Wall clock time and date at job start Sat Apr 11 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46503 * 120.00333 * 2 1 4 4 C 1.53005 * 109.46816 * 270.00140 * 3 2 1 5 5 C 1.53001 * 109.47109 * 299.99234 * 4 3 2 6 6 C 1.52997 * 109.47177 * 59.99368 * 4 3 2 7 7 C 1.52999 * 109.46581 * 179.97438 * 4 3 2 8 8 N 1.46508 * 109.46709 * 179.97438 * 7 4 3 9 9 C 1.36937 * 119.99778 * 179.97438 * 8 7 4 10 10 H 1.08005 * 120.00296 * 0.02562 * 9 8 7 11 11 C 1.38810 * 119.99995 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99860 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00175 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46935 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47097 * 120.00476 * 13 11 9 16 16 H 1.48496 * 109.47034 * 240.00366 * 13 11 9 17 17 C 1.34777 * 120.00203 * 179.97438 * 2 1 3 18 18 O 1.21554 * 120.00403 * 174.62600 * 17 2 1 19 19 C 1.47844 * 119.99729 * 354.90409 * 17 2 1 20 20 C 1.40015 * 120.55840 * 312.66423 * 19 17 2 21 21 C 1.38362 * 118.28592 * 179.97438 * 20 19 17 22 22 C 1.38345 * 119.30529 * 0.02562 * 21 20 19 23 23 N 1.31928 * 121.08299 * 359.97438 * 22 21 20 24 24 C 1.31703 * 121.87422 * 359.73038 * 23 22 21 25 25 C 1.50694 * 119.71617 * 180.26667 * 24 23 22 26 26 F 1.39899 * 109.47474 * 120.26706 * 25 24 23 27 27 F 1.39896 * 109.47351 * 240.26811 * 25 24 23 28 28 H 1.08997 * 109.47185 * 305.77185 * 1 2 3 29 29 H 1.09003 * 109.47240 * 65.78114 * 1 2 3 30 30 H 1.08999 * 109.47252 * 185.77359 * 1 2 3 31 31 H 1.09003 * 109.46675 * 29.99871 * 3 2 1 32 32 H 1.08993 * 109.47244 * 149.99788 * 3 2 1 33 33 H 1.08998 * 109.46630 * 60.00257 * 5 4 3 34 34 H 1.08998 * 109.47162 * 180.02562 * 5 4 3 35 35 H 1.08993 * 109.47407 * 300.00630 * 5 4 3 36 36 H 1.09003 * 109.46770 * 60.00325 * 6 4 3 37 37 H 1.09004 * 109.47173 * 179.97438 * 6 4 3 38 38 H 1.08989 * 109.47357 * 300.00098 * 6 4 3 39 39 H 1.08993 * 109.47688 * 299.99685 * 7 4 3 40 40 H 1.08998 * 109.47402 * 60.00143 * 7 4 3 41 41 H 0.96994 * 120.00331 * 0.02562 * 8 7 4 42 42 H 0.97003 * 120.00237 * 179.97438 * 12 11 9 43 43 H 1.08003 * 120.85863 * 359.95604 * 20 19 17 44 44 H 1.08001 * 120.34357 * 180.02562 * 21 20 19 45 45 H 1.08005 * 119.46125 * 179.97438 * 22 21 20 46 46 H 1.09002 * 109.47303 * 0.26609 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.2794 0.6440 -2.1638 6 6 1.1156 1.8932 -2.1638 7 6 3.2170 3.0356 -1.4425 8 7 3.4617 3.4582 -2.8238 9 6 4.1341 4.6246 -3.0740 10 1 4.4844 5.2328 -2.2531 11 6 4.3664 5.0247 -4.3827 12 7 3.9399 4.2833 -5.3832 13 14 5.2843 6.6155 -4.7241 14 1 5.6546 7.2590 -3.4381 15 1 6.5145 6.3201 -5.5017 16 1 4.4138 7.5316 -5.5040 17 6 2.1389 -1.1672 0.0005 18 8 3.3504 -1.1696 -0.0981 19 6 1.4040 -2.4450 0.1148 20 6 0.4122 -2.6110 1.0890 21 6 -0.2464 -3.8262 1.1537 22 6 0.0932 -4.8287 0.2629 23 7 1.0324 -4.6437 -0.6450 24 6 1.6833 -3.5036 -0.7500 25 6 2.7432 -3.3434 -1.8091 26 9 2.3957 -2.2894 -2.6610 27 9 3.9720 -3.0656 -1.2010 28 1 -0.3633 0.6007 0.8338 29 1 -0.3634 0.4216 -0.9372 30 1 -0.3634 -1.0224 0.1034 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 2.7344 -0.2999 -2.1637 34 1 3.4615 0.9589 -3.1913 35 1 4.2318 0.5137 -1.6499 36 1 0.5266 2.6529 -1.6500 37 1 1.2973 2.2082 -3.1914 38 1 0.5707 0.9493 -2.1638 39 1 2.6277 3.7951 -0.9289 40 1 4.1694 2.9057 -0.9286 41 1 3.1468 2.9122 -3.5611 42 1 4.1019 4.5631 -6.2977 43 1 0.1676 -1.8114 1.7726 44 1 -1.0174 -3.9903 1.8920 45 1 -0.4189 -5.7784 0.3114 46 1 2.8232 -4.2651 -2.3855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275691480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:37 Heat of formation + Delta-G solvation = -65.496503 kcal Electronic energy + Delta-G solvation = -31632.016764 eV Core-core repulsion = 27193.867842 eV Total energy + Delta-G solvation = -4438.148921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.166 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.96844 -46.91957 -41.22005 -39.67703 -37.22746 -35.27437 -33.58759 -32.95158 -32.33951 -30.10904 -28.00962 -27.45226 -26.47383 -26.06820 -25.40322 -24.28253 -22.97271 -22.29266 -20.07034 -18.36116 -18.08938 -17.92116 -17.47748 -17.20147 -17.14394 -16.53323 -15.95448 -15.70468 -15.49022 -14.69582 -14.59173 -14.28105 -13.98874 -13.82059 -13.73038 -13.48221 -13.36041 -13.25037 -13.14773 -13.05719 -12.70020 -12.53999 -12.48053 -12.11969 -12.05927 -11.55839 -11.10935 -10.99906 -10.87027 -10.76375 -10.64404 -10.40655 -10.33610 -10.15372 -10.09619 -9.95160 -9.74510 -9.61130 -9.57649 -8.78466 -8.55914 -6.79960 -5.67461 -2.94670 0.15924 0.49946 2.49065 2.79675 3.03839 3.14686 3.48884 3.54285 3.56671 3.89947 4.05510 4.10917 4.21211 4.42292 4.66618 4.67457 4.78583 4.84718 4.87859 4.94397 5.12597 5.21664 5.31497 5.38991 5.41426 5.41548 5.56103 5.64891 5.77993 5.87295 5.99668 6.02807 6.20160 6.29569 6.37495 6.52586 6.65466 6.75639 6.85871 6.89084 7.04954 7.15453 7.18414 7.26740 7.78718 8.03851 8.52029 9.63043 10.23278 10.58106 11.55747 Molecular weight = 341.17amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.002941 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.478717 B = 9518.321292 C =10122.916977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.598 5.598 3 C 0.130 3.870 4 C -0.085 4.085 5 C -0.131 4.131 6 C -0.136 4.136 7 C 0.166 3.834 8 N -0.727 5.727 9 C -0.234 4.234 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.905 3.095 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.293 1.293 17 C 0.548 3.452 18 O -0.492 6.492 19 C -0.135 4.135 20 C -0.049 4.049 21 C -0.158 4.158 22 C 0.115 3.885 23 N -0.460 5.460 24 C 0.095 3.905 25 C 0.320 3.680 26 F -0.184 7.184 27 F -0.169 7.169 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.019 0.981 41 H 0.385 0.615 42 H 0.253 0.747 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.169 0.831 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.828 -20.146 15.620 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.331 5.331 3 C 0.008 3.992 4 C -0.087 4.087 5 C -0.189 4.189 6 C -0.194 4.194 7 C 0.038 3.962 8 N -0.372 5.372 9 C -0.365 4.365 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.220 1.220 16 H -0.220 1.220 17 C 0.333 3.667 18 O -0.365 6.365 19 C -0.140 4.140 20 C -0.075 4.075 21 C -0.178 4.178 22 C -0.042 4.042 23 N -0.168 5.168 24 C -0.044 4.044 25 C 0.265 3.735 26 F -0.165 7.165 27 F -0.149 7.149 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.033 0.967 40 H 0.036 0.964 41 H 0.220 0.780 42 H 0.063 0.937 43 H 0.167 0.833 44 H 0.167 0.833 45 H 0.186 0.814 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.835 -20.615 15.016 28.551 hybrid contribution 0.003 1.523 0.121 1.527 sum -12.832 -19.092 15.136 27.537 Atomic orbital electron populations 1.22341 0.79946 1.03002 1.03376 1.47603 1.06769 1.05886 1.72806 1.21616 0.97104 0.82859 0.97611 1.21117 0.96489 0.97119 0.93954 1.21877 0.99458 0.97060 1.00472 1.21929 0.95806 0.99762 1.01864 1.20577 0.95629 0.91172 0.88853 1.42398 1.68110 1.25713 1.01021 1.19284 1.27466 0.98058 0.91719 0.91273 1.24719 1.01904 0.98965 0.95609 1.69675 1.51785 1.38780 0.98054 0.86128 0.79211 0.83276 0.77674 1.20648 1.21965 1.22015 1.17992 0.87471 0.83037 0.78236 1.90953 1.12596 1.86301 1.46699 1.20923 0.98381 0.96367 0.98373 1.21850 0.91878 0.97971 0.95846 1.22261 1.01215 0.93668 1.00657 1.22972 0.92298 0.99410 0.89536 1.67320 1.06662 1.21484 1.21352 1.21779 0.96760 0.89599 0.96295 1.20052 0.78858 0.89583 0.85040 1.93043 1.92169 1.60366 1.70928 1.93158 1.43013 1.94748 1.84028 0.91466 0.90679 0.90685 0.90393 0.89701 0.92754 0.92503 0.92706 0.93363 0.91471 0.93488 0.96650 0.96350 0.77956 0.93683 0.83263 0.83331 0.81371 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 9.26 59.84 0.55 1.03 16 2 N -0.60 -7.27 2.40 -182.70 -0.44 -7.71 16 3 C 0.13 1.82 4.62 -4.04 -0.02 1.80 16 4 C -0.09 -1.49 0.60 -154.51 -0.09 -1.58 16 5 C -0.13 -2.58 6.89 37.16 0.26 -2.32 16 6 C -0.14 -2.25 7.48 37.16 0.28 -1.97 16 7 C 0.17 3.51 5.15 -4.04 -0.02 3.49 16 8 N -0.73 -19.10 5.00 -59.91 -0.30 -19.40 16 9 C -0.23 -6.77 9.99 -15.06 -0.15 -6.92 16 10 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -29.09 13.06 55.49 0.72 -28.36 16 13 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 16 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 17 C 0.55 7.59 4.83 -12.33 -0.06 7.53 16 18 O -0.49 -8.61 11.22 5.32 0.06 -8.55 16 19 C -0.14 -1.51 4.97 -104.82 -0.52 -2.03 16 20 C -0.05 -0.36 7.48 -38.87 -0.29 -0.65 16 21 C -0.16 -0.81 10.10 -39.50 -0.40 -1.21 16 22 C 0.12 0.74 11.17 -17.47 -0.20 0.54 16 23 N -0.46 -4.53 10.24 -9.14 -0.09 -4.63 16 24 C 0.10 1.12 6.31 -82.17 -0.52 0.60 16 25 C 0.32 4.12 5.05 36.00 0.18 4.30 16 26 F -0.18 -2.79 14.20 2.25 0.03 -2.76 16 27 F -0.17 -2.66 14.43 2.25 0.03 -2.63 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.70 5.40 -51.93 -0.28 0.41 16 30 H 0.07 0.53 4.30 -51.93 -0.22 0.30 16 31 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.08 1.29 7.50 -51.93 -0.39 0.90 16 33 H 0.05 1.00 3.58 -51.93 -0.19 0.82 16 34 H 0.06 1.26 6.86 -51.93 -0.36 0.91 16 35 H 0.05 1.15 7.63 -51.93 -0.40 0.75 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.33 6.86 -51.93 -0.36 0.97 16 38 H 0.05 0.68 5.32 -51.94 -0.28 0.40 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.39 10.65 5.36 -40.82 -0.22 10.43 16 42 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.15 0.75 7.21 -52.48 -0.38 0.37 16 44 H 0.15 0.25 8.06 -52.49 -0.42 -0.18 16 45 H 0.17 0.50 8.06 -52.48 -0.42 0.07 16 46 H 0.13 1.22 8.11 -51.93 -0.42 0.80 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -36.09 361.87 -6.63 -42.72 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.98 Total: 5.75 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.09 Total: 2.02 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.11 Total: -60.10 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.06 Total: -8.55 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.06 Total: -5.39 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.09 -6.63 -42.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275691480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.773 kcal (2) G-P(sol) polarization free energy of solvation -36.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds