 -7.2868 1.7159 39 1 3.4227 -8.1750 0.8705 40 1 1.6577 -5.3074 2.4668 41 1 2.9083 -6.3689 3.1577 42 1 1.3062 -7.8372 1.3186 43 1 -1.9146 -8.7798 4.5627 44 1 -0.2874 -9.1317 5.2356 45 1 -2.2726 -10.9992 3.9550 46 1 -1.0203 -11.3508 5.1757 47 1 1.4181 -10.2225 3.2558 48 1 0.6180 -10.3192 1.6579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272842441.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:16 Heat of formation + Delta-G solvation = -174.887490 kcal Electronic energy + Delta-G solvation = -31345.831263 eV Core-core repulsion = 27014.026309 eV Total energy + Delta-G solvation = -4331.804955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74025 -41.06164 -39.64618 -39.32784 -37.03915 -36.09338 -35.22724 -33.45716 -33.36596 -32.30096 -30.49315 -30.19015 -27.77752 -27.06330 -25.25977 -24.57303 -23.56209 -22.95886 -21.60664 -21.16599 -20.74245 -19.81708 -18.69070 -17.89320 -17.70076 -17.63988 -17.38219 -16.96818 -16.58343 -16.26389 -16.22386 -15.92960 -15.82064 -15.65481 -15.47453 -15.29737 -15.18908 -14.65963 -14.49699 -14.36871 -13.98365 -13.59621 -13.33260 -13.22496 -13.13842 -12.98461 -12.80308 -12.48237 -12.42913 -12.39949 -12.18304 -12.16066 -11.97317 -11.90635 -11.50675 -11.38941 -11.08685 -10.94982 -10.62154 -10.51392 -10.07201 -10.03635 -9.15365 -8.51099 -6.00666 1.32106 1.37432 1.49350 1.55877 1.94617 2.10426 2.24845 2.74375 2.92140 2.96481 3.15144 3.20032 3.29673 3.71182 3.78961 3.84539 3.91536 4.02414 4.16906 4.19848 4.24510 4.28764 4.31644 4.33322 4.47068 4.50747 4.59523 4.62053 4.67764 4.72323 4.76762 4.80015 4.88254 4.93981 4.97529 5.04715 5.14521 5.24265 5.35885 5.39228 5.74721 5.87104 5.95837 5.96110 6.23032 6.52732 6.56120 7.06890 7.22102 7.49594 8.03983 8.64466 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.002971 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.658738 B = 9422.489165 C =10963.616714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.989 3.011 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.568 5.568 10 C 0.407 3.593 11 O -0.619 6.619 12 C 0.047 3.953 13 N -0.483 5.483 14 C -0.002 4.002 15 C 0.071 3.929 16 O -0.404 6.404 17 C 0.079 3.921 18 C 0.023 3.977 19 H 0.064 0.936 20 C 0.139 3.861 21 N -0.698 5.698 22 C 0.522 3.478 23 O -0.584 6.584 24 C -0.140 4.140 25 H 0.137 0.863 26 C -0.137 4.137 27 C 0.051 3.949 28 O -0.398 6.398 29 C 0.067 3.933 30 H 0.278 0.722 31 H 0.395 0.605 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.420 0.580 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 -21.561 1.250 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.813 3.187 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.205 5.205 10 C 0.194 3.806 11 O -0.507 6.507 12 C -0.085 4.085 13 N -0.206 5.206 14 C -0.130 4.130 15 C -0.006 4.006 16 O -0.323 6.323 17 C 0.002 3.998 18 C -0.087 4.087 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.351 5.351 22 C 0.309 3.691 23 O -0.464 6.464 24 C -0.162 4.162 25 H 0.155 0.845 26 C -0.175 4.175 27 C -0.026 4.026 28 O -0.318 6.318 29 C -0.010 4.010 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.258 0.742 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.376 -21.633 1.872 21.843 hybrid contribution 0.037 2.449 -0.076 2.450 sum -2.339 -19.184 1.796 19.409 Atomic orbital electron populations 1.69667 1.06787 1.29340 1.50004 1.26014 0.96496 1.02400 0.96218 0.84979 0.77870 0.77139 0.78684 1.19518 1.19603 1.19984 1.19617 0.92578 0.84148 1.49874 0.90465 1.42129 1.09339 1.05061 1.63927 1.22050 0.88749 0.87061 0.82711 1.90436 1.15529 1.87535 1.57233 1.22160 0.95609 0.85514 1.05188 1.62821 1.17012 1.38596 1.02159 1.23053 0.97512 0.99860 0.92609 1.22759 0.92781 0.96797 0.88250 1.87965 1.34479 1.94416 1.15400 1.22692 0.94349 0.95783 0.87019 1.22745 0.94673 1.00971 0.90270 0.91867 1.21105 0.92125 0.88818 0.96573 1.45804 1.41697 1.31881 1.15697 1.20651 0.80308 0.85065 0.83065 1.90717 1.68215 1.57964 1.29485 1.23056 0.98481 0.93204 1.01420 0.84514 1.22997 1.02409 0.95980 0.96085 1.23276 0.95067 0.92776 0.91431 1.88398 1.53631 1.34529 1.55256 1.23400 0.93108 0.82818 1.01680 0.91256 0.77128 0.86710 0.87912 0.94059 0.88770 0.87708 0.90023 0.88180 0.90186 0.93649 0.90788 0.74200 0.88674 0.91057 0.89337 0.90563 0.92141 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.03 13.05 21.66 0.28 -48.74 16 2 C -0.01 -0.58 5.50 84.92 0.47 -0.12 16 3 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.33 -18.49 9.68 84.04 0.81 -17.68 16 8 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 9 N -0.57 -28.16 5.29 -306.97 -1.62 -29.78 16 10 C 0.41 17.96 7.15 87.66 0.63 18.59 16 11 O -0.62 -31.36 11.16 -3.05 -0.03 -31.39 16 12 C 0.05 1.46 5.55 85.56 0.48 1.93 16 13 N -0.48 -12.82 4.08 -874.52 -3.57 -16.39 16 14 C 0.00 -0.06 5.25 86.31 0.45 0.39 16 15 C 0.07 1.58 7.01 72.02 0.50 2.08 16 16 O -0.40 -11.03 10.83 -148.98 -1.61 -12.64 16 17 C 0.08 1.82 6.20 72.01 0.45 2.26 16 18 C 0.02 0.64 1.91 44.93 0.09 0.73 16 19 H 0.06 2.48 5.62 -2.39 -0.01 2.47 16 20 C 0.14 3.69 4.67 86.38 0.40 4.09 16 21 N -0.70 -13.89 5.00 -463.06 -2.32 -16.20 16 22 C 0.52 11.66 7.16 87.66 0.63 12.28 16 23 O -0.58 -18.60 15.79 -3.02 -0.05 -18.65 16 24 C -0.14 -2.13 3.49 -10.08 -0.04 -2.17 16 25 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 26 C -0.14 -2.16 6.12 31.86 0.20 -1.97 16 27 C 0.05 0.68 7.79 72.45 0.56 1.25 16 28 O -0.40 -6.82 11.36 -148.98 -1.69 -8.51 16 29 C 0.07 0.90 7.21 72.65 0.52 1.43 16 30 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 31 H 0.40 18.82 7.90 -92.71 -0.73 18.08 16 32 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.10 3.05 6.14 -2.39 -0.01 3.04 16 34 H 0.04 1.60 5.54 -2.39 -0.01 1.59 16 35 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 1.38 7.27 -2.39 -0.02 1.36 16 40 H 0.05 1.47 6.61 -2.38 -0.02 1.46 16 41 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 42 H 0.42 6.34 7.43 -92.71 -0.69 5.65 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 44 H 0.07 1.41 7.48 -2.39 -0.02 1.40 16 45 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 0.89 8.02 -2.39 -0.02 0.87 16 48 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -71.69 379.16 -2.85 -74.54 By element: Atomic # 1 Polarization: 40.29 SS G_CDS: -0.42 Total: 39.87 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 6.15 Total: 23.10 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -7.23 Total: -111.12 kcal Atomic # 8 Polarization: -67.81 SS G_CDS: -3.39 Total: -71.19 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.69 -2.85 -74.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272842441.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.344 kcal (2) G-P(sol) polarization free energy of solvation -71.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds