Wall clock time and date at job start Sat Apr 11 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48495 * 109.47098 * 240.00248 * 3 2 1 5 5 H 1.48502 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46679 * 120.00285 * 3 2 1 7 7 C 1.38953 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99500 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00350 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00429 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99518 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00352 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47022 * 180.02562 * 12 10 9 14 14 C 1.47005 * 111.00045 * 284.26622 * 13 12 10 15 15 C 1.53102 * 109.25740 * 177.60907 * 14 13 12 16 16 O 1.43015 * 109.25811 * 56.84694 * 15 14 13 17 17 C 1.43014 * 113.74028 * 301.33501 * 16 15 14 18 18 C 1.47018 * 110.99766 * 160.62958 * 13 12 10 19 19 H 1.08996 * 109.50427 * 62.41687 * 18 13 12 20 20 C 1.53001 * 109.50911 * 302.33033 * 18 13 12 21 21 N 1.46505 * 109.47100 * 305.99843 * 20 18 13 22 22 C 1.34768 * 119.99935 * 185.13623 * 21 20 18 23 23 O 1.21283 * 120.00177 * 0.02562 * 22 21 20 24 24 C 1.50700 * 120.00086 * 179.97438 * 22 21 20 25 25 H 1.08993 * 110.44114 * 298.91435 * 24 22 21 26 26 C 1.54812 * 110.49045 * 176.21932 * 24 22 21 27 27 C 1.54990 * 102.09671 * 220.44660 * 26 24 22 28 28 O 1.44380 * 103.48660 * 37.02657 * 27 26 24 29 29 C 1.43738 * 106.97776 * 319.93470 * 28 27 26 30 30 H 0.97001 * 119.99368 * 359.97438 * 1 2 3 31 31 H 0.97007 * 120.00149 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46523 * 60.00747 * 12 10 9 33 33 H 1.09004 * 109.47080 * 300.00618 * 12 10 9 34 34 H 1.09004 * 109.50997 * 57.67888 * 14 13 12 35 35 H 1.08996 * 109.51068 * 297.53927 * 14 13 12 36 36 H 1.08997 * 109.50732 * 176.78624 * 15 14 13 37 37 H 1.09004 * 109.50306 * 296.91198 * 15 14 13 38 38 H 1.09010 * 109.50298 * 298.73259 * 17 16 15 39 39 H 1.09002 * 109.54445 * 178.63075 * 17 16 15 40 40 H 1.09006 * 109.46843 * 65.99508 * 20 18 13 41 41 H 1.08999 * 109.47283 * 185.99429 * 20 18 13 42 42 H 0.96999 * 119.99966 * 5.13199 * 21 20 18 43 43 H 1.08999 * 110.90817 * 338.65431 * 26 24 22 44 44 H 1.09006 * 110.90257 * 102.24836 * 26 24 22 45 45 H 1.08999 * 110.62081 * 278.52794 * 27 26 24 46 46 H 1.08995 * 110.75416 * 155.59007 * 27 26 24 47 47 H 1.08994 * 109.88491 * 267.09498 * 29 28 27 48 48 H 1.09002 * 110.00397 * 146.00934 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3235 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0026 11 8 3.2102 -3.5579 -0.0022 12 6 1.2437 -4.8630 -0.0032 13 7 2.1983 -5.9796 -0.0037 14 6 2.7978 -6.1596 -1.3339 15 6 3.8272 -7.2913 -1.2748 16 8 3.1925 -8.4822 -0.8013 17 6 2.5983 -8.3426 0.4921 18 6 1.5565 -7.2216 0.4510 19 1 0.7572 -7.4919 -0.2390 20 6 0.9746 -7.0133 1.8506 21 7 2.0216 -6.5140 2.7455 22 6 1.7658 -6.3548 4.0590 23 8 0.6690 -6.6253 4.5004 24 6 2.8429 -5.8418 4.9797 25 1 3.6950 -6.5213 4.9845 26 6 2.2873 -5.6546 6.4125 27 6 2.9523 -4.3238 6.8474 28 8 2.9535 -3.5367 5.6371 29 6 3.2840 -4.4267 4.5579 30 1 -0.4849 0.8401 0.0004 31 1 0.3534 -2.3907 -0.0016 32 1 0.6169 -4.9201 -0.8931 33 1 0.6173 -4.9213 0.8869 34 1 3.2894 -5.2361 -1.6397 35 1 2.0189 -6.4134 -2.0528 36 1 4.2330 -7.4666 -2.2712 37 1 4.6340 -7.0143 -0.5962 38 1 3.3694 -8.0962 1.2222 39 1 2.1155 -9.2781 0.7745 40 1 0.1620 -6.2884 1.8020 41 1 0.5935 -7.9613 2.2304 42 1 2.8989 -6.2981 2.3925 43 1 1.2014 -5.5609 6.3994 44 1 2.5978 -6.4745 7.0602 45 1 3.9713 -4.4987 7.1925 46 1 2.3643 -3.8338 7.6234 47 1 4.3593 -4.4112 4.3806 48 1 2.7550 -4.1280 3.6528 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272842444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:25 Heat of formation + Delta-G solvation = -146.791879 kcal Electronic energy + Delta-G solvation = -31783.825580 eV Core-core repulsion = 27453.238942 eV Total energy + Delta-G solvation = -4330.586638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.57546 -39.81400 -38.29988 -38.00710 -35.99742 -34.48068 -33.76200 -32.43956 -31.37258 -31.25126 -29.41377 -28.99067 -26.67506 -25.57259 -23.83573 -23.55752 -22.71099 -22.07816 -20.21513 -19.86745 -19.20856 -17.90322 -17.56505 -16.88347 -16.52666 -16.42602 -16.07894 -15.88457 -15.46612 -15.11729 -14.93633 -14.68532 -14.63554 -14.48309 -14.13754 -13.84738 -13.71191 -13.46257 -13.36100 -13.03250 -12.70889 -12.29892 -12.17890 -12.05960 -11.67815 -11.54038 -11.51988 -11.40553 -11.36256 -11.13950 -11.02050 -10.87502 -10.55708 -10.44752 -10.22440 -10.05861 -9.76720 -9.52198 -9.49041 -9.00139 -8.59793 -8.07378 -7.96790 -6.42148 -3.83222 2.60848 3.11716 3.19877 3.26245 3.29928 3.67020 3.79177 3.87454 3.91065 4.20174 4.27781 4.57887 4.61313 4.72051 4.84268 4.92985 4.98769 5.03506 5.10243 5.16081 5.19210 5.21421 5.26582 5.34922 5.44409 5.53399 5.60588 5.61217 5.64303 5.67581 5.70993 5.73120 5.87476 5.89739 5.98654 6.03854 6.05493 6.21837 6.42133 6.82964 6.98862 6.99990 7.12807 7.54154 7.54254 8.04052 8.22012 8.59407 9.16782 9.52596 10.03257 10.75335 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007245 B = 0.004746 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3863.996158 B = 5898.822119 C = 8764.292106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.444 3.556 11 O -0.579 6.579 12 C 0.038 3.962 13 N -0.506 5.506 14 C 0.024 3.976 15 C 0.065 3.935 16 O -0.387 6.387 17 C 0.073 3.927 18 C 0.031 3.969 19 H 0.065 0.935 20 C 0.127 3.873 21 N -0.714 5.714 22 C 0.524 3.476 23 O -0.543 6.543 24 C -0.146 4.146 25 H 0.109 0.891 26 C -0.139 4.139 27 C 0.044 3.956 28 O -0.369 6.369 29 C 0.058 3.942 30 H 0.272 0.728 31 H 0.391 0.609 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.413 0.587 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.194 -15.892 5.733 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.229 3.771 11 O -0.463 6.463 12 C -0.093 4.093 13 N -0.232 5.232 14 C -0.104 4.104 15 C -0.012 4.012 16 O -0.306 6.306 17 C -0.004 4.004 18 C -0.078 4.078 19 H 0.083 0.917 20 C 0.002 3.998 21 N -0.367 5.367 22 C 0.309 3.691 23 O -0.421 6.421 24 C -0.168 4.168 25 H 0.127 0.873 26 C -0.177 4.177 27 C -0.033 4.033 28 O -0.287 6.287 29 C -0.020 4.020 30 H 0.082 0.918 31 H 0.224 0.776 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.055 0.945 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.250 0.750 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.088 0.912 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.414 -15.749 6.222 17.499 hybrid contribution -0.499 0.866 -0.694 1.217 sum 3.915 -14.883 5.528 16.352 Atomic orbital electron populations 1.69607 1.05954 1.28305 1.50259 1.25258 0.95606 0.99728 0.97203 0.85936 0.78808 0.80545 0.79053 1.19961 1.20976 1.19809 1.19607 0.93249 0.82138 1.47878 0.87977 1.41858 1.09173 1.04614 1.64167 1.19616 0.88380 0.84295 0.84790 1.90496 1.13471 1.86931 1.55401 1.22018 0.94019 0.91329 1.01978 1.61761 1.32416 1.02247 1.26791 1.22830 0.97690 1.00974 0.88935 1.22704 0.94564 0.83827 1.00100 1.87961 1.73642 1.35039 1.33921 1.22627 0.94779 0.97399 0.85595 1.22656 0.97180 0.92016 0.95965 0.91718 1.21367 0.90734 1.00014 0.87664 1.45881 1.16870 1.66721 1.07205 1.20267 0.88895 0.77308 0.82586 1.90677 1.24419 1.50846 1.76134 1.22748 0.98473 0.99431 0.96119 0.87332 1.23106 1.03287 0.98087 0.93185 1.23594 0.99888 0.90934 0.88846 1.88971 1.91476 1.32566 1.15704 1.23162 1.00690 0.86237 0.91869 0.91793 0.77594 0.93059 0.89056 0.87779 0.94549 0.88578 0.91931 0.92305 0.88553 0.90929 0.90482 0.75043 0.88534 0.89950 0.92203 0.88766 0.91217 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 2 C 0.02 0.64 5.50 -17.46 -0.10 0.54 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.17 9.68 -14.94 -0.14 -8.31 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 10 C 0.44 9.82 7.53 -10.98 -0.08 9.73 16 11 O -0.58 -14.32 14.72 5.55 0.08 -14.24 16 12 C 0.04 0.62 5.33 -4.97 -0.03 0.60 16 13 N -0.51 -7.21 3.42 -227.78 -0.78 -7.99 16 14 C 0.02 0.33 5.31 -3.71 -0.02 0.31 16 15 C 0.06 0.77 7.01 37.21 0.26 1.03 16 16 O -0.39 -4.73 10.83 -35.23 -0.38 -5.11 16 17 C 0.07 0.76 6.21 37.20 0.23 0.99 16 18 C 0.03 0.36 2.25 -67.60 -0.15 0.20 16 19 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 20 C 0.13 1.48 4.74 -4.04 -0.02 1.46 16 21 N -0.71 -8.76 4.88 -60.29 -0.29 -9.06 16 22 C 0.52 7.14 6.98 -10.99 -0.08 7.07 16 23 O -0.54 -9.10 15.46 5.56 0.09 -9.01 16 24 C -0.15 -1.67 3.44 -90.24 -0.31 -1.98 16 25 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 26 C -0.14 -1.52 6.50 -24.73 -0.16 -1.68 16 27 C 0.04 0.49 7.72 38.21 0.29 0.78 16 28 O -0.37 -5.73 11.52 -35.23 -0.41 -6.14 16 29 C 0.06 0.80 7.30 37.74 0.28 1.07 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 32 H 0.05 0.80 7.99 -51.93 -0.41 0.39 16 33 H 0.09 1.45 5.55 -51.93 -0.29 1.17 16 34 H 0.10 1.74 6.74 -51.93 -0.35 1.39 16 35 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.60 7.29 -51.92 -0.38 0.22 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.95 6.32 -51.93 -0.33 0.62 16 41 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 42 H 0.41 5.02 7.42 -40.82 -0.30 4.72 16 43 H 0.10 1.27 6.93 -51.93 -0.36 0.91 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.10 1.56 7.59 -51.93 -0.39 1.17 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -32.59 384.27 -7.59 -40.18 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -7.30 Total: 15.40 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -0.03 Total: 11.82 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.41 Total: -54.70 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.62 Total: -34.50 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.59 -7.59 -40.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272842444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.614 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds