Wall clock time and date at job start Sat Apr 11 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00082 * 2 1 4 4 H 1.48494 * 109.47333 * 269.99975 * 3 2 1 5 5 H 1.48497 * 109.47275 * 30.00676 * 3 2 1 6 6 H 1.48500 * 109.46912 * 150.00218 * 3 2 1 7 7 C 1.38949 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99955 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00090 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00367 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99828 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00402 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47002 * 179.97438 * 12 10 9 14 14 C 1.46899 * 110.99800 * 187.06991 * 13 12 10 15 15 C 1.53001 * 115.55338 * 295.05094 * 14 13 12 16 16 N 1.46500 * 109.47008 * 270.32410 * 15 14 13 17 17 C 1.34777 * 119.99888 * 187.41915 * 16 15 14 18 18 O 1.21284 * 119.99804 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00087 * 180.02562 * 17 16 15 20 20 O 1.42898 * 109.47042 * 180.02562 * 19 17 16 21 21 C 1.42900 * 113.99747 * 179.97438 * 20 19 17 22 22 H 1.09006 * 110.46144 * 27.38720 * 21 20 19 23 23 C 1.54507 * 110.51205 * 149.99796 * 21 20 19 24 24 C 1.54480 * 104.06434 * 118.64399 * 23 21 20 25 25 O 1.44426 * 104.80471 * 23.97880 * 24 23 21 26 26 C 1.44427 * 105.27145 * 319.49153 * 25 24 23 27 27 C 1.53002 * 117.51562 * 80.75186 * 14 13 12 28 28 C 1.53002 * 60.00250 * 107.48183 * 27 14 13 29 29 H 0.96998 * 119.99446 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00087 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.46743 * 60.00052 * 12 10 9 32 32 H 1.08993 * 109.47113 * 299.99899 * 12 10 9 33 33 H 1.00896 * 110.99779 * 63.12352 * 13 12 10 34 34 H 1.08998 * 109.46999 * 150.32388 * 15 14 13 35 35 H 1.09000 * 109.47235 * 30.32380 * 15 14 13 36 36 H 0.96995 * 120.00281 * 7.41775 * 16 15 14 37 37 H 1.09001 * 109.47307 * 59.99529 * 19 17 16 38 38 H 1.09005 * 109.46599 * 300.00219 * 19 17 16 39 39 H 1.09001 * 110.50833 * 237.28777 * 23 21 20 40 40 H 1.08999 * 110.51124 * 359.85664 * 23 21 20 41 41 H 1.09000 * 110.37035 * 142.80811 * 24 23 21 42 42 H 1.08999 * 110.37260 * 265.14722 * 24 23 21 43 43 H 1.09007 * 110.37234 * 281.67655 * 26 25 24 44 44 H 1.08999 * 110.37036 * 159.34622 * 26 25 24 45 45 H 1.09005 * 117.49881 * 214.97138 * 27 14 13 46 46 H 1.09002 * 117.49869 * 359.97438 * 27 14 13 47 47 H 1.08993 * 117.49788 * 252.51170 * 28 27 14 48 48 H 1.08992 * 117.50032 * 107.48760 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 7 2.1982 -5.9795 -0.0027 14 6 1.5058 -7.2640 -0.1721 15 6 0.5652 -7.6619 0.9672 16 7 1.3094 -8.4281 1.9698 17 6 0.6553 -9.0136 2.9925 18 8 -0.5494 -8.9065 3.0824 19 6 1.4209 -9.8013 4.0242 20 8 0.5126 -10.3200 4.9979 21 6 1.1399 -11.0876 6.0271 22 1 2.1692 -10.7597 6.1734 23 6 0.3437 -10.9772 7.3465 24 6 -0.0911 -12.4291 7.6453 25 8 0.8706 -13.2527 6.9505 26 6 1.0921 -12.5933 5.6848 27 6 1.1067 -7.6700 -1.5922 28 6 2.2618 -8.3850 -0.8883 29 1 -0.4849 0.8401 0.0004 30 1 0.3533 -2.3907 -0.0016 31 1 0.6173 -4.9205 -0.8925 32 1 0.6167 -4.9209 0.8875 33 1 2.7568 -5.9780 0.8375 34 1 -0.2463 -8.2728 0.5717 35 1 0.1528 -6.7644 1.4282 36 1 2.2728 -8.5141 1.8977 37 1 2.1462 -9.1510 4.5133 38 1 1.9422 -10.6261 3.5383 39 1 0.9798 -10.5968 8.1458 40 1 -0.5271 -10.3350 7.2145 41 1 -0.0530 -12.6236 8.7172 42 1 -1.0947 -12.6114 7.2611 43 1 0.2699 -12.8007 4.9998 44 1 2.0390 -12.9140 5.2504 45 1 0.1740 -8.2206 -1.7149 46 1 1.3575 -6.9837 -2.4011 47 1 3.2726 -8.1693 -1.2341 48 1 2.0890 -9.4059 -0.5479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277060609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:03 Heat of formation + Delta-G solvation = -127.501801 kcal Electronic energy + Delta-G solvation = -28962.441638 eV Core-core repulsion = 24632.691481 eV Total energy + Delta-G solvation = -4329.750157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.40149 -39.83250 -38.75513 -37.81563 -37.23286 -34.34529 -34.01020 -32.81638 -31.91662 -31.20133 -29.62800 -28.73803 -26.77588 -26.00320 -24.12117 -23.42513 -22.58029 -21.68529 -20.81147 -19.82425 -19.22565 -17.89675 -17.85123 -17.76097 -16.78266 -16.64999 -16.30968 -16.15463 -15.65548 -15.41987 -15.28920 -15.00064 -14.77282 -14.38628 -14.19594 -14.01610 -13.83484 -13.60792 -13.41130 -13.06983 -12.85794 -12.62221 -12.51125 -12.26029 -12.09675 -11.78530 -11.60670 -11.56255 -11.44745 -11.26688 -11.05346 -10.67486 -10.42080 -10.40780 -10.37833 -10.22805 -10.05049 -9.86047 -9.52191 -9.33131 -8.59897 -8.15657 -7.97766 -6.42756 -3.83830 2.33331 2.36527 3.16916 3.25585 3.28496 3.31275 3.57883 3.72084 3.88434 3.96480 4.01908 4.22192 4.25534 4.37288 4.40480 4.46037 4.64214 4.70293 4.74730 4.79274 4.82007 4.88391 5.14988 5.16153 5.21942 5.22840 5.25559 5.38240 5.40227 5.46983 5.47325 5.55816 5.56587 5.81428 5.89393 5.93697 6.07391 6.13429 6.17293 6.24535 6.59159 7.10031 7.19717 7.50314 7.53975 7.94173 8.04583 8.59701 9.16500 9.52826 10.04078 10.74873 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.001813 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.343749 B =15439.825182 C =16686.683726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.625 5.625 14 C 0.013 3.987 15 C 0.128 3.872 16 N -0.723 5.723 17 C 0.512 3.488 18 O -0.519 6.519 19 C 0.042 3.958 20 O -0.348 6.348 21 C 0.053 3.947 22 H 0.081 0.919 23 C -0.156 4.156 24 C 0.045 3.955 25 O -0.372 6.372 26 C 0.023 3.977 27 C -0.147 4.147 28 C -0.154 4.154 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.350 0.650 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.403 0.597 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 -24.863 8.921 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.256 5.256 14 C -0.080 4.080 15 C 0.003 3.997 16 N -0.377 5.377 17 C 0.297 3.703 18 O -0.393 6.393 19 C -0.038 4.038 20 O -0.266 6.266 21 C -0.005 4.005 22 H 0.099 0.901 23 C -0.194 4.194 24 C -0.031 4.031 25 O -0.291 6.291 26 C -0.054 4.054 27 C -0.185 4.185 28 C -0.191 4.191 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.170 0.830 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.237 0.763 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.647 -24.684 8.408 26.085 hybrid contribution -0.009 1.025 0.735 1.261 sum 0.637 -23.659 9.143 25.373 Atomic orbital electron populations 1.69616 1.05934 1.28188 1.50450 1.25273 0.95645 0.99747 0.97301 0.85850 0.79196 0.80788 0.78403 1.20377 1.20932 1.19446 1.19696 0.93353 0.82212 1.47698 0.87923 1.41860 1.09225 1.04588 1.64284 1.19762 0.88362 0.84620 0.84607 1.90523 1.13710 1.87084 1.55426 1.21677 0.94298 0.90693 1.01520 1.59939 1.21993 0.98386 1.45237 1.21699 1.00484 0.92449 0.93381 1.21475 0.94123 0.96054 0.88036 1.45883 1.11433 1.54002 1.26388 1.20199 0.88280 0.79830 0.82023 1.90758 1.14212 1.59686 1.74687 1.22306 0.92505 0.98182 0.90828 1.88095 1.32253 1.69337 1.36957 1.23603 0.97386 0.91422 0.88111 0.90071 1.23038 1.02038 0.98571 0.95749 1.23438 0.92965 0.88536 0.98203 1.89150 1.62409 1.48037 1.29495 1.23961 1.02629 0.91279 0.87548 1.23087 0.98970 1.02612 0.93881 1.23048 0.98173 0.95145 1.02778 0.91843 0.77448 0.89348 0.93637 0.82979 0.90426 0.90824 0.76293 0.89800 0.90070 0.89534 0.88649 0.88644 0.91706 0.90882 0.88661 0.88568 0.87551 0.87650 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 10 C 0.44 10.26 7.84 -10.99 -0.09 10.18 16 11 O -0.58 -15.58 15.93 5.54 0.09 -15.50 16 12 C 0.05 0.86 5.88 -4.98 -0.03 0.83 16 13 N -0.62 -9.27 6.12 -101.21 -0.62 -9.88 16 14 C 0.01 0.14 1.79 -131.60 -0.24 -0.09 16 15 C 0.13 1.41 5.78 -4.04 -0.02 1.39 16 16 N -0.72 -6.63 5.39 -60.29 -0.33 -6.96 16 17 C 0.51 5.68 7.91 -10.98 -0.09 5.59 16 18 O -0.52 -8.30 16.47 -14.36 -0.24 -8.54 16 19 C 0.04 0.32 6.25 36.01 0.23 0.54 16 20 O -0.35 -3.46 9.51 -55.14 -0.52 -3.99 16 21 C 0.05 0.38 3.61 -25.17 -0.09 0.29 16 22 H 0.08 0.44 7.82 -51.93 -0.41 0.03 16 23 C -0.16 -1.05 6.90 -25.16 -0.17 -1.22 16 24 C 0.05 0.30 7.63 37.93 0.29 0.59 16 25 O -0.37 -3.28 11.65 -35.23 -0.41 -3.69 16 26 C 0.02 0.17 7.38 37.93 0.28 0.45 16 27 C -0.15 -1.50 10.05 -26.73 -0.27 -1.77 16 28 C -0.15 -1.39 9.80 -26.73 -0.26 -1.65 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 31 H 0.09 1.42 8.06 -51.92 -0.42 1.00 16 32 H 0.05 0.73 6.85 -51.93 -0.36 0.37 16 33 H 0.35 5.23 8.77 -39.29 -0.34 4.89 16 34 H 0.08 0.87 7.83 -51.93 -0.41 0.47 16 35 H 0.07 0.96 6.58 -51.93 -0.34 0.61 16 36 H 0.40 2.68 8.29 -40.82 -0.34 2.34 16 37 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.72 8.00 -51.93 -0.42 0.30 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.57 8.09 -51.92 -0.42 0.15 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.84 8.03 -51.93 -0.42 0.42 16 46 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 47 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 405.20 15.07 6.11 6.11 Total: -1.00 -35.38 405.20 -8.48 -43.86 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -7.50 Total: 13.54 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -0.70 Total: 7.13 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.28 Total: -54.93 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -1.08 Total: -31.71 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.38 -8.48 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277060609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.638 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds