Wall clock time and date at job start Sat Apr 11 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99910 * 2 1 4 4 H 1.48502 * 109.46672 * 269.99631 * 3 2 1 5 5 H 1.48499 * 109.47022 * 29.99540 * 3 2 1 6 6 H 1.48499 * 109.47229 * 150.00018 * 3 2 1 7 7 C 1.38809 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99608 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00405 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00165 * 185.85580 * 9 7 2 11 11 C 1.53003 * 109.61666 * 58.94874 * 10 9 7 12 12 N 1.46501 * 109.47091 * 54.93716 * 11 10 9 13 13 C 1.34775 * 120.00108 * 177.09089 * 12 11 10 14 14 O 1.21289 * 119.99722 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00198 * 179.97438 * 13 12 11 16 16 H 1.08994 * 109.87405 * 304.29986 * 15 13 12 17 17 C 1.54103 * 109.87635 * 65.30994 * 15 13 12 18 18 C 1.54812 * 104.18902 * 121.45319 * 17 15 13 19 19 C 1.54993 * 102.09422 * 20.88010 * 18 17 15 20 20 H 1.09004 * 110.62141 * 81.47456 * 19 18 17 21 21 C 1.50695 * 110.61961 * 204.47893 * 19 18 17 22 22 N 1.34784 * 119.99605 * 294.99446 * 21 19 18 23 23 O 1.21277 * 120.00496 * 114.99983 * 21 19 18 24 24 O 1.43748 * 109.87807 * 183.29042 * 15 13 12 25 25 C 1.53177 * 109.54165 * 179.16991 * 10 9 7 26 26 C 1.53093 * 109.21714 * 62.85411 * 25 10 9 27 27 O 1.43039 * 109.34048 * 57.57507 * 26 25 10 28 28 C 1.42896 * 114.13729 * 298.88325 * 27 26 25 29 29 C 1.53094 * 109.41733 * 61.15797 * 28 27 26 30 30 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99662 * 5.85403 * 9 7 2 32 32 H 1.09001 * 109.46940 * 174.94122 * 11 10 9 33 33 H 1.09001 * 109.47080 * 294.93994 * 11 10 9 34 34 H 0.96998 * 120.00028 * 357.09483 * 12 11 10 35 35 H 1.09005 * 110.48452 * 240.13012 * 17 15 13 36 36 H 1.08998 * 110.48968 * 2.64430 * 17 15 13 37 37 H 1.09005 * 110.90757 * 139.07691 * 18 17 15 38 38 H 1.08996 * 110.90991 * 262.67912 * 18 17 15 39 39 H 0.96990 * 119.99871 * 0.02562 * 22 21 19 40 40 H 0.96998 * 119.99340 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.52258 * 182.79338 * 25 10 9 42 42 H 1.09004 * 109.52425 * 302.91495 * 25 10 9 43 43 H 1.08997 * 109.48112 * 177.61800 * 26 25 10 44 44 H 1.09000 * 109.48099 * 297.65967 * 26 25 10 45 45 H 1.09001 * 109.48084 * 301.18319 * 28 27 26 46 46 H 1.08998 * 109.48556 * 181.14445 * 28 27 26 47 47 H 1.08994 * 109.52650 * 182.48864 * 29 28 27 48 48 H 1.09004 * 109.57240 * 62.32842 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0523 -3.6534 0.1305 11 6 2.8397 -3.6611 1.4424 12 7 1.9303 -3.3932 2.5593 13 6 2.3939 -3.4096 3.8247 14 8 3.5642 -3.6458 4.0387 15 6 1.4586 -3.1334 4.9735 16 1 0.9696 -2.1700 4.8298 17 6 0.4002 -4.2495 5.0675 18 6 0.5842 -4.8280 6.4916 19 6 1.3099 -3.6692 7.2216 20 1 0.5952 -2.9135 7.5476 21 6 2.1018 -4.1926 8.3920 22 7 1.4654 -4.7538 9.4392 23 8 3.3117 -4.1088 8.3917 24 8 2.1913 -3.1299 6.2103 25 6 1.0580 -4.8185 0.1229 26 6 0.3297 -4.8506 -1.2234 27 8 1.2887 -4.9687 -2.2781 28 6 2.2155 -3.8834 -2.3494 29 6 3.0181 -3.8130 -1.0477 30 1 -0.4850 0.8401 -0.0004 31 1 0.3594 -2.3903 -0.0855 32 1 3.3068 -4.6363 1.5801 33 1 3.6101 -2.8908 1.4083 34 1 0.9945 -3.2039 2.3881 35 1 -0.6015 -3.8362 4.9500 36 1 0.5863 -5.0160 4.3152 37 1 -0.3805 -5.0358 6.9547 38 1 1.2049 -5.7237 6.4705 39 1 0.4978 -4.8211 9.4393 40 1 1.9752 -5.0904 10.1927 41 1 1.5943 -5.7561 0.2693 42 1 0.3332 -4.6842 0.9259 43 1 -0.3485 -5.7034 -1.2495 44 1 -0.2389 -3.9295 -1.3511 45 1 1.6714 -2.9496 -2.4918 46 1 2.8948 -4.0398 -3.1873 47 1 3.6945 -2.9591 -1.0824 48 1 3.5948 -4.7297 -0.9243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278723214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:05 Heat of formation + Delta-G solvation = -181.139924 kcal Electronic energy + Delta-G solvation = -31479.653247 eV Core-core repulsion = 27147.577167 eV Total energy + Delta-G solvation = -4332.076081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68965 -40.89993 -40.18096 -38.90793 -37.25930 -35.16863 -34.88249 -33.98748 -33.01447 -31.97254 -31.19789 -30.90761 -28.21297 -26.00522 -25.59925 -24.39366 -23.47635 -22.97521 -21.60744 -21.29415 -20.14835 -19.19624 -18.93194 -18.41387 -17.61988 -17.58779 -17.22990 -17.05901 -16.74205 -16.36308 -16.19454 -15.89850 -15.64988 -15.60165 -15.55841 -15.22267 -15.05588 -14.55596 -14.43348 -14.18155 -13.70769 -13.63977 -13.26249 -13.15683 -12.94875 -12.86010 -12.79405 -12.69303 -12.59723 -12.23985 -12.09651 -11.95840 -11.71664 -11.50714 -11.42887 -11.12852 -10.96990 -10.89164 -10.73742 -10.53020 -10.31320 -9.95724 -8.97682 -7.91665 -5.17149 1.43377 1.47869 1.48794 1.52401 1.58550 1.87465 2.39372 2.55970 3.05183 3.08639 3.39716 3.42919 3.72979 3.74840 3.77666 3.87612 3.89070 4.00127 4.04524 4.14773 4.15808 4.24828 4.41136 4.48936 4.58396 4.61861 4.76228 4.77466 4.81340 4.84228 4.90032 4.93196 5.02973 5.04598 5.09867 5.22722 5.28075 5.35350 5.51590 5.60127 5.64943 5.87171 6.31014 6.37797 6.42736 6.64194 7.29076 7.30618 7.41313 8.08144 8.36948 9.29931 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.003360 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.242159 B = 8331.731941 C = 9711.918877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.053 4.053 3 Si 0.942 3.058 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.288 1.288 7 C -0.216 4.216 8 H 0.060 0.940 9 N -0.710 5.710 10 C 0.190 3.810 11 C 0.127 3.873 12 N -0.687 5.687 13 C 0.500 3.500 14 O -0.587 6.587 15 C 0.056 3.944 16 H 0.111 0.889 17 C -0.136 4.136 18 C -0.129 4.129 19 C 0.043 3.957 20 H 0.138 0.862 21 C 0.517 3.483 22 N -0.822 5.822 23 O -0.589 6.589 24 O -0.367 6.367 25 C -0.142 4.142 26 C 0.064 3.936 27 O -0.398 6.398 28 C 0.077 3.923 29 C -0.154 4.154 30 H 0.249 0.751 31 H 0.380 0.620 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.411 0.589 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.146 0.854 38 H 0.068 0.932 39 H 0.423 0.577 40 H 0.412 0.588 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.040 0.960 45 H 0.038 0.962 46 H 0.098 0.902 47 H 0.057 0.943 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.158 -14.141 11.871 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.246 4.246 3 Si 0.775 3.225 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.214 1.214 7 C -0.348 4.348 8 H 0.078 0.922 9 N -0.351 5.351 10 C 0.099 3.901 11 C 0.001 3.999 12 N -0.339 5.339 13 C 0.287 3.713 14 O -0.467 6.467 15 C -0.005 4.005 16 H 0.129 0.871 17 C -0.174 4.174 18 C -0.166 4.166 19 C -0.017 4.017 20 H 0.155 0.845 21 C 0.302 3.698 22 N -0.389 5.389 23 O -0.468 6.468 24 O -0.285 6.285 25 C -0.180 4.180 26 C -0.012 4.012 27 O -0.317 6.317 28 C 0.000 4.000 29 C -0.194 4.194 30 H 0.058 0.942 31 H 0.214 0.786 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.248 0.752 35 H 0.148 0.852 36 H 0.104 0.896 37 H 0.164 0.836 38 H 0.087 0.913 39 H 0.256 0.744 40 H 0.244 0.756 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.133 0.867 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.116 0.884 47 H 0.076 0.924 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.246 -14.118 11.762 19.752 hybrid contribution 0.107 1.833 0.215 1.849 sum -7.138 -12.284 11.977 18.583 Atomic orbital electron populations 1.69711 1.05511 1.25494 1.59613 1.25077 0.95977 0.99293 1.04268 0.85618 0.77720 0.82153 0.77056 1.21889 1.22386 1.21383 1.19151 0.90700 0.84898 1.40031 0.92172 1.42462 1.05895 0.99785 1.86999 1.19990 0.92154 0.86934 0.91038 1.21646 0.92435 0.98888 0.86980 1.45563 1.13965 1.70025 1.04324 1.21076 0.88692 0.76563 0.85002 1.90681 1.19857 1.50694 1.85502 1.22839 0.91420 1.02789 0.83475 0.87138 1.23020 0.99402 0.96422 0.98532 1.23161 1.03118 0.96196 0.94139 1.23506 0.91476 0.98241 0.88514 0.84465 1.20601 0.87488 0.77160 0.84581 1.43462 1.12796 1.62267 1.20336 1.90794 1.17189 1.57907 1.80919 1.89171 1.38421 1.84176 1.16780 1.22313 0.99045 0.97749 0.98909 1.22636 0.90614 1.02165 0.85831 1.87824 1.45280 1.45761 1.52847 1.22347 0.91238 0.89334 0.97056 1.22469 0.98854 1.01642 0.96483 0.94193 0.78550 0.91923 0.95203 0.75199 0.85153 0.89622 0.83599 0.91296 0.74428 0.75601 0.89516 0.89543 0.86747 0.94158 0.94377 0.88366 0.92393 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -51.98 13.07 21.65 0.28 -51.70 16 2 C -0.05 -2.77 5.50 84.86 0.47 -2.30 16 3 Si 0.94 44.96 29.55 68.60 2.03 46.98 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 7 C -0.22 -10.64 8.70 84.03 0.73 -9.91 16 8 H 0.06 3.08 6.76 -2.91 -0.02 3.06 16 9 N -0.71 -29.30 3.67 -302.81 -1.11 -30.41 16 10 C 0.19 6.35 0.41 3.72 0.00 6.35 16 11 C 0.13 4.59 4.32 86.38 0.37 4.96 16 12 N -0.69 -23.09 5.11 -463.05 -2.37 -25.45 16 13 C 0.50 18.50 6.95 87.66 0.61 19.11 16 14 O -0.59 -28.04 16.53 15.65 0.26 -27.79 16 15 C 0.06 1.55 3.84 30.22 0.12 1.66 16 16 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 17 C -0.14 -2.14 6.62 31.59 0.21 -1.93 16 18 C -0.13 -1.60 6.57 31.89 0.21 -1.39 16 19 C 0.04 0.84 3.76 30.53 0.11 0.96 16 20 H 0.14 1.61 8.14 -2.38 -0.02 1.59 16 21 C 0.52 11.86 7.48 87.65 0.66 12.52 16 22 N -0.82 -8.10 8.86 -173.53 -1.54 -9.63 16 23 O -0.59 -22.01 17.40 15.17 0.26 -21.74 16 24 O -0.37 -12.28 10.04 -121.20 -1.22 -13.50 16 25 C -0.14 -3.73 4.80 30.68 0.15 -3.58 16 26 C 0.06 1.73 6.68 72.01 0.48 2.21 16 27 O -0.40 -12.38 10.77 -148.98 -1.60 -13.99 16 28 C 0.08 2.49 6.68 72.01 0.48 2.97 16 29 C -0.15 -5.08 4.83 30.69 0.15 -4.94 16 30 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 31 H 0.38 16.60 6.71 -92.71 -0.62 15.97 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.03 1.29 7.53 -2.39 -0.02 1.27 16 34 H 0.41 12.50 7.41 -92.71 -0.69 11.82 16 35 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.09 1.42 7.69 -2.39 -0.02 1.40 16 37 H 0.15 0.26 8.14 -2.38 -0.02 0.24 16 38 H 0.07 1.10 8.05 -2.39 -0.02 1.08 16 39 H 0.42 0.37 8.83 -92.72 -0.82 -0.45 16 40 H 0.41 3.53 8.93 -92.71 -0.83 2.70 16 41 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.09 2.00 7.36 -2.38 -0.02 1.98 16 43 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.04 1.26 7.08 -2.39 -0.02 1.24 16 45 H 0.04 1.45 7.75 -2.39 -0.02 1.44 16 46 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 47 H 0.06 2.12 7.15 -2.39 -0.02 2.10 16 48 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -84.64 386.27 -2.19 -86.83 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: -1.93 Total: 33.69 kcal Atomic # 6 Polarization: 21.96 SS G_CDS: 4.74 Total: 26.70 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -4.73 Total: -117.20 kcal Atomic # 8 Polarization: -74.71 SS G_CDS: -2.30 Total: -77.01 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -84.64 -2.19 -86.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278723214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.314 kcal (2) G-P(sol) polarization free energy of solvation -84.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds