Wall clock time and date at job start Sat Apr 11 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 120.00001 * 2 1 4 4 H 1.48497 * 109.47422 * 270.00304 * 3 2 1 5 5 H 1.48501 * 109.47003 * 30.00264 * 3 2 1 6 6 H 1.48500 * 109.47146 * 150.00296 * 3 2 1 7 7 C 1.38952 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99912 * 359.97438 * 7 2 1 9 9 N 1.37093 * 119.99452 * 179.97438 * 7 2 1 10 10 C 1.34780 * 119.99865 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99785 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00407 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47603 * 174.09097 * 12 10 9 14 14 C 1.47016 * 110.99610 * 293.59589 * 13 12 10 15 15 C 1.53097 * 109.25615 * 177.60381 * 14 13 12 16 16 O 1.43016 * 109.25782 * 56.84976 * 15 14 13 17 17 C 1.43012 * 113.73935 * 301.33348 * 16 15 14 18 18 C 1.47009 * 111.00077 * 169.96271 * 13 12 10 19 19 H 1.08999 * 109.51200 * 62.45911 * 18 13 12 20 20 C 1.53002 * 109.51100 * 302.36725 * 18 13 12 21 21 N 1.46501 * 109.46956 * 305.75191 * 20 18 13 22 22 C 1.34778 * 119.99787 * 184.98322 * 21 20 18 23 23 O 1.21276 * 120.00050 * 359.97438 * 22 21 20 24 24 C 1.50696 * 119.99739 * 180.02562 * 22 21 20 25 25 H 1.08999 * 110.46371 * 59.29917 * 24 22 21 26 26 C 1.54516 * 110.50983 * 181.90326 * 24 22 21 27 27 C 1.54477 * 104.06332 * 118.64237 * 26 24 22 28 28 O 1.44426 * 104.80295 * 23.97958 * 27 26 24 29 29 C 1.44640 * 105.36759 * 319.56286 * 28 27 26 30 30 H 0.97002 * 119.99738 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00533 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47183 * 54.08523 * 12 10 9 33 33 H 1.09001 * 109.47053 * 294.09139 * 12 10 9 34 34 H 1.09000 * 109.50284 * 57.67654 * 14 13 12 35 35 H 1.08995 * 109.54642 * 297.56052 * 14 13 12 36 36 H 1.08999 * 109.50856 * 296.92179 * 15 14 13 37 37 H 1.09000 * 109.50747 * 176.78196 * 15 14 13 38 38 H 1.09007 * 109.50813 * 178.60660 * 17 16 15 39 39 H 1.08999 * 109.50572 * 298.72662 * 17 16 15 40 40 H 1.09003 * 109.46546 * 65.74865 * 20 18 13 41 41 H 1.08993 * 109.47487 * 185.74526 * 20 18 13 42 42 H 0.96997 * 120.00460 * 4.98225 * 21 20 18 43 43 H 1.09000 * 110.51308 * 237.28853 * 26 24 22 44 44 H 1.08999 * 110.50681 * 359.85767 * 26 24 22 45 45 H 1.08994 * 110.37292 * 142.81185 * 27 26 24 46 46 H 1.09001 * 110.37429 * 265.14721 * 27 26 24 47 47 H 1.09004 * 110.34378 * 281.59129 * 29 28 27 48 48 H 1.09007 * 110.50720 * 159.18671 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3706 -0.0011 13 7 6.0504 -3.7482 0.1415 14 6 5.7080 -4.2949 1.4626 15 6 6.1829 -5.7480 1.5463 16 8 7.5882 -5.8006 1.2861 17 6 7.9571 -5.2766 0.0076 18 6 7.5001 -3.8188 -0.0917 19 1 8.0191 -3.2229 0.6591 20 6 7.8205 -3.2759 -1.4858 21 7 7.0193 -3.9892 -2.4836 22 6 7.2076 -3.7485 -3.7962 23 8 8.0398 -2.9410 -4.1514 24 6 6.3830 -4.4818 -4.8226 25 1 5.3219 -4.2845 -4.6705 26 6 6.8100 -4.0754 -6.2509 27 6 7.3030 -5.3949 -6.8850 28 8 6.6342 -6.4352 -6.1391 29 6 6.6658 -5.9992 -4.7604 30 1 -0.4850 0.8401 0.0004 31 1 3.8648 -0.3633 -0.0014 32 1 5.9240 -1.7678 0.8312 33 1 5.9240 -1.9512 -0.9392 34 1 4.6278 -4.2564 1.6036 35 1 6.1976 -3.7068 2.2387 36 1 5.6531 -6.3473 0.8058 37 1 5.9825 -6.1396 2.5436 38 1 9.0399 -5.3274 -0.1079 39 1 7.4789 -5.8623 -0.7775 40 1 7.5857 -2.2122 -1.5242 41 1 8.8795 -3.4221 -1.6981 42 1 6.3534 -4.6348 -2.1996 43 1 5.9594 -3.6794 -6.8057 44 1 7.6158 -3.3422 -6.2145 45 1 7.0194 -5.4397 -7.9365 46 1 8.3839 -5.4866 -6.7784 47 1 7.6486 -6.1846 -4.3267 48 1 5.8932 -6.5057 -4.1818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272842442.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:20 Heat of formation + Delta-G solvation = -141.592752 kcal Electronic energy + Delta-G solvation = -31395.300529 eV Core-core repulsion = 27064.939342 eV Total energy + Delta-G solvation = -4330.361187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70703 -39.95187 -38.48175 -38.23333 -36.09710 -34.60813 -33.87206 -32.55431 -31.76088 -31.43265 -29.54975 -29.18986 -26.77832 -25.70191 -23.81183 -23.67747 -22.87777 -22.19740 -20.22684 -19.94179 -19.43941 -18.41028 -17.83473 -16.88446 -16.83090 -16.36393 -15.95290 -15.88999 -15.64554 -15.33471 -15.17252 -15.01013 -14.90117 -14.51744 -14.21279 -13.94579 -13.75780 -13.60941 -13.20148 -13.14477 -12.97591 -12.58368 -12.33622 -12.22636 -11.99644 -11.94371 -11.67043 -11.56485 -11.43615 -11.33707 -11.02458 -11.00012 -10.65952 -10.59868 -10.08869 -10.05502 -9.95181 -9.81326 -9.61710 -9.13704 -8.71262 -8.28227 -8.20942 -6.38608 -3.90362 2.47978 2.96612 2.98633 3.01868 3.10417 3.57049 3.62678 3.72189 3.76092 4.03697 4.20325 4.46884 4.48373 4.57607 4.66156 4.69636 4.85661 4.92079 4.97550 5.02492 5.09609 5.12123 5.20167 5.30013 5.35464 5.42005 5.42531 5.47025 5.52501 5.54194 5.60717 5.65717 5.69119 5.77337 5.81485 5.82029 5.94513 6.07217 6.30009 6.47466 6.86620 6.91699 7.06915 7.41734 7.49619 8.05566 8.08878 8.51277 8.86821 9.34105 9.73165 10.74197 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008680 B = 0.003722 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.150212 B = 7521.161308 C = 9470.659271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.043 3.957 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.588 5.588 10 C 0.452 3.548 11 O -0.560 6.560 12 C 0.037 3.963 13 N -0.507 5.507 14 C 0.018 3.982 15 C 0.065 3.935 16 O -0.387 6.387 17 C 0.073 3.927 18 C 0.031 3.969 19 H 0.066 0.934 20 C 0.126 3.874 21 N -0.713 5.713 22 C 0.523 3.477 23 O -0.544 6.544 24 C -0.147 4.147 25 H 0.115 0.885 26 C -0.146 4.146 27 C 0.045 3.955 28 O -0.372 6.372 29 C 0.059 3.941 30 H 0.274 0.726 31 H 0.370 0.630 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.413 0.587 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.804 -8.395 -4.829 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.138 0.862 9 N -0.228 5.228 10 C 0.237 3.763 11 O -0.442 6.442 12 C -0.094 4.094 13 N -0.233 5.233 14 C -0.110 4.110 15 C -0.012 4.012 16 O -0.305 6.305 17 C -0.004 4.004 18 C -0.079 4.079 19 H 0.083 0.917 20 C 0.002 3.998 21 N -0.366 5.366 22 C 0.309 3.691 23 O -0.422 6.422 24 C -0.169 4.169 25 H 0.133 0.867 26 C -0.184 4.184 27 C -0.032 4.032 28 O -0.291 6.291 29 C -0.019 4.019 30 H 0.085 0.915 31 H 0.202 0.798 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.250 0.750 43 H 0.100 0.900 44 H 0.119 0.881 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.578 -8.971 -5.364 20.450 hybrid contribution 0.407 2.221 0.759 2.382 sum 17.984 -6.750 -4.605 19.753 Atomic orbital electron populations 1.69618 1.05638 1.27593 1.48980 1.25035 0.95477 0.97973 0.97509 0.86697 0.79743 0.84113 0.78982 1.19550 1.20094 1.19592 1.19407 0.79106 0.96619 1.48336 0.86207 1.42222 1.07591 1.06147 1.66791 1.19524 0.87794 0.84614 0.84337 1.90537 1.69253 1.30697 1.53725 1.22015 0.95959 0.89344 1.02117 1.61806 1.10446 1.20013 1.31013 1.22926 1.04315 0.95406 0.88350 1.22711 0.80832 0.95707 1.01914 1.87970 1.24407 1.82889 1.35265 1.22621 1.00166 0.91406 0.86210 1.22671 0.90139 0.98581 0.96469 0.91652 1.21359 0.95711 0.96809 0.85906 1.45898 1.41014 1.44650 1.05039 1.20281 0.83233 0.82443 0.83169 1.90666 1.35571 1.35418 1.80518 1.22724 1.02212 0.96652 0.95317 0.86690 1.22960 1.03353 0.99149 0.92948 1.23460 0.96839 0.85948 0.96930 1.89171 1.78662 1.43433 1.17807 1.23390 1.02118 0.91376 0.84995 0.91531 0.79763 0.93224 0.88786 0.86986 0.94582 0.91868 0.88471 0.88529 0.92270 0.91039 0.90417 0.74977 0.90038 0.88091 0.88821 0.92147 0.91880 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.09 13.96 55.50 0.77 -24.31 16 2 C 0.04 1.16 5.50 -17.46 -0.10 1.06 16 3 Si 0.88 19.01 27.74 -169.99 -4.71 14.29 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 7 C -0.31 -8.33 10.16 -14.93 -0.15 -8.48 16 8 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 9 N -0.59 -13.36 5.09 -10.96 -0.06 -13.42 16 10 C 0.45 9.46 7.36 -10.99 -0.08 9.38 16 11 O -0.56 -13.57 14.24 5.54 0.08 -13.49 16 12 C 0.04 0.56 5.23 -4.98 -0.03 0.54 16 13 N -0.51 -6.81 3.57 -227.78 -0.81 -7.62 16 14 C 0.02 0.24 5.30 -3.71 -0.02 0.22 16 15 C 0.07 0.76 7.01 37.21 0.26 1.02 16 16 O -0.39 -4.59 10.83 -35.23 -0.38 -4.97 16 17 C 0.07 0.72 6.21 37.21 0.23 0.95 16 18 C 0.03 0.32 2.25 -67.60 -0.15 0.17 16 19 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 20 C 0.13 1.31 4.69 -4.04 -0.02 1.29 16 21 N -0.71 -7.74 5.01 -60.30 -0.30 -8.05 16 22 C 0.52 6.33 7.03 -10.99 -0.08 6.25 16 23 O -0.54 -8.17 15.28 5.56 0.08 -8.09 16 24 C -0.15 -1.54 3.50 -90.20 -0.32 -1.85 16 25 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 26 C -0.15 -1.45 6.67 -25.16 -0.17 -1.62 16 27 C 0.04 0.41 7.64 37.93 0.29 0.70 16 28 O -0.37 -4.15 11.65 -35.23 -0.41 -4.57 16 29 C 0.06 0.55 7.17 37.93 0.27 0.83 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16 32 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 33 H 0.09 1.33 5.88 -51.93 -0.31 1.03 16 34 H 0.11 1.89 6.09 -51.93 -0.32 1.58 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.56 7.27 -51.93 -0.38 0.18 16 40 H 0.07 0.81 6.49 -51.93 -0.34 0.47 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.41 4.45 7.43 -40.82 -0.30 4.15 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.10 1.12 6.50 -51.93 -0.34 0.78 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.56 7.86 -51.93 -0.41 0.15 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -32.79 380.47 -7.31 -40.10 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -7.25 Total: 13.94 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -0.05 Total: 10.45 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.40 Total: -53.40 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.63 Total: -31.12 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.79 -7.31 -40.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272842442.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.494 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds