Wall clock time and date at job start Sat Apr 11 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99910 * 2 1 4 4 H 1.48502 * 109.46672 * 269.99631 * 3 2 1 5 5 H 1.48499 * 109.47022 * 29.99540 * 3 2 1 6 6 H 1.48499 * 109.47229 * 150.00018 * 3 2 1 7 7 C 1.38809 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99608 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00405 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00165 * 185.85580 * 9 7 2 11 11 C 1.53003 * 109.61666 * 58.94874 * 10 9 7 12 12 N 1.46501 * 109.47091 * 54.93716 * 11 10 9 13 13 C 1.34775 * 120.00108 * 177.09089 * 12 11 10 14 14 O 1.21289 * 119.99722 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00198 * 179.97438 * 13 12 11 16 16 H 1.08994 * 109.87405 * 304.29986 * 15 13 12 17 17 C 1.54103 * 109.87635 * 65.30994 * 15 13 12 18 18 C 1.54812 * 104.18902 * 121.45319 * 17 15 13 19 19 C 1.54993 * 102.09422 * 20.88010 * 18 17 15 20 20 H 1.09004 * 110.62141 * 81.47456 * 19 18 17 21 21 C 1.50695 * 110.61961 * 204.47893 * 19 18 17 22 22 N 1.34784 * 119.99605 * 294.99446 * 21 19 18 23 23 O 1.21277 * 120.00496 * 114.99983 * 21 19 18 24 24 O 1.43748 * 109.87807 * 183.29042 * 15 13 12 25 25 C 1.53177 * 109.54165 * 179.16991 * 10 9 7 26 26 C 1.53093 * 109.21714 * 62.85411 * 25 10 9 27 27 O 1.43039 * 109.34048 * 57.57507 * 26 25 10 28 28 C 1.42896 * 114.13729 * 298.88325 * 27 26 25 29 29 C 1.53094 * 109.41733 * 61.15797 * 28 27 26 30 30 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99662 * 5.85403 * 9 7 2 32 32 H 1.09001 * 109.46940 * 174.94122 * 11 10 9 33 33 H 1.09001 * 109.47080 * 294.93994 * 11 10 9 34 34 H 0.96998 * 120.00028 * 357.09483 * 12 11 10 35 35 H 1.09005 * 110.48452 * 240.13012 * 17 15 13 36 36 H 1.08998 * 110.48968 * 2.64430 * 17 15 13 37 37 H 1.09005 * 110.90757 * 139.07691 * 18 17 15 38 38 H 1.08996 * 110.90991 * 262.67912 * 18 17 15 39 39 H 0.96990 * 119.99871 * 0.02562 * 22 21 19 40 40 H 0.96998 * 119.99340 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.52258 * 182.79338 * 25 10 9 42 42 H 1.09004 * 109.52425 * 302.91495 * 25 10 9 43 43 H 1.08997 * 109.48112 * 177.61800 * 26 25 10 44 44 H 1.09000 * 109.48099 * 297.65967 * 26 25 10 45 45 H 1.09001 * 109.48084 * 301.18319 * 28 27 26 46 46 H 1.08998 * 109.48556 * 181.14445 * 28 27 26 47 47 H 1.08994 * 109.52650 * 182.48864 * 29 28 27 48 48 H 1.09004 * 109.57240 * 62.32842 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0523 -3.6534 0.1305 11 6 2.8397 -3.6611 1.4424 12 7 1.9303 -3.3932 2.5593 13 6 2.3939 -3.4096 3.8247 14 8 3.5642 -3.6458 4.0387 15 6 1.4586 -3.1334 4.9735 16 1 0.9696 -2.1700 4.8298 17 6 0.4002 -4.2495 5.0675 18 6 0.5842 -4.8280 6.4916 19 6 1.3099 -3.6692 7.2216 20 1 0.5952 -2.9135 7.5476 21 6 2.1018 -4.1926 8.3920 22 7 1.4654 -4.7538 9.4392 23 8 3.3117 -4.1088 8.3917 24 8 2.1913 -3.1299 6.2103 25 6 1.0580 -4.8185 0.1229 26 6 0.3297 -4.8506 -1.2234 27 8 1.2887 -4.9687 -2.2781 28 6 2.2155 -3.8834 -2.3494 29 6 3.0181 -3.8130 -1.0477 30 1 -0.4850 0.8401 -0.0004 31 1 0.3594 -2.3903 -0.0855 32 1 3.3068 -4.6363 1.5801 33 1 3.6101 -2.8908 1.4083 34 1 0.9945 -3.2039 2.3881 35 1 -0.6015 -3.8362 4.9500 36 1 0.5863 -5.0160 4.3152 37 1 -0.3805 -5.0358 6.9547 38 1 1.2049 -5.7237 6.4705 39 1 0.4978 -4.8211 9.4393 40 1 1.9752 -5.0904 10.1927 41 1 1.5943 -5.7561 0.2693 42 1 0.3332 -4.6842 0.9259 43 1 -0.3485 -5.7034 -1.2495 44 1 -0.2389 -3.9295 -1.3511 45 1 1.6714 -2.9496 -2.4918 46 1 2.8948 -4.0398 -3.1873 47 1 3.6945 -2.9591 -1.0824 48 1 3.5948 -4.7297 -0.9243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278723214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:06 Heat of formation + Delta-G solvation = -150.858790 kcal Electronic energy + Delta-G solvation = -31478.340159 eV Core-core repulsion = 27147.577167 eV Total energy + Delta-G solvation = -4330.762992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.62718 -39.60586 -38.95908 -37.72582 -35.77414 -34.06417 -33.51462 -32.44475 -31.99895 -30.68773 -30.18271 -29.20522 -26.89500 -24.67176 -24.06701 -23.06017 -22.41468 -21.84926 -20.78004 -19.93581 -18.70049 -18.06547 -17.57709 -17.24586 -16.64931 -16.48061 -15.91719 -15.67605 -15.44929 -15.06258 -14.80204 -14.71951 -14.44043 -14.26038 -14.22840 -13.78136 -13.71401 -13.58453 -13.04598 -12.73986 -12.37767 -12.27847 -12.08585 -11.95063 -11.86182 -11.59903 -11.45292 -11.19492 -10.93178 -10.92015 -10.83292 -10.39927 -10.35620 -10.06859 -9.98655 -9.90746 -9.83817 -9.74576 -9.20910 -9.13969 -8.85858 -8.44726 -7.13888 -5.90375 -3.20728 2.36711 2.74531 3.02835 3.37157 3.44423 3.46280 3.48348 3.95916 4.19253 4.33037 4.46742 4.49813 4.58808 4.77881 4.89279 4.94515 5.14759 5.22654 5.25112 5.31922 5.37953 5.42766 5.51928 5.52074 5.60433 5.61555 5.73145 5.75323 5.96208 6.05244 6.08159 6.18820 6.27807 6.36410 6.40115 6.52886 6.53887 6.57488 6.70529 6.75682 7.00584 7.03664 7.62879 7.66898 8.01105 8.03256 8.26948 8.69764 9.40224 9.89496 10.26393 11.31214 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.003360 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.242159 B = 8331.731941 C = 9711.918877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.005 4.005 3 Si 0.900 3.100 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.190 3.810 11 C 0.121 3.879 12 N -0.697 5.697 13 C 0.508 3.492 14 O -0.531 6.531 15 C 0.057 3.943 16 H 0.102 0.898 17 C -0.144 4.144 18 C -0.141 4.141 19 C 0.053 3.947 20 H 0.101 0.899 21 C 0.522 3.478 22 N -0.854 5.854 23 O -0.513 6.513 24 O -0.316 6.316 25 C -0.151 4.151 26 C 0.066 3.934 27 O -0.393 6.393 28 C 0.070 3.930 29 C -0.155 4.155 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.403 0.597 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.401 0.599 40 H 0.405 0.595 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.502 -12.152 11.027 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.732 3.268 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.098 3.902 11 C -0.005 4.005 12 N -0.349 5.349 13 C 0.292 3.708 14 O -0.407 6.407 15 C -0.005 4.005 16 H 0.119 0.881 17 C -0.182 4.182 18 C -0.179 4.179 19 C -0.009 4.009 20 H 0.118 0.882 21 C 0.305 3.695 22 N -0.421 5.421 23 O -0.386 6.386 24 O -0.233 6.233 25 C -0.189 4.189 26 C -0.011 4.011 27 O -0.312 6.312 28 C -0.006 4.006 29 C -0.196 4.196 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.239 0.761 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.229 0.771 40 H 0.236 0.764 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.510 -12.084 10.896 16.885 hybrid contribution -0.749 1.294 0.439 1.558 sum -5.260 -10.790 11.335 16.510 Atomic orbital electron populations 1.69636 1.04995 1.25765 1.57442 1.24668 0.95408 0.97498 1.02522 0.86291 0.78972 0.84051 0.77528 1.21735 1.21821 1.20688 1.19072 0.91038 0.83627 1.42929 0.91175 1.42485 1.06164 0.99488 1.87369 1.19830 0.91538 0.87287 0.91562 1.21772 0.92810 0.99719 0.86150 1.45620 1.13896 1.70736 1.04692 1.20172 0.88723 0.78024 0.83861 1.90716 1.17261 1.48064 1.84659 1.22734 0.91724 1.00449 0.85575 0.88063 1.22937 0.99480 0.98092 0.97665 1.23101 1.01268 0.98255 0.95229 1.23068 0.91771 0.96265 0.89776 0.88156 1.20199 0.88280 0.77602 0.83408 1.43721 1.11551 1.64886 1.21937 1.90824 1.14047 1.54439 1.79255 1.89213 1.35605 1.83350 1.15091 1.22352 0.99430 0.98750 0.98343 1.22485 0.90730 1.01565 0.86322 1.87821 1.45123 1.46256 1.52047 1.22444 0.91247 0.90355 0.96556 1.22493 0.99084 1.01487 0.96505 0.93502 0.78064 0.92815 0.91556 0.76135 0.88873 0.89362 0.88954 0.89735 0.77114 0.76408 0.91222 0.91253 0.90019 0.92317 0.91458 0.90317 0.90500 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.27 13.07 55.49 0.73 -24.54 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 3 Si 0.90 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -5.75 8.70 -15.06 -0.13 -5.88 16 8 H 0.07 1.75 6.76 -52.48 -0.35 1.39 16 9 N -0.71 -14.77 3.67 -47.06 -0.17 -14.95 16 10 C 0.19 3.26 0.41 -131.63 -0.05 3.21 16 11 C 0.12 2.19 4.32 -4.04 -0.02 2.17 16 12 N -0.70 -11.83 5.11 -60.29 -0.31 -12.14 16 13 C 0.51 9.28 6.95 -10.99 -0.08 9.20 16 14 O -0.53 -12.14 16.53 -14.02 -0.23 -12.37 16 15 C 0.06 0.81 3.84 -27.31 -0.10 0.71 16 16 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 17 C -0.14 -1.38 6.62 -25.20 -0.17 -1.54 16 18 C -0.14 -1.14 6.57 -24.72 -0.16 -1.30 16 19 C 0.05 0.57 3.76 -26.83 -0.10 0.47 16 20 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 21 C 0.52 6.22 7.48 -10.98 -0.08 6.13 16 22 N -0.85 -5.27 8.86 31.22 0.28 -5.00 16 23 O -0.51 -9.21 17.40 -13.47 -0.23 -9.44 16 24 O -0.32 -5.25 10.04 -64.29 -0.65 -5.90 16 25 C -0.15 -2.18 4.80 -26.59 -0.13 -2.30 16 26 C 0.07 0.98 6.68 37.21 0.25 1.23 16 27 O -0.39 -6.56 10.77 -35.23 -0.38 -6.94 16 28 C 0.07 1.18 6.68 37.21 0.25 1.43 16 29 C -0.16 -2.61 4.83 -26.59 -0.13 -2.74 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.38 8.49 6.71 -40.82 -0.27 8.22 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.39 7.53 -51.93 -0.39 0.99 16 34 H 0.40 6.40 7.41 -40.82 -0.30 6.10 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.87 7.69 -51.93 -0.40 0.47 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 39 H 0.40 1.00 8.83 -40.82 -0.36 0.64 16 40 H 0.40 2.13 8.93 -40.82 -0.36 1.77 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.92 7.36 -51.93 -0.38 0.54 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.96 7.08 -51.93 -0.37 0.60 16 45 H 0.07 1.29 7.75 -51.93 -0.40 0.88 16 46 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.08 1.39 7.15 -51.93 -0.37 1.02 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -35.97 386.27 -8.25 -44.22 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -7.33 Total: 14.18 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -0.75 Total: 10.57 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.52 Total: -56.63 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -1.49 Total: -34.65 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.97 -8.25 -44.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278723214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.638 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds