Wall clock time and date at job start Sat Apr 11 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99867 * 2 1 4 4 H 1.48502 * 109.46893 * 240.00052 * 3 2 1 5 5 H 1.48493 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46697 * 120.00463 * 3 2 1 7 7 C 1.38947 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00199 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99978 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00050 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00391 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00368 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47227 * 180.02562 * 12 10 9 14 14 C 1.46908 * 110.99888 * 174.70582 * 13 12 10 15 15 C 1.52996 * 115.54747 * 279.56157 * 14 13 12 16 16 N 1.46499 * 109.47419 * 325.02990 * 15 14 13 17 17 C 1.34769 * 120.00428 * 174.86801 * 16 15 14 18 18 O 1.21277 * 120.00061 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00418 * 180.02562 * 17 16 15 20 20 O 1.42899 * 109.47615 * 180.02562 * 19 17 16 21 21 C 1.42896 * 114.00254 * 180.02562 * 20 19 17 22 22 H 1.09006 * 110.43656 * 328.90235 * 21 20 19 23 23 C 1.54810 * 110.48924 * 206.22156 * 21 20 19 24 24 C 1.54997 * 102.09338 * 220.43927 * 23 21 20 25 25 O 1.44379 * 103.48773 * 37.02068 * 24 23 21 26 26 C 1.43743 * 106.97586 * 319.93879 * 25 24 23 27 27 C 1.52994 * 117.49746 * 133.85079 * 14 13 12 28 28 C 1.52997 * 117.49654 * 65.22615 * 14 13 12 29 29 H 0.96997 * 119.99982 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00131 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46986 * 59.99920 * 12 10 9 32 32 H 1.09003 * 109.46819 * 300.01089 * 12 10 9 33 33 H 1.00900 * 110.99954 * 298.65340 * 13 12 10 34 34 H 1.09005 * 109.47423 * 85.03383 * 15 14 13 35 35 H 1.09004 * 109.46837 * 205.03292 * 15 14 13 36 36 H 0.97007 * 119.99930 * 354.87017 * 16 15 14 37 37 H 1.08999 * 109.47141 * 300.00576 * 19 17 16 38 38 H 1.09007 * 109.47144 * 59.99721 * 19 17 16 39 39 H 1.09011 * 110.90323 * 338.63835 * 23 21 20 40 40 H 1.08998 * 110.91422 * 102.23577 * 23 21 20 41 41 H 1.08998 * 110.61662 * 278.51696 * 24 23 21 42 42 H 1.09000 * 110.61729 * 155.51795 * 24 23 21 43 43 H 1.08998 * 109.87547 * 267.08978 * 26 25 24 44 44 H 1.09009 * 110.00054 * 146.01100 * 26 25 24 45 45 H 1.08997 * 117.50240 * 359.97438 * 27 14 13 46 46 H 1.09002 * 117.49803 * 145.02548 * 27 14 13 47 47 H 1.08998 * 117.49857 * 214.98003 * 28 14 13 48 48 H 1.08996 * 117.50181 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1983 -5.9795 -0.0027 14 6 1.5024 -7.2671 0.1233 15 6 1.0840 -7.6549 1.5429 16 7 2.0913 -7.1814 2.4955 17 6 1.8834 -7.3185 3.8200 18 8 0.8627 -7.8345 4.2234 19 6 2.9193 -6.8309 4.7999 20 8 2.4724 -7.0874 6.1327 21 6 3.3865 -6.6602 7.1446 22 1 4.4129 -6.7307 6.7846 23 6 3.2018 -7.5008 8.4314 24 6 3.3380 -6.4284 9.5422 25 8 2.6917 -5.2697 8.9726 26 6 3.0675 -5.2188 7.5861 27 6 1.9245 -8.3936 -0.8219 28 6 0.5821 -7.6880 -1.0242 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3907 -0.0005 31 1 0.6167 -4.9201 -0.8919 32 1 0.6172 -4.9212 0.8880 33 1 2.7766 -5.9604 -0.8293 34 1 0.1215 -7.1992 1.7754 35 1 0.9990 -8.7394 1.6132 36 1 2.9079 -6.7690 2.1729 37 1 3.8594 -7.3541 4.6252 38 1 3.0697 -5.7595 4.6665 39 1 2.2149 -7.9631 8.4558 40 1 3.9848 -8.2540 8.5199 41 1 4.3879 -6.2200 9.7479 42 1 2.8240 -6.7476 10.4489 43 1 3.9495 -4.5900 7.4641 44 1 2.2447 -4.8223 6.9911 45 1 2.7182 -8.1793 -1.5376 46 1 1.9043 -9.4115 -0.4325 47 1 -0.3211 -8.2415 -0.7678 48 1 0.4926 -7.0093 -1.8724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277060607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:59 Heat of formation + Delta-G solvation = -154.581227 kcal Electronic energy + Delta-G solvation = -29648.587776 eV Core-core repulsion = 25317.663366 eV Total energy + Delta-G solvation = -4330.924409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10351 -40.56843 -40.13576 -39.21103 -37.92249 -35.99563 -35.21626 -33.89802 -33.18769 -32.50181 -30.26305 -29.40860 -28.26375 -26.90960 -25.88940 -23.73023 -23.38000 -22.33789 -21.55034 -21.10083 -20.74820 -19.89060 -18.45003 -18.38980 -17.89331 -17.42711 -17.16913 -17.00003 -16.73184 -16.58311 -16.39966 -16.07610 -15.84372 -15.62562 -15.42159 -15.15300 -14.85210 -14.68263 -14.16023 -14.00241 -13.83973 -13.56037 -13.53724 -13.49315 -13.17501 -12.93419 -12.82193 -12.75226 -12.43098 -12.39843 -12.36893 -12.13736 -11.84804 -11.72573 -11.48855 -11.11391 -10.99938 -10.89743 -10.51097 -10.31404 -10.02203 -10.01393 -9.40293 -8.46574 -5.95496 1.39592 1.41748 1.52467 1.55462 1.77371 2.05007 2.27230 2.57275 2.88788 2.92940 3.00888 3.20938 3.42542 3.47586 3.67154 3.76866 3.84236 3.88076 3.95102 4.01046 4.16840 4.20404 4.26510 4.30394 4.36153 4.41327 4.51254 4.52800 4.63789 4.67731 4.71911 4.75105 4.77565 4.79052 4.88646 5.00304 5.03658 5.21003 5.40062 5.41300 5.79180 5.83611 6.04443 6.05518 6.33200 6.58737 6.59136 7.12108 7.22504 7.56107 8.10054 8.70626 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.006965 B = 0.002986 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4018.960826 B = 9375.761587 C =12754.366494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.083 0.917 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.616 6.616 12 C 0.071 3.929 13 N -0.633 5.633 14 C 0.021 3.979 15 C 0.173 3.827 16 N -0.701 5.701 17 C 0.508 3.492 18 O -0.578 6.578 19 C 0.041 3.959 20 O -0.378 6.378 21 C 0.050 3.950 22 H 0.111 0.889 23 C -0.149 4.149 24 C 0.043 3.957 25 O -0.405 6.405 26 C 0.017 3.983 27 C -0.148 4.148 28 C -0.198 4.198 29 H 0.277 0.723 30 H 0.394 0.606 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.354 0.646 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.419 0.581 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.111 0.889 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.636 -18.388 8.055 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.101 0.899 9 N -0.212 5.212 10 C 0.229 3.771 11 O -0.502 6.502 12 C -0.061 4.061 13 N -0.265 5.265 14 C -0.072 4.072 15 C 0.049 3.951 16 N -0.354 5.354 17 C 0.294 3.706 18 O -0.458 6.458 19 C -0.038 4.038 20 O -0.297 6.297 21 C -0.008 4.008 22 H 0.129 0.871 23 C -0.186 4.186 24 C -0.033 4.033 25 O -0.325 6.325 26 C -0.060 4.060 27 C -0.185 4.185 28 C -0.238 4.238 29 H 0.086 0.914 30 H 0.228 0.772 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.174 0.826 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.257 0.743 37 H 0.135 0.865 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.104 0.896 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.124 0.876 46 H 0.137 0.863 47 H 0.129 0.871 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.419 -18.456 9.152 21.578 hybrid contribution -0.255 1.290 -1.348 1.883 sum 6.163 -17.166 7.804 19.839 Atomic orbital electron populations 1.69673 1.06949 1.29326 1.50401 1.26050 0.96485 1.02511 0.96343 0.85001 0.77753 0.76649 0.79049 1.19475 1.19824 1.19626 1.19638 0.92759 0.83889 1.49829 0.89950 1.41953 1.09284 1.04860 1.65094 1.20744 0.88273 0.85858 0.82259 1.90488 1.15362 1.87895 1.56460 1.21418 0.93924 0.88224 1.02566 1.59616 1.20806 0.98924 1.47130 1.21805 1.03193 0.90897 0.91280 1.20714 0.90828 0.99090 0.84516 1.45681 1.23963 1.61511 1.04295 1.20702 0.87582 0.78621 0.83668 1.90690 1.30077 1.45600 1.79437 1.22399 0.96700 1.02409 0.82293 1.88066 1.45642 1.82415 1.13538 1.23854 0.94453 0.93169 0.89304 0.87086 1.23247 1.04551 0.98873 0.91946 1.23797 0.99115 0.83412 0.96994 1.88877 1.72345 1.48347 1.22886 1.23847 1.01309 0.97734 0.83074 1.23423 0.97932 0.96814 1.00332 1.23590 0.95800 1.04444 0.99938 0.91380 0.77249 0.91619 0.89227 0.82561 0.92713 0.89901 0.74286 0.86532 0.89045 0.90922 0.86605 0.89643 0.87457 0.89814 0.91039 0.87647 0.86279 0.87064 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -28.85 5.29 -306.98 -1.62 -30.47 16 10 C 0.44 19.88 7.83 87.66 0.69 20.57 16 11 O -0.62 -31.66 15.89 -3.08 -0.05 -31.71 16 12 C 0.07 2.28 5.95 85.56 0.51 2.79 16 13 N -0.63 -16.88 5.16 -474.16 -2.45 -19.33 16 14 C 0.02 0.42 2.12 3.52 0.01 0.43 16 15 C 0.17 3.93 5.73 86.38 0.49 4.42 16 16 N -0.70 -16.83 5.40 -463.07 -2.50 -19.33 16 17 C 0.51 14.18 7.91 87.66 0.69 14.87 16 18 O -0.58 -21.27 16.49 16.02 0.26 -21.00 16 19 C 0.04 0.88 6.28 71.24 0.45 1.33 16 20 O -0.38 -9.65 9.49 -129.94 -1.23 -10.88 16 21 C 0.05 0.91 3.51 31.58 0.11 1.02 16 22 H 0.11 1.29 7.86 -2.38 -0.02 1.27 16 23 C -0.15 -2.28 6.90 31.90 0.22 -2.06 16 24 C 0.04 0.64 7.72 72.67 0.56 1.20 16 25 O -0.40 -9.76 11.52 -148.98 -1.72 -11.48 16 26 C 0.02 0.37 7.52 72.35 0.54 0.92 16 27 C -0.15 -2.19 9.87 30.59 0.30 -1.89 16 28 C -0.20 -3.32 9.67 30.59 0.30 -3.03 16 29 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.39 19.16 7.90 -92.71 -0.73 18.43 16 31 H 0.07 1.90 7.64 -2.39 -0.02 1.88 16 32 H 0.09 2.87 8.00 -2.39 -0.02 2.85 16 33 H 0.35 9.58 8.39 -89.69 -0.75 8.83 16 34 H 0.05 1.44 8.13 -2.38 -0.02 1.42 16 35 H 0.08 1.69 7.91 -2.39 -0.02 1.67 16 36 H 0.42 9.53 7.75 -92.70 -0.72 8.81 16 37 H 0.12 1.63 8.10 -2.39 -0.02 1.61 16 38 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.07 1.42 8.09 -2.38 -0.02 1.40 16 40 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 1.84 7.97 -2.38 -0.02 1.82 16 45 H 0.11 1.48 8.07 -2.39 -0.02 1.46 16 46 H 0.12 1.40 8.05 -2.39 -0.02 1.38 16 47 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.10 1.70 7.88 -2.39 -0.02 1.69 16 Total: -1.00 -75.65 405.42 -2.04 -77.69 By element: Atomic # 1 Polarization: 50.18 SS G_CDS: -1.20 Total: 48.98 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 6.15 Total: 22.66 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -6.29 Total: -118.74 kcal Atomic # 8 Polarization: -72.33 SS G_CDS: -2.73 Total: -75.07 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -75.65 -2.04 -77.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277060607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.892 kcal (2) G-P(sol) polarization free energy of solvation -75.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds