Wall clock time and date at job start Sat Apr 11 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48495 * 109.47098 * 240.00248 * 3 2 1 5 5 H 1.48502 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46679 * 120.00285 * 3 2 1 7 7 C 1.38953 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99500 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00350 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00429 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99518 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00352 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47022 * 180.02562 * 12 10 9 14 14 C 1.47005 * 111.00045 * 284.26622 * 13 12 10 15 15 C 1.53102 * 109.25740 * 177.60907 * 14 13 12 16 16 O 1.43015 * 109.25811 * 56.84694 * 15 14 13 17 17 C 1.43014 * 113.74028 * 301.33501 * 16 15 14 18 18 C 1.47018 * 110.99766 * 160.62958 * 13 12 10 19 19 H 1.08996 * 109.50427 * 62.41687 * 18 13 12 20 20 C 1.53001 * 109.50911 * 302.33033 * 18 13 12 21 21 N 1.46505 * 109.47100 * 305.99843 * 20 18 13 22 22 C 1.34768 * 119.99935 * 185.13623 * 21 20 18 23 23 O 1.21283 * 120.00177 * 0.02562 * 22 21 20 24 24 C 1.50700 * 120.00086 * 179.97438 * 22 21 20 25 25 H 1.08993 * 110.44114 * 298.91435 * 24 22 21 26 26 C 1.54812 * 110.49045 * 176.21932 * 24 22 21 27 27 C 1.54990 * 102.09671 * 220.44660 * 26 24 22 28 28 O 1.44380 * 103.48660 * 37.02657 * 27 26 24 29 29 C 1.43738 * 106.97776 * 319.93470 * 28 27 26 30 30 H 0.97001 * 119.99368 * 359.97438 * 1 2 3 31 31 H 0.97007 * 120.00149 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46523 * 60.00747 * 12 10 9 33 33 H 1.09004 * 109.47080 * 300.00618 * 12 10 9 34 34 H 1.09004 * 109.50997 * 57.67888 * 14 13 12 35 35 H 1.08996 * 109.51068 * 297.53927 * 14 13 12 36 36 H 1.08997 * 109.50732 * 176.78624 * 15 14 13 37 37 H 1.09004 * 109.50306 * 296.91198 * 15 14 13 38 38 H 1.09010 * 109.50298 * 298.73259 * 17 16 15 39 39 H 1.09002 * 109.54445 * 178.63075 * 17 16 15 40 40 H 1.09006 * 109.46843 * 65.99508 * 20 18 13 41 41 H 1.08999 * 109.47283 * 185.99429 * 20 18 13 42 42 H 0.96999 * 119.99966 * 5.13199 * 21 20 18 43 43 H 1.08999 * 110.90817 * 338.65431 * 26 24 22 44 44 H 1.09006 * 110.90257 * 102.24836 * 26 24 22 45 45 H 1.08999 * 110.62081 * 278.52794 * 27 26 24 46 46 H 1.08995 * 110.75416 * 155.59007 * 27 26 24 47 47 H 1.08994 * 109.88491 * 267.09498 * 29 28 27 48 48 H 1.09002 * 110.00397 * 146.00934 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3235 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0026 11 8 3.2102 -3.5579 -0.0022 12 6 1.2437 -4.8630 -0.0032 13 7 2.1983 -5.9796 -0.0037 14 6 2.7978 -6.1596 -1.3339 15 6 3.8272 -7.2913 -1.2748 16 8 3.1925 -8.4822 -0.8013 17 6 2.5983 -8.3426 0.4921 18 6 1.5565 -7.2216 0.4510 19 1 0.7572 -7.4919 -0.2390 20 6 0.9746 -7.0133 1.8506 21 7 2.0216 -6.5140 2.7455 22 6 1.7658 -6.3548 4.0590 23 8 0.6690 -6.6253 4.5004 24 6 2.8429 -5.8418 4.9797 25 1 3.6950 -6.5213 4.9845 26 6 2.2873 -5.6546 6.4125 27 6 2.9523 -4.3238 6.8474 28 8 2.9535 -3.5367 5.6371 29 6 3.2840 -4.4267 4.5579 30 1 -0.4849 0.8401 0.0004 31 1 0.3534 -2.3907 -0.0016 32 1 0.6169 -4.9201 -0.8931 33 1 0.6173 -4.9213 0.8869 34 1 3.2894 -5.2361 -1.6397 35 1 2.0189 -6.4134 -2.0528 36 1 4.2330 -7.4666 -2.2712 37 1 4.6340 -7.0143 -0.5962 38 1 3.3694 -8.0962 1.2222 39 1 2.1155 -9.2781 0.7745 40 1 0.1620 -6.2884 1.8020 41 1 0.5935 -7.9613 2.2304 42 1 2.8989 -6.2981 2.3925 43 1 1.2014 -5.5609 6.3994 44 1 2.5978 -6.4745 7.0602 45 1 3.9713 -4.4987 7.1925 46 1 2.3643 -3.8338 7.6234 47 1 4.3593 -4.4112 4.3806 48 1 2.7550 -4.1280 3.6528 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272842444.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:25 Heat of formation + Delta-G solvation = -173.538307 kcal Electronic energy + Delta-G solvation = -31784.985392 eV Core-core repulsion = 27453.238942 eV Total energy + Delta-G solvation = -4331.746450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63837 -40.92313 -39.72960 -39.33044 -37.11181 -36.00319 -35.34648 -33.46895 -33.25066 -32.34287 -30.50234 -30.16009 -27.79153 -27.09030 -25.35573 -24.60767 -23.69139 -23.03048 -21.28877 -21.12213 -20.70266 -19.86912 -18.58137 -18.09656 -17.58720 -17.49000 -17.28616 -17.13331 -16.60147 -16.45727 -16.23102 -15.94238 -15.80935 -15.68115 -15.63601 -15.17778 -15.05418 -14.70870 -14.63047 -14.05178 -13.92879 -13.78940 -13.46736 -13.20049 -13.05082 -12.97622 -12.76834 -12.45604 -12.42536 -12.38952 -12.34177 -12.14292 -12.11968 -11.90766 -11.53238 -11.43303 -11.12851 -10.80669 -10.58497 -10.26078 -10.04570 -9.98685 -9.37304 -8.45406 -5.93506 1.38884 1.40770 1.51112 1.53844 2.06815 2.10885 2.27740 2.57398 2.88323 2.95685 3.21265 3.32988 3.35208 3.64138 3.69811 3.75733 3.89889 3.94299 4.13347 4.14987 4.22184 4.25178 4.26580 4.31939 4.33325 4.44575 4.48093 4.59341 4.66920 4.70742 4.73677 4.75707 4.79979 4.83765 4.89587 4.90813 5.00438 5.14017 5.39725 5.41738 5.73947 5.85939 5.94166 6.04715 6.15596 6.50486 6.60590 7.14162 7.17307 7.58074 8.12567 8.71935 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007245 B = 0.004746 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3863.996158 B = 5898.822119 C = 8764.292106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.015 4.015 3 Si 0.989 3.011 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.326 4.326 8 H 0.082 0.918 9 N -0.578 5.578 10 C 0.448 3.552 11 O -0.605 6.605 12 C 0.052 3.948 13 N -0.515 5.515 14 C 0.025 3.975 15 C 0.072 3.928 16 O -0.392 6.392 17 C 0.073 3.927 18 C 0.039 3.961 19 H 0.076 0.924 20 C 0.127 3.873 21 N -0.707 5.707 22 C 0.519 3.481 23 O -0.578 6.578 24 C -0.138 4.138 25 H 0.147 0.853 26 C -0.135 4.135 27 C 0.040 3.960 28 O -0.408 6.408 29 C 0.058 3.942 30 H 0.276 0.724 31 H 0.392 0.608 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.123 0.877 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.414 0.586 43 H 0.068 0.932 44 H 0.114 0.886 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.086 0.914 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 -17.681 6.251 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.214 4.214 3 Si 0.813 3.187 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.456 4.456 8 H 0.100 0.900 9 N -0.215 5.215 10 C 0.235 3.765 11 O -0.490 6.490 12 C -0.079 4.079 13 N -0.241 5.241 14 C -0.103 4.103 15 C -0.005 4.005 16 O -0.311 6.311 17 C -0.004 4.004 18 C -0.069 4.069 19 H 0.094 0.906 20 C 0.003 3.997 21 N -0.359 5.359 22 C 0.306 3.694 23 O -0.458 6.458 24 C -0.159 4.159 25 H 0.165 0.835 26 C -0.172 4.172 27 C -0.036 4.036 28 O -0.328 6.328 29 C -0.019 4.019 30 H 0.085 0.915 31 H 0.225 0.775 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.133 0.867 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.141 0.859 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.251 0.749 43 H 0.087 0.913 44 H 0.132 0.868 45 H 0.105 0.895 46 H 0.120 0.880 47 H 0.104 0.896 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.242 -17.566 6.725 19.526 hybrid contribution -0.736 1.351 -0.846 1.755 sum 4.506 -16.216 5.879 17.827 Atomic orbital electron populations 1.69680 1.06902 1.29162 1.50735 1.26016 0.96467 1.02421 0.96530 0.85036 0.77788 0.76888 0.78954 1.19402 1.19797 1.19888 1.19588 0.92654 0.83836 1.49502 0.90020 1.41950 1.09143 1.04886 1.65522 1.20570 0.88344 0.85448 0.82167 1.90471 1.15041 1.87692 1.55796 1.21793 0.93777 0.89279 1.03025 1.61697 1.32273 1.02880 1.27246 1.22778 0.98264 1.00411 0.88835 1.22666 0.93585 0.83021 1.01180 1.87967 1.73651 1.34765 1.34687 1.22786 0.94565 0.97956 0.85054 1.22694 0.97798 0.90773 0.95659 0.90631 1.21406 0.90157 1.00332 0.87824 1.45893 1.16996 1.66040 1.07014 1.20670 0.88891 0.76745 0.83068 1.90663 1.25833 1.52575 1.76755 1.22799 0.98978 0.98473 0.95676 0.83543 1.23085 1.01563 0.99154 0.93436 1.23856 1.01714 0.90500 0.87497 1.88923 1.91835 1.34503 1.17525 1.23114 1.01082 0.87312 0.90387 0.91506 0.77519 0.91595 0.88226 0.90968 0.93814 0.86690 0.92335 0.91943 0.85944 0.92504 0.88745 0.74877 0.91294 0.86809 0.89451 0.87990 0.89578 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.90 13.05 21.67 0.28 -50.61 16 2 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.33 -18.40 9.68 84.04 0.81 -17.58 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 9 N -0.58 -29.43 5.29 -306.99 -1.62 -31.05 16 10 C 0.45 20.33 7.53 87.66 0.66 20.99 16 11 O -0.60 -30.83 14.72 -3.07 -0.05 -30.88 16 12 C 0.05 1.73 5.33 85.56 0.46 2.18 16 13 N -0.52 -14.21 3.42 -874.56 -2.99 -17.21 16 14 C 0.03 0.68 5.31 86.32 0.46 1.14 16 15 C 0.07 1.59 7.01 72.02 0.50 2.10 16 16 O -0.39 -8.48 10.83 -148.98 -1.61 -10.09 16 17 C 0.07 1.31 6.21 72.01 0.45 1.76 16 18 C 0.04 0.82 2.25 44.92 0.10 0.92 16 19 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 20 C 0.13 2.77 4.74 86.38 0.41 3.18 16 21 N -0.71 -16.67 4.88 -463.05 -2.26 -18.92 16 22 C 0.52 13.78 6.98 87.66 0.61 14.39 16 23 O -0.58 -19.21 15.46 -3.04 -0.05 -19.26 16 24 C -0.14 -2.95 3.44 -10.55 -0.04 -2.98 16 25 H 0.15 2.01 8.14 -2.39 -0.02 1.99 16 26 C -0.13 -2.73 6.50 31.89 0.21 -2.53 16 27 C 0.04 0.83 7.72 72.66 0.56 1.39 16 28 O -0.41 -12.77 11.52 -148.98 -1.72 -14.48 16 29 C 0.06 1.60 7.30 72.36 0.53 2.13 16 30 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.39 19.50 7.90 -92.70 -0.73 18.76 16 32 H 0.07 2.01 7.99 -2.39 -0.02 1.99 16 33 H 0.10 3.17 5.55 -2.39 -0.01 3.16 16 34 H 0.07 2.44 6.74 -2.39 -0.02 2.43 16 35 H 0.04 1.12 8.13 -2.39 -0.02 1.10 16 36 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.06 1.10 7.29 -2.38 -0.02 1.08 16 39 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 1.45 6.32 -2.38 -0.02 1.43 16 41 H 0.09 1.79 8.13 -2.39 -0.02 1.77 16 42 H 0.41 9.65 7.42 -92.71 -0.69 8.96 16 43 H 0.07 1.81 6.93 -2.39 -0.02 1.79 16 44 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.10 1.89 8.14 -2.39 -0.02 1.88 16 47 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.06 1.99 7.59 -2.39 -0.02 1.97 16 Total: -1.00 -72.79 384.27 -2.22 -75.00 By element: Atomic # 1 Polarization: 45.61 SS G_CDS: -0.42 Total: 45.19 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: 6.19 Total: 26.74 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -6.59 Total: -117.80 kcal Atomic # 8 Polarization: -71.29 SS G_CDS: -3.42 Total: -74.71 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.79 -2.22 -75.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272842444.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.536 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds