Wall clock time and date at job start Sat Apr 11 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30832 * 125.96108 * 2 1 4 4 C 1.33244 * 109.83031 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.52726 * 179.73720 * 4 3 2 6 6 H 1.08997 * 109.47450 * 15.00230 * 5 4 3 7 7 C 1.52995 * 109.47020 * 254.99739 * 5 4 3 8 8 N 1.46909 * 109.47171 * 134.99738 * 5 4 3 9 9 C 1.46902 * 110.99950 * 303.95599 * 8 5 4 10 10 C 1.46898 * 110.99933 * 179.97438 * 8 5 4 11 11 H 1.08998 * 109.47414 * 310.00482 * 10 8 5 12 12 C 1.53007 * 109.46919 * 70.00323 * 10 8 5 13 13 C 1.52998 * 109.47241 * 189.99840 * 10 8 5 14 14 N 1.46505 * 109.46550 * 55.00279 * 13 10 8 15 15 C 1.34783 * 119.99606 * 180.02562 * 14 13 10 16 16 O 1.21280 * 120.00229 * 359.97438 * 15 14 13 17 17 C 1.50692 * 119.99715 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47090 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00226 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99855 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00119 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00130 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99949 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46916 * 89.99812 * 23 21 19 25 25 H 1.48497 * 109.47252 * 209.99891 * 23 21 19 26 26 H 1.48493 * 109.47171 * 329.99701 * 23 21 19 27 27 N 1.30715 * 108.94545 * 359.97438 * 4 3 2 28 28 N 1.34430 * 125.96160 * 179.97438 * 2 1 3 29 29 H 0.96996 * 126.82506 * 0.02562 * 28 2 1 30 30 H 1.08991 * 109.47005 * 89.99821 * 1 2 3 31 31 H 1.09000 * 109.47083 * 209.99974 * 1 2 3 32 32 H 1.09000 * 109.47150 * 329.99689 * 1 2 3 33 33 H 1.08997 * 109.46973 * 60.00406 * 7 5 4 34 34 H 1.09003 * 109.47138 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47066 * 299.99839 * 7 5 4 36 36 H 1.08997 * 109.47044 * 59.99309 * 9 8 5 37 37 H 1.08995 * 109.46953 * 180.02562 * 9 8 5 38 38 H 1.09000 * 109.46536 * 299.99636 * 9 8 5 39 39 H 1.09000 * 109.47177 * 59.99397 * 12 10 8 40 40 H 1.08995 * 109.47063 * 179.97438 * 12 10 8 41 41 H 1.09000 * 109.47255 * 299.99848 * 12 10 8 42 42 H 1.08993 * 109.47265 * 175.00474 * 13 10 8 43 43 H 1.08998 * 109.47423 * 295.00583 * 13 10 8 44 44 H 0.96993 * 120.00461 * 359.97438 * 14 13 10 45 45 H 1.09001 * 109.47623 * 299.99691 * 17 15 14 46 46 H 1.09001 * 109.47287 * 60.00232 * 17 15 14 47 47 H 0.96994 * 120.00093 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7372 1.6236 -0.0049 6 1 4.4067 2.6288 0.2567 7 6 5.3676 1.6406 -1.3988 8 7 5.7297 1.1639 0.9758 9 6 5.1328 1.0450 2.3128 10 6 6.8990 2.0529 0.9978 11 1 7.2565 2.2083 -0.0200 12 6 6.5051 3.3983 1.6110 13 6 8.0085 1.4155 1.8366 14 7 8.3026 0.0763 1.3204 15 6 9.2526 -0.6784 1.9074 16 8 9.8642 -0.2488 2.8625 17 6 9.5555 -2.0557 1.3762 18 16 10.8680 -2.8099 2.3684 19 6 11.0155 -4.3636 1.5506 20 1 10.3856 -4.5897 0.7030 21 6 11.9407 -5.2975 1.9963 22 7 12.7082 -5.0222 3.0297 23 14 12.0965 -6.9449 1.1297 24 1 13.1002 -6.8382 0.0405 25 1 12.5314 -7.9777 2.1041 26 1 10.7819 -7.3285 0.5556 27 7 3.6195 -0.6168 0.0015 28 7 2.2964 -1.0881 0.0005 29 1 2.0094 -2.0146 0.0006 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 4.6312 1.9818 -2.1264 34 1 6.2228 2.3165 -1.4027 35 1 5.6982 0.6354 -1.6604 36 1 4.3131 0.3273 2.2822 37 1 5.8893 0.7035 3.0193 38 1 4.7533 2.0167 2.6289 39 1 6.1475 3.2429 2.6289 40 1 7.3728 4.0578 1.6278 41 1 5.7146 3.8524 1.0135 42 1 8.9058 2.0317 1.7805 43 1 7.6829 1.3416 2.8741 44 1 7.8132 -0.2675 0.5568 45 1 8.6581 -2.6720 1.4315 46 1 9.8819 -1.9814 0.3389 47 1 13.3549 -5.6746 3.3409 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275772247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:42 Heat of formation + Delta-G solvation = 55.355021 kcal Electronic energy + Delta-G solvation = -27395.911949 eV Core-core repulsion = 23549.136681 eV Total energy + Delta-G solvation = -3846.775268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.51621 -39.66000 -38.43790 -34.84004 -33.29207 -32.70131 -32.36380 -31.62420 -30.56767 -29.21758 -28.31082 -26.12802 -25.56201 -25.27408 -24.47514 -21.65718 -20.72562 -20.06624 -19.33735 -18.28114 -17.71441 -16.91005 -16.26630 -16.03603 -15.96795 -15.21390 -15.04579 -14.74722 -14.65741 -14.40920 -14.14388 -13.83598 -13.53668 -13.40993 -13.20214 -13.06865 -12.75083 -12.66731 -12.52482 -12.38128 -12.24318 -12.14094 -11.96299 -11.83023 -11.54895 -11.30813 -11.01411 -10.95775 -10.85014 -10.70104 -10.39216 -10.33899 -9.74592 -9.73888 -9.24402 -9.00645 -8.66906 -8.54820 -8.14182 -6.41381 -6.15307 -3.84560 1.27925 2.31038 2.48973 3.14983 3.25993 3.26828 3.31354 3.33099 3.40768 3.72791 3.93526 4.19494 4.27071 4.40500 4.56002 4.74231 4.79594 4.86169 4.88441 4.99229 5.08014 5.14270 5.19588 5.24385 5.30978 5.32053 5.40023 5.41978 5.49176 5.53778 5.65477 5.78538 5.81995 5.85909 5.91399 5.97143 6.00463 6.05017 6.09690 6.28829 6.64437 6.71280 6.77137 6.90431 7.66233 7.79702 7.98938 8.42091 8.81923 9.29995 10.92171 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.002434 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.156283 B =11500.852034 C =13141.803875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.277 3.723 3 N -0.541 5.541 4 C 0.233 3.767 5 C 0.175 3.825 6 H 0.071 0.929 7 C -0.145 4.145 8 N -0.520 5.520 9 C 0.022 3.978 10 C 0.064 3.936 11 H 0.098 0.902 12 C -0.186 4.186 13 C 0.133 3.867 14 N -0.725 5.725 15 C 0.531 3.469 16 O -0.526 6.526 17 C -0.151 4.151 18 S -0.063 6.063 19 C -0.533 4.533 20 H 0.072 0.928 21 C 0.072 3.928 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.272 1.272 27 N -0.278 5.278 28 N -0.485 5.485 29 H 0.440 0.560 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.031 0.969 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.405 0.595 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.194 15.452 -8.796 31.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.001 4.001 3 N -0.271 5.271 4 C -0.050 4.050 5 C 0.065 3.935 6 H 0.089 0.911 7 C -0.203 4.203 8 N -0.245 5.245 9 C -0.125 4.125 10 C -0.044 4.044 11 H 0.116 0.884 12 C -0.245 4.245 13 C 0.008 3.992 14 N -0.379 5.379 15 C 0.317 3.683 16 O -0.402 6.402 17 C -0.301 4.301 18 S 0.164 5.836 19 C -0.681 4.681 20 H 0.090 0.910 21 C -0.137 4.137 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.106 5.106 28 N -0.204 5.204 29 H 0.286 0.714 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.240 0.760 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.296 15.618 -7.216 29.771 hybrid contribution -1.613 -1.663 -1.708 2.878 sum -25.909 13.956 -8.924 30.752 Atomic orbital electron populations 1.20383 0.83740 1.04999 1.04521 1.24358 0.96576 0.82972 0.96206 1.70323 1.01343 1.29668 1.25752 1.23912 0.92509 0.90250 0.98357 1.19805 0.86078 0.93305 0.94351 0.91099 1.21913 1.00861 1.03745 0.93814 1.62120 1.06708 1.48976 1.06720 1.22421 1.00072 1.00106 0.89949 1.22112 0.90662 0.90563 1.01058 0.88448 1.22400 1.02527 0.97676 1.01935 1.21263 0.96312 0.84165 0.97437 1.45813 1.39975 1.16352 1.35791 1.20260 0.78725 0.86462 0.82887 1.90685 1.49688 1.72886 1.26903 1.23499 1.05937 0.95702 1.04995 1.85351 1.41740 1.15514 1.41002 1.22880 1.25087 1.01436 1.18691 0.90987 1.24988 0.94816 0.98751 0.95104 1.70023 1.21278 1.35456 1.23648 0.86179 0.78506 0.81814 0.79066 1.20308 1.20817 1.19730 1.78240 0.95460 1.12165 1.24729 1.48172 1.04692 1.10113 1.57380 0.71415 0.89033 0.89849 0.88434 0.91840 0.91041 0.90887 0.91964 0.90471 0.95026 0.91686 0.91249 0.92009 0.91167 0.91806 0.75966 0.89322 0.89403 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.28 2.17 8.24 -155.69 -1.28 0.89 16 3 N -0.54 -5.73 11.19 -8.16 -0.09 -5.82 16 4 C 0.23 2.57 5.39 -156.85 -0.85 1.72 16 5 C 0.18 1.64 2.41 -68.86 -0.17 1.47 16 6 H 0.07 0.64 6.62 -51.93 -0.34 0.29 16 7 C -0.14 -1.17 8.97 37.16 0.33 -0.84 16 8 N -0.52 -5.13 4.00 -228.30 -0.91 -6.04 16 9 C 0.02 0.24 8.37 60.07 0.50 0.74 16 10 C 0.06 0.57 2.28 -67.71 -0.15 0.42 16 11 H 0.10 0.78 5.83 -51.93 -0.30 0.48 16 12 C -0.19 -1.37 8.44 37.16 0.31 -1.06 16 13 C 0.13 1.62 4.85 -4.04 -0.02 1.60 16 14 N -0.72 -10.55 5.39 -60.30 -0.32 -10.88 16 15 C 0.53 10.48 7.85 -10.99 -0.09 10.40 16 16 O -0.53 -12.45 15.86 5.56 0.09 -12.36 16 17 C -0.15 -3.22 6.16 36.00 0.22 -3.00 16 18 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 19 C -0.53 -15.60 9.50 30.94 0.29 -15.30 16 20 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.72 13.22 55.49 0.73 -25.99 16 23 Si 0.92 21.89 29.55 -169.99 -5.02 16.86 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 N -0.28 -3.23 12.47 32.42 0.40 -2.83 16 28 N -0.49 -3.99 7.45 32.62 0.24 -3.75 16 29 H 0.44 2.20 8.96 -182.34 -1.63 0.56 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 32 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.47 6.20 -51.93 -0.32 0.15 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.75 6.74 -51.93 -0.35 0.40 16 37 H 0.08 0.90 6.40 -51.93 -0.33 0.56 16 38 H 0.03 0.30 6.46 -51.93 -0.34 -0.04 16 39 H 0.06 0.51 6.42 -51.93 -0.33 0.18 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.41 6.69 -51.93 -0.35 0.07 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.85 6.71 -51.93 -0.35 0.50 16 44 H 0.41 5.26 8.14 -40.82 -0.33 4.93 16 45 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 46 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 47 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 394.03 15.07 5.94 5.94 Total: -1.00 -37.98 394.03 -10.10 -48.08 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.33 Total: 1.57 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -0.61 Total: -0.81 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.05 Total: -55.31 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.98 -10.10 -48.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275772247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.433 kcal (2) G-P(sol) polarization free energy of solvation -37.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds