Wall clock time and date at job start Sat Apr 11 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.46980 * 179.97438 * 14 13 12 16 16 H 1.09006 * 109.47245 * 295.00061 * 15 14 13 17 17 N 1.46494 * 109.47297 * 54.99819 * 15 14 13 18 18 C 1.34783 * 120.00414 * 204.99727 * 17 15 14 19 19 O 1.21284 * 119.99428 * 0.02562 * 18 17 15 20 20 C 1.50693 * 120.00276 * 180.02562 * 18 17 15 21 21 H 1.08991 * 109.52756 * 55.13330 * 20 18 17 22 22 C 1.53151 * 109.52279 * 295.00236 * 20 18 17 23 23 O 1.43078 * 109.14642 * 184.78445 * 22 20 18 24 24 C 1.43080 * 113.59339 * 57.95990 * 23 22 20 25 25 C 1.53151 * 109.14745 * 302.03953 * 24 23 22 26 26 O 1.43071 * 109.14699 * 55.31392 * 25 24 23 27 27 C 1.53000 * 109.47163 * 175.00359 * 15 14 13 28 28 C 1.53006 * 117.49661 * 248.61994 * 27 15 14 29 29 C 1.52997 * 60.00031 * 252.51025 * 28 27 15 30 30 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.00894 * 110.99640 * 303.95307 * 13 12 10 35 35 H 1.08997 * 109.46919 * 300.00265 * 14 13 12 36 36 H 1.08999 * 109.46846 * 60.00151 * 14 13 12 37 37 H 0.97004 * 120.00172 * 25.00338 * 17 15 14 38 38 H 1.09000 * 109.52087 * 304.68388 * 22 20 18 39 39 H 1.08997 * 109.52557 * 64.88316 * 22 20 18 40 40 H 1.09000 * 109.52801 * 61.94075 * 24 23 22 41 41 H 1.08999 * 109.52126 * 182.08172 * 24 23 22 42 42 H 1.08997 * 109.52557 * 175.21809 * 25 24 23 43 43 H 1.08997 * 109.52297 * 295.35167 * 25 24 23 44 44 H 1.08993 * 115.55243 * 34.32614 * 27 15 14 45 45 H 1.08999 * 117.49527 * 359.97438 * 28 27 15 46 46 H 1.08995 * 117.49734 * 145.01591 * 28 27 15 47 47 H 1.09000 * 117.49850 * 252.51421 * 29 28 27 48 48 H 1.08998 * 117.50345 * 107.48861 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0503 -3.7556 0.0246 14 6 7.5188 -3.7948 0.0308 15 6 7.9901 -5.2503 0.0369 16 1 7.6849 -5.7272 0.9684 17 7 7.3915 -5.9622 -1.0949 18 6 7.2290 -7.2990 -1.0406 19 8 7.5780 -7.9126 -0.0543 20 6 6.6138 -8.0313 -2.2051 21 1 7.1734 -7.8072 -3.1131 22 6 5.1584 -7.5869 -2.3780 23 8 4.5495 -8.3661 -3.4120 24 6 4.5836 -9.7746 -3.1631 25 6 6.0389 -10.2191 -2.9901 26 8 6.6479 -9.4399 -1.9562 27 6 9.5148 -5.2932 -0.0823 28 6 10.1066 -5.8448 -1.3810 29 6 10.1841 -6.6690 -0.0944 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3633 0.0059 32 1 5.9281 -1.8591 -0.8704 33 1 5.9199 -1.8544 0.9095 34 1 5.6712 -4.2701 0.8054 35 1 7.8993 -3.2929 -0.8588 36 1 7.8920 -3.2887 0.9212 37 1 7.1121 -5.4714 -1.8837 38 1 4.6184 -7.7365 -1.4431 39 1 5.1297 -6.5322 -2.6517 40 1 4.0242 -9.9977 -2.2545 41 1 4.1376 -10.3042 -4.0049 42 1 6.0677 -11.2737 -2.7164 43 1 6.5787 -10.0706 -3.9254 44 1 10.0478 -4.4786 0.4078 45 1 9.4096 -6.1775 -2.1502 46 1 11.0290 -5.3929 -1.7455 47 1 11.1575 -6.7593 0.3876 48 1 9.5381 -7.5436 -0.0172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276544748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:50 Heat of formation + Delta-G solvation = -115.771459 kcal Electronic energy + Delta-G solvation = -30570.483631 eV Core-core repulsion = 26241.242140 eV Total energy + Delta-G solvation = -4329.241491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.85753 -39.63354 -38.50252 -37.44481 -36.16096 -35.65197 -34.07192 -33.69089 -31.98608 -31.68107 -29.84222 -28.20692 -26.50774 -25.20627 -24.03427 -22.69769 -22.39146 -22.08689 -20.94004 -20.12148 -19.41589 -18.44006 -17.79944 -17.26184 -16.92489 -16.54995 -16.33149 -15.96559 -15.76285 -15.54463 -15.24693 -14.95622 -14.89454 -14.46568 -14.07636 -13.83066 -13.61492 -13.51556 -13.35809 -13.11493 -12.88671 -12.49266 -12.46756 -12.11831 -11.88242 -11.86794 -11.77714 -11.72655 -11.47671 -11.18777 -11.11406 -10.81217 -10.62581 -10.53878 -10.13975 -10.00174 -9.81935 -9.60247 -9.44023 -9.10620 -8.65475 -8.27410 -8.20302 -6.33729 -3.85363 2.40596 2.58033 2.99494 3.04167 3.12748 3.46607 3.59956 3.68934 3.71335 3.95559 4.07574 4.25871 4.48527 4.60156 4.61787 4.68612 4.74413 4.79852 4.82196 4.84655 4.92118 5.07405 5.09017 5.18118 5.20201 5.31663 5.38326 5.45007 5.47462 5.52680 5.56720 5.60012 5.73209 5.76049 5.77334 5.88054 5.94238 6.18542 6.33956 6.61305 6.70991 6.95088 7.37539 7.44488 7.54948 8.08920 8.11525 8.56470 8.92180 9.39393 9.79085 10.79352 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.002793 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.844505 B =10024.205490 C =12108.971599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.564 6.564 12 C 0.048 3.952 13 N -0.667 5.667 14 C 0.052 3.948 15 C 0.182 3.818 16 H 0.092 0.908 17 N -0.702 5.702 18 C 0.526 3.474 19 O -0.517 6.517 20 C 0.039 3.961 21 H 0.091 0.909 22 C 0.038 3.962 23 O -0.371 6.371 24 C 0.019 3.981 25 C 0.025 3.975 26 O -0.352 6.352 27 C -0.168 4.168 28 C -0.175 4.175 29 C -0.184 4.184 30 H 0.274 0.726 31 H 0.370 0.630 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.353 0.647 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.407 0.593 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.107 -12.185 -5.878 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.234 3.766 11 O -0.446 6.446 12 C -0.085 4.085 13 N -0.300 5.300 14 C -0.079 4.079 15 C 0.077 3.923 16 H 0.110 0.890 17 N -0.355 5.355 18 C 0.311 3.689 19 O -0.392 6.392 20 C -0.023 4.023 21 H 0.108 0.892 22 C -0.039 4.039 23 O -0.290 6.290 24 C -0.058 4.058 25 C -0.052 4.052 26 O -0.270 6.270 27 C -0.188 4.188 28 C -0.212 4.212 29 C -0.220 4.220 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.172 0.828 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.243 0.757 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.128 0.872 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 19.663 -13.296 -5.828 24.441 hybrid contribution 0.666 2.019 0.498 2.184 sum 20.329 -11.277 -5.329 23.850 Atomic orbital electron populations 1.69623 1.05662 1.27525 1.49241 1.25047 0.95490 0.97991 0.97630 0.86664 0.79720 0.84045 0.78887 1.19590 1.20205 1.19558 1.19428 0.79234 0.96625 1.48133 0.86284 1.42208 1.07544 1.06166 1.67021 1.19691 0.88157 0.84585 0.84141 1.90574 1.69392 1.30891 1.53707 1.21709 0.95144 0.90240 1.01370 1.60050 1.05301 1.12888 1.51749 1.22241 0.89114 0.94725 1.01773 1.20443 0.89597 0.91813 0.90455 0.88986 1.45719 1.62721 1.06318 1.20702 1.19831 0.78677 0.82483 0.87912 1.90665 1.48876 1.67014 1.32641 1.22579 0.98076 0.84119 0.97507 0.89164 1.23189 0.90493 0.97160 0.93100 1.88152 1.79206 1.16935 1.44669 1.23311 0.96610 0.82743 1.03128 1.23334 0.93403 0.96633 0.91869 1.88209 1.79401 1.14728 1.44644 1.22690 0.94734 0.98579 1.02825 1.22895 1.02268 1.04549 0.91496 1.23346 1.02293 0.95854 1.00546 0.91585 0.79710 0.89416 0.93677 0.82759 0.90141 0.93646 0.75725 0.90936 0.86399 0.91717 0.87529 0.87302 0.91985 0.87154 0.88985 0.89224 0.89428 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.00 27.74 -169.99 -4.72 14.29 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.28 6.51 56.52 0.37 -4.91 16 7 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 9 N -0.59 -13.58 5.09 -10.96 -0.06 -13.64 16 10 C 0.45 9.66 7.82 -10.98 -0.09 9.57 16 11 O -0.56 -14.50 15.78 5.55 0.09 -14.42 16 12 C 0.05 0.71 6.17 -4.97 -0.03 0.68 16 13 N -0.67 -8.88 5.85 -115.06 -0.67 -9.55 16 14 C 0.05 0.49 5.23 -3.83 -0.02 0.47 16 15 C 0.18 1.82 2.67 -67.94 -0.18 1.63 16 16 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 17 N -0.70 -7.04 3.30 -53.81 -0.18 -7.22 16 18 C 0.53 6.45 6.01 -10.99 -0.07 6.39 16 19 O -0.52 -8.14 13.54 -14.26 -0.19 -8.33 16 20 C 0.04 0.43 3.26 -27.81 -0.09 0.34 16 21 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 22 C 0.04 0.44 6.29 37.24 0.23 0.68 16 23 O -0.37 -4.44 10.85 -48.80 -0.53 -4.97 16 24 C 0.02 0.17 7.05 37.24 0.26 0.44 16 25 C 0.02 0.21 7.05 37.24 0.26 0.47 16 26 O -0.35 -4.34 10.03 -62.51 -0.63 -4.97 16 27 C -0.17 -1.51 5.71 -90.61 -0.52 -2.02 16 28 C -0.17 -1.51 9.73 -26.73 -0.26 -1.77 16 29 C -0.18 -1.87 9.82 -26.73 -0.26 -2.13 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.37 7.45 5.76 -40.82 -0.24 7.21 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.35 5.26 8.43 -39.29 -0.33 4.93 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.41 3.56 8.51 -40.82 -0.35 3.22 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.12 1.28 8.05 -51.93 -0.42 0.86 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.11 0.85 8.11 -51.93 -0.42 0.43 16 45 H 0.09 0.81 6.66 -51.93 -0.35 0.46 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.12 1.52 5.02 -51.93 -0.26 1.26 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -34.82 390.86 -8.61 -43.43 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -7.38 Total: 17.08 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -1.00 Total: 7.13 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.13 Total: -55.13 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.26 Total: -32.68 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.72 Total: 14.29 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.82 -8.61 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276544748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.346 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds