Wall clock time and date at job start Sat Apr 11 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47240 * 42.78175 * 3 2 1 5 5 C 1.53001 * 109.47298 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47582 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47457 * 180.02562 * 6 5 4 8 8 C 1.49414 * 110.87799 * 289.86224 * 7 6 5 9 9 C 1.54334 * 104.64155 * 207.70589 * 8 7 6 10 10 F 1.39898 * 112.95428 * 152.48928 * 9 8 7 11 11 C 1.51363 * 108.24098 * 278.31706 * 9 8 7 12 12 O 1.21281 * 124.66437 * 302.61354 * 11 9 8 13 13 N 1.34145 * 110.67765 * 122.59411 * 11 9 8 14 14 C 1.46496 * 124.27191 * 182.28800 * 13 11 9 15 15 C 1.52998 * 109.47238 * 90.02377 * 14 13 11 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72505 * 16 15 14 19 19 N 1.31515 * 119.99684 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46683 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47426 * 119.99743 * 20 18 16 23 23 H 1.48501 * 109.46833 * 239.99986 * 20 18 16 24 24 C 1.46595 * 111.45071 * 2.54761 * 13 11 9 25 25 C 1.53976 * 105.97719 * 344.09678 * 24 13 11 26 26 F 1.39903 * 112.10817 * 142.53868 * 25 24 13 27 27 C 1.47305 * 111.00192 * 170.00323 * 7 6 5 28 28 H 1.09005 * 109.47009 * 282.78140 * 3 2 1 29 29 H 1.08994 * 109.47162 * 162.78158 * 3 2 1 30 30 H 1.08997 * 109.47749 * 60.00011 * 4 3 2 31 31 H 1.09003 * 109.47315 * 299.99523 * 4 3 2 32 32 H 1.09005 * 109.46999 * 59.99936 * 5 4 3 33 33 H 1.08994 * 109.47114 * 299.99990 * 5 4 3 34 34 H 1.09005 * 109.46796 * 60.00068 * 6 5 4 35 35 H 1.09008 * 109.47078 * 300.00372 * 6 5 4 36 36 H 1.08993 * 110.99234 * 88.81733 * 8 7 6 37 37 H 1.09005 * 110.34668 * 326.26220 * 8 7 6 38 38 H 1.09000 * 109.47435 * 330.02281 * 14 13 11 39 39 H 1.09002 * 109.46784 * 210.01917 * 14 13 11 40 40 H 1.09001 * 109.47671 * 59.99927 * 15 14 13 41 41 H 1.08998 * 109.47454 * 299.99925 * 15 14 13 42 42 H 0.97004 * 120.00247 * 180.02562 * 19 18 16 43 43 H 1.09008 * 110.13196 * 103.36798 * 24 13 11 44 44 H 1.08996 * 110.13785 * 225.06929 * 24 13 11 45 45 H 1.09000 * 109.80219 * 21.76724 * 27 7 6 46 46 H 1.08996 * 109.85344 * 260.91351 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0578 -0.9797 5 6 4.6485 -1.0576 -0.9793 6 6 5.1590 -2.1164 -1.9585 7 7 6.6280 -2.1166 -1.9576 8 6 7.1610 -0.8768 -2.5989 9 6 8.5356 -1.2908 -3.1656 10 9 8.9187 -0.5318 -4.2766 11 6 9.5465 -1.2413 -2.0401 12 8 9.7871 -0.2583 -1.3718 13 7 10.1393 -2.4344 -1.8831 14 6 11.1312 -2.7327 -0.8471 15 6 10.4204 -3.2443 0.4074 16 6 11.4409 -3.5518 1.4729 17 1 12.4914 -3.3981 1.2748 18 6 11.0331 -4.0244 2.7022 19 7 9.7534 -4.2064 2.9452 20 14 12.2979 -4.4048 4.0232 21 1 13.6586 -4.1167 3.5031 22 1 12.0352 -3.5623 5.2174 23 1 12.2053 -5.8386 4.3988 24 6 9.6737 -3.4001 -2.8829 25 6 8.3875 -2.8026 -3.4825 26 9 8.2812 -3.0519 -4.8550 27 6 7.1563 -3.2729 -2.7017 28 1 2.9714 -0.2265 1.0022 29 1 2.9709 0.9824 -0.3042 30 1 2.7551 -0.8307 -1.9819 31 1 2.7557 -2.0396 -0.6755 32 1 5.0115 -1.2850 0.0231 33 1 5.0117 -0.0759 -1.2832 34 1 4.7960 -1.8894 -2.9609 35 1 4.7957 -3.0981 -1.6541 36 1 7.2802 -0.0786 -1.8665 37 1 6.5025 -0.5542 -3.4055 38 1 11.6879 -1.8273 -0.6056 39 1 11.8190 -3.4958 -1.2117 40 1 9.8637 -4.1498 0.1660 41 1 9.7326 -2.4814 0.7720 42 1 9.4664 -4.5385 3.8102 43 1 10.4278 -3.5295 -3.6593 44 1 9.4557 -4.3565 -2.4077 45 1 6.3999 -3.6438 -3.3934 46 1 7.4396 -4.0627 -2.0061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274043073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:34 Heat of formation + Delta-G solvation = -96.543227 kcal Electronic energy + Delta-G solvation = -30467.239844 eV Core-core repulsion = 26027.744635 eV Total energy + Delta-G solvation = -4439.495208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.58196 -47.52780 -40.60948 -38.26974 -37.26254 -36.22149 -35.07363 -33.54999 -32.06787 -30.23666 -29.85777 -28.46187 -26.05324 -25.46774 -24.11514 -22.40140 -21.56526 -21.35005 -20.83971 -19.59200 -17.85608 -17.43981 -16.85139 -16.65161 -16.32067 -16.17286 -15.77894 -15.55842 -15.21073 -14.96650 -14.68723 -14.56075 -14.24535 -14.15826 -14.02855 -13.91539 -13.72462 -13.53910 -13.23876 -12.98517 -12.83967 -12.58399 -12.48710 -12.41822 -12.16256 -12.05768 -11.80858 -11.53521 -11.45401 -11.37087 -11.12226 -11.01737 -10.88242 -10.77806 -10.70781 -10.09152 -9.97013 -9.56204 -9.21698 -8.73636 -8.42440 -8.31589 -6.07323 -4.11000 2.46550 2.51633 2.56562 2.95136 3.27498 3.29386 3.35750 3.38602 3.39503 3.61014 3.68283 3.71002 4.08926 4.26666 4.40601 4.48354 4.52629 4.58542 4.85938 4.93709 4.96071 5.05115 5.16797 5.26849 5.28712 5.29353 5.33638 5.39287 5.43894 5.49947 5.56847 5.58504 5.66706 5.83657 5.89958 6.06222 6.31781 6.43496 6.61344 6.62983 6.68998 7.19501 7.28332 7.57909 7.71897 7.90764 8.19191 8.32208 8.95149 9.53483 11.03612 Molecular weight = 341.17amu Principal moments of inertia in cm(-1) A = 0.007663 B = 0.003465 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.861516 B = 8077.846210 C =10750.476031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.209 3.791 3 C -0.028 4.028 4 C -0.114 4.114 5 C -0.119 4.119 6 C 0.051 3.949 7 N -0.507 5.507 8 C 0.034 3.966 9 C 0.060 3.940 10 F -0.162 7.162 11 C 0.520 3.480 12 O -0.501 6.501 13 N -0.591 5.591 14 C 0.127 3.873 15 C 0.014 3.986 16 C -0.524 4.524 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.091 3.909 25 C 0.079 3.921 26 F -0.173 7.173 27 C 0.032 3.968 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.019 0.981 41 H 0.026 0.974 42 H 0.261 0.739 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.073 0.927 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.082 2.910 -13.582 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.109 4.109 3 C -0.068 4.068 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.077 4.077 7 N -0.231 5.231 8 C -0.094 4.094 9 C 0.037 3.963 10 F -0.142 7.142 11 C 0.302 3.698 12 O -0.375 6.375 13 N -0.324 5.324 14 C 0.008 3.992 15 C -0.024 4.024 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.033 4.033 25 C 0.059 3.941 26 F -0.153 7.153 27 C -0.096 4.096 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.037 0.963 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.123 0.877 45 H 0.091 0.909 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.537 3.332 -12.544 16.718 hybrid contribution 0.798 -0.271 -0.383 0.926 sum -9.739 3.062 -12.927 16.472 Atomic orbital electron populations 1.81240 1.13257 1.08833 1.08909 1.29345 0.95450 0.93070 0.93043 1.19366 0.81194 1.02716 1.03557 1.21495 0.96083 0.98728 0.99006 1.21575 0.93332 0.99232 1.01533 1.22356 0.85945 1.00910 0.98491 1.64297 1.08764 1.00277 1.49787 1.23690 0.91268 0.95051 0.99363 1.22624 0.98164 0.90428 0.85118 1.92920 1.92372 1.76573 1.52350 1.20004 0.81524 0.84036 0.84211 1.90746 1.63986 1.34148 1.48625 1.48250 1.42104 1.10396 1.31652 1.22009 0.88919 1.01030 0.87207 1.19404 0.96264 0.96653 0.90070 1.21087 0.93179 1.44198 0.97810 0.92439 1.24970 0.95240 0.95470 0.98407 1.69978 1.14088 1.45569 1.23111 0.86522 0.81686 0.77895 0.81814 1.19696 1.20933 1.21015 1.22446 0.93537 0.94768 0.92598 1.22463 0.98780 0.94685 0.78197 1.92920 1.97127 1.94870 1.30428 1.23182 0.93953 0.95598 0.96848 0.86863 0.87204 0.91217 0.90765 0.89579 0.91214 0.94123 0.89724 0.86680 0.91102 0.90447 0.90988 0.96300 0.95609 0.92978 0.89449 0.87653 0.90896 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.28 18.54 42.15 0.78 -4.50 16 2 C 0.21 1.74 15.43 -20.76 -0.32 1.42 16 3 C -0.03 -0.13 5.70 -29.52 -0.17 -0.30 16 4 C -0.11 -0.57 5.17 -26.73 -0.14 -0.71 16 5 C -0.12 -0.81 5.27 -26.73 -0.14 -0.95 16 6 C 0.05 0.41 4.64 -3.83 -0.02 0.39 16 7 N -0.51 -5.73 5.16 -231.11 -1.19 -6.92 16 8 C 0.03 0.41 5.14 -1.72 -0.01 0.40 16 9 C 0.06 0.85 1.84 -89.60 -0.16 0.69 16 10 F -0.16 -2.43 16.89 2.25 0.04 -2.39 16 11 C 0.52 9.28 7.03 -10.94 -0.08 9.20 16 12 O -0.50 -10.70 17.21 5.56 0.10 -10.60 16 13 N -0.59 -9.99 2.92 -172.91 -0.50 -10.49 16 14 C 0.13 2.47 5.86 -4.04 -0.02 2.45 16 15 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 16 C -0.52 -14.02 9.11 -34.44 -0.31 -14.33 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 20 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 C 0.09 1.16 6.67 -3.48 -0.02 1.14 16 25 C 0.08 0.96 1.85 -88.86 -0.16 0.79 16 26 F -0.17 -2.11 16.80 2.25 0.04 -2.08 16 27 C 0.03 0.34 6.27 -3.50 -0.02 0.32 16 28 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.46 7.46 -51.93 -0.39 0.07 16 34 H 0.04 0.28 7.84 -51.93 -0.41 -0.13 16 35 H 0.08 0.63 8.08 -51.92 -0.42 0.21 16 36 H 0.12 1.46 7.62 -51.93 -0.40 1.07 16 37 H 0.07 0.69 7.71 -51.93 -0.40 0.29 16 38 H 0.08 1.60 7.89 -51.93 -0.41 1.19 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 44 H 0.11 1.22 7.45 -51.93 -0.39 0.83 16 45 H 0.07 0.62 7.64 -51.93 -0.40 0.23 16 46 H 0.11 1.25 7.30 -51.93 -0.38 0.87 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -33.83 390.71 -7.90 -41.73 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -6.93 Total: -4.00 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.83 Total: 2.28 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.18 Total: -46.66 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.10 Total: -10.60 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.08 Total: -4.46 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.83 -7.90 -41.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.813 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds