Wall clock time and date at job start Sat Apr 11 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00082 * 2 1 4 4 H 1.48494 * 109.47333 * 269.99975 * 3 2 1 5 5 H 1.48497 * 109.47275 * 30.00676 * 3 2 1 6 6 H 1.48500 * 109.46912 * 150.00218 * 3 2 1 7 7 C 1.38949 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99955 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00090 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00367 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99828 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00402 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47002 * 179.97438 * 12 10 9 14 14 C 1.46899 * 110.99800 * 187.06991 * 13 12 10 15 15 C 1.53001 * 115.55338 * 295.05094 * 14 13 12 16 16 N 1.46500 * 109.47008 * 270.32410 * 15 14 13 17 17 C 1.34777 * 119.99888 * 187.41915 * 16 15 14 18 18 O 1.21284 * 119.99804 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00087 * 180.02562 * 17 16 15 20 20 O 1.42898 * 109.47042 * 180.02562 * 19 17 16 21 21 C 1.42900 * 113.99747 * 179.97438 * 20 19 17 22 22 H 1.09006 * 110.46144 * 27.38720 * 21 20 19 23 23 C 1.54507 * 110.51205 * 149.99796 * 21 20 19 24 24 C 1.54480 * 104.06434 * 118.64399 * 23 21 20 25 25 O 1.44426 * 104.80471 * 23.97880 * 24 23 21 26 26 C 1.44427 * 105.27145 * 319.49153 * 25 24 23 27 27 C 1.53002 * 117.51562 * 80.75186 * 14 13 12 28 28 C 1.53002 * 60.00250 * 107.48183 * 27 14 13 29 29 H 0.96998 * 119.99446 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00087 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.46743 * 60.00052 * 12 10 9 32 32 H 1.08993 * 109.47113 * 299.99899 * 12 10 9 33 33 H 1.00896 * 110.99779 * 63.12352 * 13 12 10 34 34 H 1.08998 * 109.46999 * 150.32388 * 15 14 13 35 35 H 1.09000 * 109.47235 * 30.32380 * 15 14 13 36 36 H 0.96995 * 120.00281 * 7.41775 * 16 15 14 37 37 H 1.09001 * 109.47307 * 59.99529 * 19 17 16 38 38 H 1.09005 * 109.46599 * 300.00219 * 19 17 16 39 39 H 1.09001 * 110.50833 * 237.28777 * 23 21 20 40 40 H 1.08999 * 110.51124 * 359.85664 * 23 21 20 41 41 H 1.09000 * 110.37035 * 142.80811 * 24 23 21 42 42 H 1.08999 * 110.37260 * 265.14722 * 24 23 21 43 43 H 1.09007 * 110.37234 * 281.67655 * 26 25 24 44 44 H 1.08999 * 110.37036 * 159.34622 * 26 25 24 45 45 H 1.09005 * 117.49881 * 214.97138 * 27 14 13 46 46 H 1.09002 * 117.49869 * 359.97438 * 27 14 13 47 47 H 1.08993 * 117.49788 * 252.51170 * 28 27 14 48 48 H 1.08992 * 117.50032 * 107.48760 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 7 2.1982 -5.9795 -0.0027 14 6 1.5058 -7.2640 -0.1721 15 6 0.5652 -7.6619 0.9672 16 7 1.3094 -8.4281 1.9698 17 6 0.6553 -9.0136 2.9925 18 8 -0.5494 -8.9065 3.0824 19 6 1.4209 -9.8013 4.0242 20 8 0.5126 -10.3200 4.9979 21 6 1.1399 -11.0876 6.0271 22 1 2.1692 -10.7597 6.1734 23 6 0.3437 -10.9772 7.3465 24 6 -0.0911 -12.4291 7.6453 25 8 0.8706 -13.2527 6.9505 26 6 1.0921 -12.5933 5.6848 27 6 1.1067 -7.6700 -1.5922 28 6 2.2618 -8.3850 -0.8883 29 1 -0.4849 0.8401 0.0004 30 1 0.3533 -2.3907 -0.0016 31 1 0.6173 -4.9205 -0.8925 32 1 0.6167 -4.9209 0.8875 33 1 2.7568 -5.9780 0.8375 34 1 -0.2463 -8.2728 0.5717 35 1 0.1528 -6.7644 1.4282 36 1 2.2728 -8.5141 1.8977 37 1 2.1462 -9.1510 4.5133 38 1 1.9422 -10.6261 3.5383 39 1 0.9798 -10.5968 8.1458 40 1 -0.5271 -10.3350 7.2145 41 1 -0.0530 -12.6236 8.7172 42 1 -1.0947 -12.6114 7.2611 43 1 0.2699 -12.8007 4.9998 44 1 2.0390 -12.9140 5.2504 45 1 0.1740 -8.2206 -1.7149 46 1 1.3575 -6.9837 -2.4011 47 1 3.2726 -8.1693 -1.2341 48 1 2.0890 -9.4059 -0.5479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277060609.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:02 Heat of formation + Delta-G solvation = -156.504860 kcal Electronic energy + Delta-G solvation = -28963.699305 eV Core-core repulsion = 24632.691481 eV Total energy + Delta-G solvation = -4331.007824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.16717 -40.56101 -40.14778 -39.14139 -37.92733 -36.02556 -35.22014 -34.10495 -33.21984 -32.47109 -30.25024 -29.38928 -28.33272 -26.87597 -25.89511 -23.94577 -23.39986 -22.21665 -21.63434 -21.13558 -20.68445 -19.90352 -18.62556 -18.40359 -17.86320 -17.33815 -17.24326 -16.97894 -16.84322 -16.55002 -16.37739 -16.08678 -15.83265 -15.77220 -15.44524 -15.11650 -14.97283 -14.69131 -14.20652 -14.09924 -13.84632 -13.66037 -13.59260 -13.45558 -13.17405 -13.02624 -12.77401 -12.64519 -12.42898 -12.30074 -12.29021 -12.12981 -11.76798 -11.53908 -11.50306 -11.27654 -10.96861 -10.74718 -10.62144 -10.36908 -10.19998 -10.02879 -9.48049 -8.47576 -5.96730 1.37441 1.41125 1.51175 1.53992 1.67336 2.03466 2.26975 2.59985 2.76509 2.97377 3.14568 3.19351 3.44344 3.50651 3.55155 3.70351 3.80674 3.93611 3.95607 4.09185 4.17532 4.22540 4.25302 4.26694 4.30545 4.33084 4.53449 4.58290 4.64794 4.67398 4.70919 4.78675 4.81413 4.82261 4.87597 4.98883 5.08346 5.27185 5.36620 5.39784 5.62784 5.84404 6.05187 6.05740 6.34576 6.48339 6.58184 7.11133 7.16097 7.54620 8.09397 8.69778 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.001813 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.343749 B =15439.825182 C =16686.683726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.081 0.919 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.620 6.620 12 C 0.067 3.933 13 N -0.634 5.634 14 C 0.005 3.995 15 C 0.136 3.864 16 N -0.708 5.708 17 C 0.508 3.492 18 O -0.577 6.577 19 C 0.043 3.957 20 O -0.380 6.380 21 C 0.051 3.949 22 H 0.105 0.895 23 C -0.158 4.158 24 C 0.042 3.958 25 O -0.391 6.391 26 C 0.022 3.978 27 C -0.151 4.151 28 C -0.129 4.129 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.348 0.652 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.418 0.582 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.859 -25.976 9.105 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.099 0.901 9 N -0.211 5.211 10 C 0.227 3.773 11 O -0.506 6.506 12 C -0.065 4.065 13 N -0.265 5.265 14 C -0.088 4.088 15 C 0.010 3.990 16 N -0.363 5.363 17 C 0.295 3.705 18 O -0.456 6.456 19 C -0.036 4.036 20 O -0.299 6.299 21 C -0.006 4.006 22 H 0.123 0.877 23 C -0.195 4.195 24 C -0.035 4.035 25 O -0.311 6.311 26 C -0.055 4.055 27 C -0.189 4.189 28 C -0.166 4.166 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.168 0.832 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.255 0.745 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.111 0.889 47 H 0.120 0.880 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.722 -25.822 8.578 27.264 hybrid contribution -0.326 1.306 0.657 1.498 sum 1.396 -24.516 9.235 26.235 Atomic orbital electron populations 1.69683 1.06897 1.29304 1.50307 1.26076 0.96555 1.02529 0.96278 0.84906 0.77874 0.76760 0.78673 1.19595 1.19646 1.19639 1.19679 0.92740 0.83966 1.49936 0.90146 1.41948 1.09310 1.04798 1.65068 1.20807 0.88252 0.85998 0.82254 1.90488 1.15638 1.87953 1.56532 1.21456 0.93994 0.88294 1.02748 1.59904 1.22018 0.99292 1.45265 1.21646 1.01612 0.91511 0.93990 1.21255 0.94222 0.95345 0.88132 1.45766 1.12073 1.52887 1.25526 1.20913 0.87803 0.79351 0.82458 1.90734 1.16795 1.61931 1.76091 1.22463 0.91827 0.99320 0.90017 1.88064 1.33989 1.69895 1.37964 1.23750 0.98402 0.91054 0.87436 0.87726 1.23076 1.01863 0.98245 0.96364 1.23551 0.92436 0.88422 0.99042 1.89125 1.62804 1.48919 1.30212 1.24044 1.03212 0.91376 0.86887 1.23173 1.00423 1.02709 0.92587 1.23120 0.97532 0.95435 1.00561 0.91318 0.77117 0.88006 0.92286 0.83205 0.90438 0.93093 0.74509 0.87301 0.86576 0.87955 0.90030 0.86987 0.92235 0.92155 0.86554 0.86853 0.88929 0.87961 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.99 43.01 29.55 68.60 2.03 45.03 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 9 N -0.57 -29.62 5.29 -306.98 -1.62 -31.24 16 10 C 0.44 20.76 7.84 87.66 0.69 21.45 16 11 O -0.62 -33.79 15.93 -3.09 -0.05 -33.84 16 12 C 0.07 2.28 5.88 85.56 0.50 2.79 16 13 N -0.63 -18.25 6.12 -474.13 -2.90 -21.15 16 14 C 0.00 0.10 1.79 3.53 0.01 0.11 16 15 C 0.14 2.84 5.78 86.38 0.50 3.34 16 16 N -0.71 -11.68 5.39 -463.05 -2.50 -14.17 16 17 C 0.51 10.64 7.91 87.66 0.69 11.33 16 18 O -0.58 -18.60 16.47 15.99 0.26 -18.34 16 19 C 0.04 0.55 6.25 71.24 0.45 0.99 16 20 O -0.38 -7.10 9.51 -129.94 -1.24 -8.33 16 21 C 0.05 0.65 3.61 31.61 0.11 0.76 16 22 H 0.10 0.80 7.82 -2.38 -0.02 0.78 16 23 C -0.16 -1.96 6.90 31.61 0.22 -1.74 16 24 C 0.04 0.53 7.63 72.49 0.55 1.08 16 25 O -0.39 -6.47 11.65 -148.98 -1.74 -8.20 16 26 C 0.02 0.28 7.38 72.48 0.53 0.82 16 27 C -0.15 -2.77 10.05 30.60 0.31 -2.46 16 28 C -0.13 -1.96 9.80 30.60 0.30 -1.66 16 29 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.40 19.56 7.90 -92.71 -0.73 18.82 16 31 H 0.10 3.20 8.06 -2.38 -0.02 3.18 16 32 H 0.06 1.87 6.85 -2.39 -0.02 1.85 16 33 H 0.35 10.14 8.77 -89.70 -0.79 9.36 16 34 H 0.08 1.65 7.83 -2.39 -0.02 1.63 16 35 H 0.05 1.31 6.58 -2.39 -0.02 1.29 16 36 H 0.42 4.38 8.29 -92.71 -0.77 3.61 16 37 H 0.11 0.85 8.11 -2.39 -0.02 0.83 16 38 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 1.24 8.00 -2.39 -0.02 1.22 16 41 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.91 8.09 -2.38 -0.02 0.89 16 44 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.11 1.70 8.03 -2.38 -0.02 1.68 16 46 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -78.90 405.20 -2.61 -81.50 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -1.28 Total: 40.33 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 6.14 Total: 18.29 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -6.74 Total: -116.44 kcal Atomic # 8 Polarization: -65.96 SS G_CDS: -2.76 Total: -68.71 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -78.90 -2.61 -81.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277060609.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.001 kcal (2) G-P(sol) polarization free energy of solvation -78.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds